Rmu_ssc0000239.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000239.1
OG0016721
Physical Location & Seq
Reverse (-)
1256 .. 2865
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000239.1_g000001.1.cds

Sequence Viewer

Length: 507 bp
atggaggctctgtgctcctctgagagaaacagcttctgggtcggctctgttttggaagctatggtggtcaacactgttcttgctgctcacaactctcttgctctgttgctcttggcgactggatcgctgatgaatgatatcaatgtgtcgccaaaattagctgcagtcgccggaagctttccttttgaagaactattcaaattggaaaaacctggtccggaaaacaaagatgccagtgacacagaagatgacgaggaagatgatgatgatgatgtgcctgaggaggaagatgatgcaggagatgaggacttctcaggcgaagaaggggaagatgcagatcctgaggatgaacctgaagccaatggtgatgcaggaagtgatgatgatgatgacgaggacgaggatgatgatgatgctgacgatgatgaagatgaggatgcagaggatgaagaagaggaagaagaggaggaggaggttccacagcctcctgctaaaaagaggaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.33

Weight (kDa)

4.05

Isoelectric Point (pI)

64.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016721)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02080
malus_domestica MD02G1018600.v1.1 MD15G1162600.v1.1
prunus_persica Prupe.7G252200_v2.0.a1 Prupe.7G252200_v2.0.a1
pyrus_communis pycom02g01670
rosa_chinensis RchiOBHm_Chr2g0087101
rosa_laevigata RLG00000015832
rosa_multiflora Rmu_ssc0000239.1_g000001
rosa_roxburghii Rroxscaffold_2G00153880 Rroxscaffold_7G00210780
rosa_rugosa Rorug01G0472500 Rorug01G0472500
rosa_wichuraiana Rw2G002050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 217
AclWI GGATC 2 cut(s) 130, 332
AcuI CTGAAG 1 cut(s) 375
AgsI TTSAA 2 cut(s) 188, 199
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 4 cut(s) 33, 59, 161, 177
AluI AGCT 4 cut(s) 33, 59, 161, 177
Alw21I GWGCWC 1 cut(s) 17
AlwI GGATC 2 cut(s) 130, 332
AlwNI CAGNNNCTG 2 cut(s) 36, 341
Aor13HI TCCGGA 1 cut(s) 217
ApeKI GCWGC 2 cut(s) 83, 161
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 377
AvaII GGWCC 1 cut(s) 215
AxyI CCTNAGG 2 cut(s) 279, 342
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 2 cut(s) 70, 148
BciT130I CCWGG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 2 cut(s) 84, 162
BlsI GCNGC 2 cut(s) 85, 163
Bme1390I CCNGG 1 cut(s) 213
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 1 cut(s) 213
BmsI GCATC 6 cut(s) 220, 283, 322, 358, 403, 427
BplI GAGNNNNNCTC 2 cut(s) 296, 328
BsaBI GATNNNNATC 1 cut(s) 336
BsaWI WCCGGW 1 cut(s) 217
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse1I ACTGG 2 cut(s) 124, 234
Bse21I CCTNAGG 2 cut(s) 279, 342
Bse8I GATNNNNATC 1 cut(s) 336
BseAI TCCGGA 1 cut(s) 217
BseBI CCWGG 1 cut(s) 213
BseGI GGATG 4 cut(s) 352, 409, 442, 451
BseJI GATNNNNATC 1 cut(s) 336
BseMII CTCAG 4 cut(s) 12, 270, 327, 333
BseNI ACTGG 2 cut(s) 124, 234
BseRI GAGGAG 5 cut(s) 7, 296, 479, 482, 485
BseXI GCAGC 2 cut(s) 70, 148
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 2 cut(s) 171, 218
Bsp1286I GDGCHC 1 cut(s) 17
Bsp13I TCCGGA 1 cut(s) 217
Bsp143I GATC 2 cut(s) 122, 337
BspCNI CTCAG 4 cut(s) 13, 271, 326, 334
BspEI TCCGGA 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 477
BspMAI CTGCAG 1 cut(s) 166
BspPI GGATC 2 cut(s) 130, 332
BsrI ACTGG 2 cut(s) 124, 234
BssMI GATC 2 cut(s) 122, 337
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 76
Bst6I CTCTTC 2 cut(s) 447, 456
BstDEI CTNAG 4 cut(s) 21, 279, 313, 342
BstF5I GGATG 4 cut(s) 352, 409, 442, 451
BstKTI GATC 2 cut(s) 125, 340
BstMBI GATC 2 cut(s) 122, 337
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 211
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 70, 148
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
Bsu36I CCTNAGG 2 cut(s) 279, 342
BtsCI GGATG 4 cut(s) 352, 409, 442, 451
BtsIMutI CAGTG 2 cut(s) 72, 241
CaiI CAGNNNCTG 2 cut(s) 36, 341
Cfr13I GGNCC 1 cut(s) 215
CsiI ACCWGGT 1 cut(s) 211
CviJI RGCY 8 cut(s) 8, 33, 45, 59, 161, 177, 359, 484
CviKI_1 RGCY 8 cut(s) 8, 33, 45, 59, 161, 177, 359, 484
DdeI CTNAG 4 cut(s) 21, 279, 313, 342
DpnI GATC 2 cut(s) 124, 339
DpnII GATC 2 cut(s) 122, 337
Eam1104I CTCTTC 2 cut(s) 447, 456
EarI CTCTTC 2 cut(s) 447, 456
Eco32I GATATC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 375
Eco81I CCTNAGG 2 cut(s) 279, 342
EcoRII CCWGG 1 cut(s) 211
EcoRV GATATC 1 cut(s) 139
FaiI YATR 1 cut(s) 62
FalI AAGNNNNNCTT 2 cut(s) 166, 198
Fnu4HI GCNGC 2 cut(s) 84, 162
FokI GGATG 4 cut(s) 359, 416, 449, 458
Fsp4HI GCNGC 2 cut(s) 84, 162
GluI GCNGC 2 cut(s) 84, 162
HapII CCGG 2 cut(s) 171, 218
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HindIII AAGCTT 1 cut(s) 175
HpaII CCGG 2 cut(s) 171, 218
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 2 cut(s) 218, 341
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 317
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 5 cut(s) 164, 296, 335, 371, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 4 cut(s) 21, 279, 313, 342
Kpn2I TCCGGA 1 cut(s) 217
Kzo9I GATC 2 cut(s) 122, 337
LmnI GCTCC 1 cut(s) 20
Lsp1109I GCAGC 2 cut(s) 70, 148
LweI GCATC 6 cut(s) 220, 283, 322, 358, 403, 427
MabI ACCWGGT 1 cut(s) 211
MaeIII GTNAC 1 cut(s) 236
MalI GATC 2 cut(s) 124, 339
MboI GATC 2 cut(s) 122, 337
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 2 cut(s) 155, 200
MroI TCCGGA 1 cut(s) 217
MspI CCGG 2 cut(s) 171, 218
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 167
NdeII GATC 2 cut(s) 122, 337
NlaIV GGNNCC 1 cut(s) 477
NmuCI GTSAC 1 cut(s) 236
PkrI GCNGC 2 cut(s) 85, 163
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 1 cut(s) 215
PstI CTGCAG 1 cut(s) 166
PstNI CAGNNNCTG 2 cut(s) 36, 341
PsuI RGATCY 1 cut(s) 337
SatI GCNGC 2 cut(s) 84, 162
Sau3AI GATC 2 cut(s) 122, 337
Sau96I GGNCC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 213
SduI GDGCHC 1 cut(s) 17
SetI ASST 7 cut(s) 35, 61, 163, 179, 214, 355, 477
SexAI ACCWGGT 1 cut(s) 211
SfaNI GCATC 6 cut(s) 220, 283, 322, 358, 403, 427
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 215
Sse9I AATT 2 cut(s) 155, 200
StyD4I CCNGG 1 cut(s) 211
TaaI ACNGT 1 cut(s) 76
TasI AATT 2 cut(s) 155, 200
TscAI CASTG 2 cut(s) 79, 241
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 2 cut(s) 83, 161
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 4 cut(s) 146, 363, 441, 462
TspRI CASTG 2 cut(s) 79, 241
VpaK11BI GGWCC 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.