MD02G1018600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0016721
Physical Location & Seq
Forward (+)
1367376 .. 1369951
2576 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1018600.v1.1.491

Sequence Viewer

Length: 519 bp
ATGGAGTTGTGCGCCTCTGAGAAAAAGGGCATCTGGGTTGGCTCTCTTTTGGAAGCAATGGTGGGCGACACTGTCGTTGCTGCTCGCAACTCCATTGCTCTGCTGCTCCTTGCGACTGGGGCACTGATGAATGGTATCAATATGTCACCGGAATTGACTGCAATCACAGGAAGGTTTCCTTTTGAAGAACTTCTCAAAGTGGAAAAACCGGGTGCGGAAAACAAAGATGCTAGTGATACAGAGGATGACAACGAGGATGAAGATGATGAGGAGGTGGATGACCCGGAGGATGATGATGCAGGAGATGAGGACTTCTCAGGTGACGAAGGGGCAGATAAAGAAGGGGATCCAGAGGATGATCCTGAAGCCAATGGCAACGGAGGCAGCGATGAGGATGATGATGAAGAAGACAATGATGATGACGATGGTGATGATGACGATGATGAAGATGAGGATGGAGAAGAAGAGGAAGAAGAGGACGACGAGATTCCACAGCCACCTGCTAAGAAGAGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

18.61

Weight (kDa)

4.05

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016721)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02080
malus_domestica MD02G1018600.v1.1 MD15G1162600.v1.1
prunus_persica Prupe.7G252200_v2.0.a1 Prupe.7G252200_v2.0.a1
pyrus_communis pycom02g01670
rosa_chinensis RchiOBHm_Chr2g0087101
rosa_laevigata RLG00000015832
rosa_multiflora Rmu_ssc0000239.1_g000001
rosa_roxburghii Rroxscaffold_2G00153880 Rroxscaffold_7G00210780
rosa_rugosa Rorug01G0472500 Rorug01G0472500
rosa_wichuraiana Rw2G002050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 508
Acc36I ACCTGC 1 cut(s) 508
AciI CCGC 1 cut(s) 215
AclWI GGATC 3 cut(s) 341, 353, 354
AcuI CTGAAG 1 cut(s) 384
AgsI TTSAA 1 cut(s) 185
AlwI GGATC 3 cut(s) 341, 353, 354
ApeKI GCWGC 3 cut(s) 80, 103, 384
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 14
AsuC2I CCSGG 2 cut(s) 210, 284
AsuHPI GGTGA 3 cut(s) 138, 332, 440
BaeGI GKGCMC 1 cut(s) 124
BamHI GGATCC 1 cut(s) 346
BbsI GAAGAC 1 cut(s) 414
BbvI GCAGC 3 cut(s) 67, 90, 396
BccI CCATC 2 cut(s) 419, 449
BcnI CCSGG 2 cut(s) 210, 284
BfaI CTAG 1 cut(s) 231
BfuAI ACCTGC 1 cut(s) 508
BisI GCNGC 3 cut(s) 81, 104, 385
BlsI GCNGC 3 cut(s) 82, 105, 386
Bme1390I CCNGG 2 cut(s) 210, 284
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 2 cut(s) 210, 284
BmrI ACTGGG 1 cut(s) 126
BmsI GCATC 3 cut(s) 39, 217, 286
BmuI ACTGGG 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 414
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BpuMI CCSGG 2 cut(s) 210, 284
BsaWI WCCGGW 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 121
Bse3DI GCAATG 2 cut(s) 63, 93
BseGI GGATG 7 cut(s) 250, 262, 283, 295, 361, 400, 460
BseMI GCAATG 2 cut(s) 63, 93
BseMII CTCAG 2 cut(s) 9, 330
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 284
BseSI GKGCMC 1 cut(s) 124
BseXI GCAGC 3 cut(s) 67, 90, 396
BsiSI CCGG 3 cut(s) 149, 209, 284
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 2 cut(s) 346, 358
BspACI CCGC 1 cut(s) 215
BspCNI CTCAG 2 cut(s) 10, 329
BspLI GGNNCC 1 cut(s) 348
BspMI ACCTGC 1 cut(s) 508
BspPI GGATC 3 cut(s) 341, 353, 354
BsrDI GCAATG 2 cut(s) 63, 93
BsrI ACTGG 1 cut(s) 121
BssMI GATC 2 cut(s) 346, 358
Bst4CI ACNGT 1 cut(s) 73
Bst6I CTCTTC 3 cut(s) 459, 468, 503
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 3 cut(s) 18, 316, 504
BstF5I GGATG 7 cut(s) 250, 262, 283, 295, 361, 400, 460
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 2 cut(s) 349, 361
BstMBI GATC 2 cut(s) 346, 358
BstMWI GCNNNNNNNGC 2 cut(s) 119, 381
BstSCI CCNGG 2 cut(s) 208, 282
BstSLI GKGCMC 1 cut(s) 124
BstV1I GCAGC 3 cut(s) 67, 90, 396
BstV2I GAAGAC 1 cut(s) 414
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BtgZI GCGATG 1 cut(s) 402
BtsCI GGATG 7 cut(s) 250, 262, 283, 295, 361, 400, 460
BtsIMutI CAGTG 2 cut(s) 69, 122
BveI ACCTGC 1 cut(s) 508
Cac8I GCNNGC 1 cut(s) 85
CfoI GCGC 1 cut(s) 14
CviJI RGCY 3 cut(s) 42, 368, 496
CviKI_1 RGCY 3 cut(s) 42, 368, 496
DdeI CTNAG 3 cut(s) 18, 316, 504
DpnI GATC 2 cut(s) 348, 360
DpnII GATC 2 cut(s) 346, 358
Eam1104I CTCTTC 3 cut(s) 459, 468, 503
EarI CTCTTC 3 cut(s) 459, 468, 503
Eco57I CTGAAG 1 cut(s) 384
FaiI YATR 1 cut(s) 143
FalI AAGNNNNNCTT 2 cut(s) 163, 195
Fnu4HI GCNGC 3 cut(s) 81, 104, 385
FokI GGATG 7 cut(s) 257, 269, 290, 302, 368, 407, 467
Fsp4HI GCNGC 3 cut(s) 81, 104, 385
FspBI CTAG 1 cut(s) 231
GlaI GCGC 1 cut(s) 13
GluI GCNGC 3 cut(s) 81, 104, 385
HapII CCGG 3 cut(s) 149, 209, 284
HhaI GCGC 1 cut(s) 14
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HinfI GANTC 1 cut(s) 487
HpaII CCGG 3 cut(s) 149, 209, 284
HphI GGTGA 3 cut(s) 138, 332, 440
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 2 cut(s) 350, 362
Hpy99I CGWCG 1 cut(s) 485
HpyAV CCTTC 3 cut(s) 165, 320, 335
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4V TGCA 2 cut(s) 161, 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 381
HpyF3I CTNAG 3 cut(s) 18, 316, 504
HspAI GCGC 1 cut(s) 12
Kzo9I GATC 2 cut(s) 346, 358
LmnI GCTCC 1 cut(s) 111
Lsp1109I GCAGC 3 cut(s) 67, 90, 396
LweI GCATC 3 cut(s) 39, 217, 286
MaeI CTAG 1 cut(s) 231
MaeIII GTNAC 2 cut(s) 144, 320
MalI GATC 2 cut(s) 348, 360
MboI GATC 2 cut(s) 346, 358
MboII GAAGA 9 cut(s) 197, 272, 416, 419, 458, 473, 476, 482, 485
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 1 cut(s) 152
MroXI GAANNNNTTC 1 cut(s) 189
MspI CCGG 3 cut(s) 149, 209, 284
MspR9I CCNGG 2 cut(s) 210, 284
MwoI GCNNNNNNNGC 2 cut(s) 119, 381
NciI CCSGG 2 cut(s) 210, 284
NdeII GATC 2 cut(s) 346, 358
NlaIV GGNNCC 1 cut(s) 348
NmuCI GTSAC 2 cut(s) 144, 320
PaqCI CACCTGC 1 cut(s) 508
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 487
PflFI GACNNNGTC 1 cut(s) 71
PkrI GCNGC 3 cut(s) 82, 105, 386
PspN4I GGNNCC 1 cut(s) 348
PsuI RGATCY 1 cut(s) 346
PsyI GACNNNGTC 1 cut(s) 71
SatI GCNGC 3 cut(s) 81, 104, 385
Sau3AI GATC 2 cut(s) 346, 358
ScrFI CCNGG 2 cut(s) 210, 284
SduI GDGCHC 1 cut(s) 124
SetI ASST 4 cut(s) 176, 276, 322, 502
SfaNI GCATC 3 cut(s) 39, 217, 286
Sse9I AATT 1 cut(s) 152
SsiI CCGC 1 cut(s) 215
SspMI CTAG 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 208, 282
TaaI ACNGT 1 cut(s) 73
TasI AATT 1 cut(s) 152
TfiI GAWTC 1 cut(s) 487
TscAI CASTG 2 cut(s) 76, 129
TseFI GTSAC 2 cut(s) 144, 320
TseI GCWGC 3 cut(s) 80, 103, 384
Tsp45I GTSAC 2 cut(s) 144, 320
TspDTI ATGAA 4 cut(s) 143, 273, 417, 459
TspGWI ACGGA 1 cut(s) 393
TspRI CASTG 2 cut(s) 76, 129
Tth111I GACNNNGTC 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.