Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0016721

Physical Location & Seq

Genomic Coordinates Reverse (-)

1094550 .. 1096900

Gene Structure 2351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGTATCTTTGTGCTCCTCTGACAATAACAGCTTCTGGGTCGGCTCTGTTTTTGAGGCTATGGTGGTCAACACTGTTCTTGCTGCTCACAACTCTCTTGCTCTGTGGCTCTTGGCGGCAGGATCCCTGATGAATGACATCAATGTGTCTCCAAAATTGTCTGCAGTCACCGGAAGCTTTCCTTTTGAAGAACTTTTCAAATTGCAAAAACCTGGTCCAGAAAACAAAGATGCCAGCGACACTGAGGATGACGAGGAAGATGATGTCGATGATGTGCCTGAGGAGGAAGATGATGCATCAGATGAGGACTTCTCAGGCGAAGAAGGGGAAGATGCAGACCCTGAGGATGAACCTGAAGCCAATGGTGATGGAGGAAATGATGACGATGATGAGGAGGACGAGGATGATGATGATGGTGGCGATGATGATGATGAGGATGCAGAGGAGGAAGAAGAGGAAGACGAGGAGGAGGTTCCCCAGCCTCCTGCTAAAAAGAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.21

Weight (kDa)

4.05

Isoelectric Point (pI)

66.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02080
malus_domestica	MD02G1018600.v1.1 MD15G1162600.v1.1
prunus_persica	Prupe.7G252200_v2.0.a1 Prupe.7G252200_v2.0.a1
pyrus_communis	pycom02g01670
rosa_chinensis	RchiOBHm_Chr2g0087101
rosa_laevigata	RLG00000015832
rosa_multiflora	Rmu_ssc0000239.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153880 Rroxscaffold_7G00210780
rosa_rugosa	Rorug01G0472500 Rorug01G0472500
rosa_wichuraiana	Rw2G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	116
AclWI	GGATC	2 cut(s)	117, 130
AcuI	CTGAAG	1 cut(s)	375
AgsI	TTSAA	2 cut(s)	188, 199
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	2 cut(s)	33, 177
AluI	AGCT	2 cut(s)	33, 177
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	2 cut(s)	117, 130
AlwNI	CAGNNNCTG	2 cut(s)	36, 341
ApeKI	GCWGC	1 cut(s)	83
ArsI	GACNNNNNNTTYG	2 cut(s)	199, 231
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	160, 377
AvaII	GGWCC	1 cut(s)	215
AxyI	CCTNAGG	2 cut(s)	279, 342
BamHI	GGATCC	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	2 cut(s)	362, 407
BciT130I	CCWGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	2 cut(s)	84, 117
BlsI	GCNGC	2 cut(s)	85, 118
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	2 cut(s)	124, 474
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	5 cut(s)	220, 283, 305, 322, 427
BpiI	GAAGAC	1 cut(s)	465
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
BsaWI	WCCGGW	1 cut(s)	170
Bse21I	CCTNAGG	2 cut(s)	279, 342
BseBI	CCWGG	1 cut(s)	213
BseGI	GGATG	4 cut(s)	253, 352, 409, 442
BseMII	CTCAG	4 cut(s)	234, 270, 327, 333
BseRI	GAGGAG	6 cut(s)	7, 296, 407, 458, 479, 482
BseXI	GCAGC	1 cut(s)	70
BseYI	CCCAGC	1 cut(s)	477
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	171
BsmAI	GTCTC	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	122
BspACI	CCGC	1 cut(s)	116
BspCNI	CTCAG	4 cut(s)	235, 271, 326, 334
BspLI	GGNNCC	2 cut(s)	124, 474
BspMAI	CTGCAG	1 cut(s)	166
BspPI	GGATC	2 cut(s)	117, 130
BssMI	GATC	1 cut(s)	122
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	447
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	4 cut(s)	243, 279, 313, 342
BstF5I	GGATG	4 cut(s)	253, 352, 409, 442
BstKTI	GATC	1 cut(s)	125
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	122
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	70
BstV2I	GAAGAC	1 cut(s)	465
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
Bsu36I	CCTNAGG	2 cut(s)	279, 342
BtgZI	GCGATG	1 cut(s)	435
BtsCI	GGATG	4 cut(s)	253, 352, 409, 442
BtsIMutI	CAGTG	2 cut(s)	72, 240
Cac8I	GCNNGC	1 cut(s)	235
CaiI	CAGNNNCTG	2 cut(s)	36, 341
Cfr13I	GGNCC	1 cut(s)	215
CsiI	ACCWGGT	1 cut(s)	211
CviJI	RGCY	7 cut(s)	33, 45, 59, 109, 177, 359, 481
CviKI_1	RGCY	7 cut(s)	33, 45, 59, 109, 177, 359, 481
DdeI	CTNAG	4 cut(s)	243, 279, 313, 342
DpnI	GATC	1 cut(s)	124
DpnII	GATC	1 cut(s)	122
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Eco47I	GGWCC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	375
Eco81I	CCTNAGG	2 cut(s)	279, 342
EcoRII	CCWGG	1 cut(s)	211
EcoT22I	ATGCAT	1 cut(s)	298
FaiI	YATR	1 cut(s)	62
FalI	AAGNNNNNCTT	2 cut(s)	166, 198
Fnu4HI	GCNGC	2 cut(s)	84, 117
FokI	GGATG	4 cut(s)	260, 359, 416, 449
Fsp4HI	GCNGC	2 cut(s)	84, 117
GluI	GCNGC	2 cut(s)	84, 117
GsaI	CCCAGC	1 cut(s)	481
HapII	CCGG	1 cut(s)	171
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HindIII	AAGCTT	1 cut(s)	175
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	2 cut(s)	160, 377
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	2 cut(s)	22, 301
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	5 cut(s)	164, 205, 296, 335, 440
HpyF3I	CTNAG	4 cut(s)	243, 279, 313, 342
Kzo9I	GATC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	20
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	5 cut(s)	220, 283, 305, 322, 427
MabI	ACCWGGT	1 cut(s)	211
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	1 cut(s)	124
MboI	GATC	1 cut(s)	122
MboII	GAAGA	8 cut(s)	200, 269, 299, 332, 341, 461, 464, 470
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	2 cut(s)	155, 200
Mph1103I	ATGCAT	1 cut(s)	298
MslI	CAYNNNNRTG	1 cut(s)	143
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
NdeII	GATC	1 cut(s)	122
NlaIV	GGNNCC	2 cut(s)	124, 474
NmuCI	GTSAC	1 cut(s)	166
NsiI	ATGCAT	1 cut(s)	298
PkrI	GCNGC	2 cut(s)	85, 118
Psp6I	CCWGG	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	2 cut(s)	124, 474
PspPI	GGNCC	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	166
PstNI	CAGNNNCTG	2 cut(s)	36, 341
PsuI	RGATCY	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	143
SatI	GCNGC	2 cut(s)	84, 117
Sau3AI	GATC	1 cut(s)	122
Sau96I	GGNCC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	5 cut(s)	35, 179, 214, 355, 474
SexAI	ACCWGGT	1 cut(s)	211
SfaNI	GCATC	5 cut(s)	220, 283, 305, 322, 427
SfcI	CTRYAG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	155, 200
SsiI	CCGC	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	1 cut(s)	267
TasI	AATT	2 cut(s)	155, 200
TauI	GCSGC	1 cut(s)	119
TscAI	CASTG	2 cut(s)	79, 247
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	2 cut(s)	146, 363
TspRI	CASTG	2 cut(s)	79, 247
VpaK11BI	GGWCC	1 cut(s)	215
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.