Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0016721

Physical Location & Seq

Genomic Coordinates Reverse (-)

21286307 .. 21288892

Gene Structure 2586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G252200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGGCTTGTACGCCTCTGAGAAAAAGAGCATGTGGGAAGGAACTCTTTTGGAAGCAATGCTGGTCAACACTGTTCTTGTTGCTCACAACTCTCTTGCTCTGCTGCTTTTGGCGACTGGATCGGTGATAAATGATATCAATATGGCATCAAAATTGACTGCTGTCACTGGAAGGTTTCCTTTTGACGAACTTCTCAAATTGAAAAAACCTTGTGTGGAAAACAAAGATGCTAGCGATACAGAGGATGATGAAGACGACAACGAAGATGATGATGATGTGAATGACCAGGATGATGAGGAGGGAGGAGATGAGGACTTCTCAGGTGAAGAAGGGGAAGATGAAGGAGGGGATCCTGAGGATGATCCTGAAGCCAATGGCAATGAAGGAAGTGATGATGAGGATGAGGATGATGACGACGAAGATGACAATGGTGATGATGATGAAGATGAGGATGGAGAGGAAGAAGATGAGGATGAAGAGGAAGAGGTTCCACAGCCACCTGCCAAAAGGCGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

18.95

Weight (kDa)

4.05

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02080
malus_domestica	MD02G1018600.v1.1 MD15G1162600.v1.1
prunus_persica	Prupe.7G252200_v2.0.a1 Prupe.7G252200_v2.0.a1
pyrus_communis	pycom02g01670
rosa_chinensis	RchiOBHm_Chr2g0087101
rosa_laevigata	RLG00000015832
rosa_multiflora	Rmu_ssc0000239.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153880 Rroxscaffold_7G00210780
rosa_rugosa	Rorug01G0472500 Rorug01G0472500
rosa_wichuraiana	Rw2G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	508
Acc36I	ACCTGC	1 cut(s)	508
AciI	CCGC	1 cut(s)	511
AclWI	GGATC	4 cut(s)	127, 344, 356, 357
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	510
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	285
AlwI	GGATC	4 cut(s)	127, 344, 356, 357
ApeKI	GCWGC	1 cut(s)	103
Asp700I	GAANNNNTTC	1 cut(s)	486
AsuHPI	GGTGA	3 cut(s)	136, 335, 443
AsuNHI	GCTAGC	1 cut(s)	230
AxyI	CCTNAGG	1 cut(s)	354
BamHI	GGATCC	1 cut(s)	349
BbsI	GAAGAC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	1 cut(s)	446
BciT130I	CCWGG	1 cut(s)	287
BfaI	CTAG	1 cut(s)	231
BfuAI	ACCTGC	1 cut(s)	508
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
Bme1390I	CCNGG	1 cut(s)	287
BmiI	GGNNCC	2 cut(s)	351, 489
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	2 cut(s)	155, 217
BmtI	GCTAGC	1 cut(s)	234
BoxI	GACNNNNGTC	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	258
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	510
Bse1I	ACTGG	2 cut(s)	121, 172
Bse21I	CCTNAGG	1 cut(s)	354
Bse3DI	GCAATG	2 cut(s)	63, 385
BseBI	CCWGG	1 cut(s)	287
BseGI	GGATG	7 cut(s)	250, 295, 364, 406, 412, 457, 478
BseLI	CCNNNNNNNGG	1 cut(s)	510
BseMI	GCAATG	2 cut(s)	63, 385
BseMII	CTCAG	3 cut(s)	9, 333, 345
BseNI	ACTGG	2 cut(s)	121, 172
BseRI	GAGGAG	2 cut(s)	311, 318
BseXI	GCAGC	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	510
Bsp143I	GATC	3 cut(s)	119, 349, 361
BspACI	CCGC	1 cut(s)	511
BspCNI	CTCAG	3 cut(s)	10, 332, 346
BspLI	GGNNCC	2 cut(s)	351, 489
BspMI	ACCTGC	1 cut(s)	508
BspOI	GCTAGC	1 cut(s)	234
BspPI	GGATC	4 cut(s)	127, 344, 356, 357
BsrDI	GCAATG	2 cut(s)	63, 385
BsrI	ACTGG	2 cut(s)	121, 172
BssMI	GATC	3 cut(s)	119, 349, 361
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	2 cut(s)	471, 477
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	3 cut(s)	18, 319, 354
BstF5I	GGATG	7 cut(s)	250, 295, 364, 406, 412, 457, 478
BstKTI	GATC	3 cut(s)	122, 352, 364
BstMBI	GATC	3 cut(s)	119, 349, 361
BstNI	CCWGG	1 cut(s)	287
BstNSI	RCATGY	1 cut(s)	34
BstPAI	GACNNNNGTC	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	90
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
Bsu36I	CCTNAGG	1 cut(s)	354
BtsCI	GGATG	7 cut(s)	250, 295, 364, 406, 412, 457, 478
BtsIMutI	CAGTG	2 cut(s)	69, 165
BveI	ACCTGC	1 cut(s)	508
Cac8I	GCNNGC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	3 cut(s)	6, 371, 496
CviKI_1	RGCY	3 cut(s)	6, 371, 496
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	3 cut(s)	18, 319, 354
DpnI	GATC	3 cut(s)	121, 351, 363
DpnII	GATC	3 cut(s)	119, 349, 361
Eam1104I	CTCTTC	2 cut(s)	471, 477
EarI	CTCTTC	2 cut(s)	471, 477
Eco32I	GATATC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	387
Eco81I	CCTNAGG	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	285
EcoRV	GATATC	1 cut(s)	136
FaeI	CATG	1 cut(s)	34
FaiI	YATR	2 cut(s)	32, 143
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 163, 195
FatI	CATG	1 cut(s)	30
Fnu4HI	GCNGC	1 cut(s)	104
FokI	GGATG	7 cut(s)	257, 302, 371, 413, 419, 464, 485
Fsp4HI	GCNGC	1 cut(s)	104
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	1 cut(s)	104
Hin1II	CATG	1 cut(s)	34
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HphI	GGTGA	3 cut(s)	136, 335, 443
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	2 cut(s)	353, 365
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	1 cut(s)	419
HpyAV	CCTTC	5 cut(s)	32, 165, 323, 335, 377
HpyCH4III	ACNGT	1 cut(s)	73
HpyF3I	CTNAG	3 cut(s)	18, 319, 354
Hsp92II	CATG	1 cut(s)	34
Kzo9I	GATC	3 cut(s)	119, 349, 361
LpnPI	CCDG	9 cut(s)	47, 102, 153, 272, 299, 306, 366, 378, 513
Lsp1109I	GCAGC	1 cut(s)	90
LweI	GCATC	2 cut(s)	155, 217
MaeI	CTAG	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	3 cut(s)	121, 351, 363
MboI	GATC	3 cut(s)	119, 349, 361
MflI	RGATCY	1 cut(s)	349
MluCI	AATT	2 cut(s)	152, 197
MroXI	GAANNNNTTC	1 cut(s)	486
MspR9I	CCNGG	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	287
NdeII	GATC	3 cut(s)	119, 349, 361
NheI	GCTAGC	1 cut(s)	230
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	2 cut(s)	351, 489
NmuCI	GTSAC	1 cut(s)	163
NspI	RCATGY	1 cut(s)	34
PaqCI	CACCTGC	1 cut(s)	508
PdmI	GAANNNNTTC	1 cut(s)	486
PkrI	GCNGC	1 cut(s)	105
PshAI	GACNNNNGTC	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	2 cut(s)	351, 489
PsuI	RGATCY	1 cut(s)	349
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	3 cut(s)	119, 349, 361
ScrFI	CCNGG	1 cut(s)	287
SetI	ASST	5 cut(s)	176, 211, 325, 489, 502
SfaNI	GCATC	2 cut(s)	155, 217
Sse9I	AATT	2 cut(s)	152, 197
SsiI	CCGC	1 cut(s)	511
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	73
TasI	AATT	2 cut(s)	152, 197
TscAI	CASTG	2 cut(s)	76, 172
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	5 cut(s)	264, 354, 396, 456, 489
TspRI	CASTG	2 cut(s)	76, 172
XceI	RCATGY	1 cut(s)	34
XmnI	GAANNNNTTC	1 cut(s)	486
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.