Rroxscaffold_2G00153880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0016721
Physical Location & Seq
Forward (+)
90609625 .. 90611690
2066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00153880.1

Sequence Viewer

Length: 432 bp
ATGGTGGTCAACACTGTTCTGGCTGCTCACAACTCTCTTGCTCTGTTGCTCTTGGCGACTGGATCGCTGATGAATGATATCGATGTGTCGCCAAAATTAGCTGCAGTCGCCGGAAGCTTTCCTTTTGAAGAACTTTTCAAATTGGAAAAACCTGGTCCGGAAAACAAAGATGCCAGCGACACAGAAGATGACGAGGAAGATGATGATGATGATGTGCCTGAGGAGGAAGATGATGCAGGAGATGAGGACTTCTCAGGCGAAGAAGGGGAAGATGCAGATCCTGAGGATGAGCCTGAAGCCAATGGTGATGGAGGAAGTGATGATGATGATGATGAGGATGAGGATGATGATGATGGTGACGATGATGAAGATGAGGATGCAGAGGATGAAGAAGAGGAAGAAGAGGAGGAGGGTTCCGCAGCCTCCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.32

Weight (kDa)

4.05

Isoelectric Point (pI)

64.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016721)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02080
malus_domestica MD02G1018600.v1.1 MD15G1162600.v1.1
prunus_persica Prupe.7G252200_v2.0.a1 Prupe.7G252200_v2.0.a1
pyrus_communis pycom02g01670
rosa_chinensis RchiOBHm_Chr2g0087101
rosa_laevigata RLG00000015832
rosa_multiflora Rmu_ssc0000239.1_g000001
rosa_roxburghii Rroxscaffold_2G00153880 Rroxscaffold_7G00210780
rosa_rugosa Rorug01G0472500 Rorug01G0472500
rosa_wichuraiana Rw2G002050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 157
AciI CCGC 1 cut(s) 417
AclWI GGATC 2 cut(s) 70, 272
AcuI CTGAAG 1 cut(s) 315
AgsI TTSAA 2 cut(s) 128, 139
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 2 cut(s) 101, 117
AluI AGCT 2 cut(s) 101, 117
AlwI GGATC 2 cut(s) 70, 272
AlwNI CAGNNNCTG 1 cut(s) 281
Aor13HI TCCGGA 1 cut(s) 157
ApeKI GCWGC 3 cut(s) 23, 101, 419
AspS9I GGNCC 1 cut(s) 155
AsuHPI GGTGA 2 cut(s) 317, 368
AvaII GGWCC 1 cut(s) 155
AxyI CCTNAGG 2 cut(s) 219, 282
BbvI GCAGC 2 cut(s) 10, 88
BccI CCATC 2 cut(s) 302, 347
BciT130I CCWGG 1 cut(s) 153
BfmI CTRYAG 1 cut(s) 102
BisI GCNGC 3 cut(s) 24, 102, 420
BlsI GCNGC 3 cut(s) 25, 103, 421
Bme1390I CCNGG 1 cut(s) 153
Bme18I GGWCC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 415
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 4 cut(s) 160, 223, 262, 367
BplI GAGNNNNNCTC 2 cut(s) 236, 268
Bsa29I ATCGAT 1 cut(s) 81
BsaBI GATNNNNATC 1 cut(s) 276
BsaWI WCCGGW 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 64
Bse21I CCTNAGG 2 cut(s) 219, 282
Bse8I GATNNNNATC 1 cut(s) 276
BseAI TCCGGA 1 cut(s) 157
BseBI CCWGG 1 cut(s) 153
BseCI ATCGAT 1 cut(s) 81
BseGI GGATG 5 cut(s) 292, 343, 349, 382, 391
BseJI GATNNNNATC 1 cut(s) 276
BseMII CTCAG 3 cut(s) 210, 267, 273
BseNI ACTGG 1 cut(s) 64
BseRI GAGGAG 3 cut(s) 236, 419, 422
BseXI GCAGC 2 cut(s) 10, 88
BshVI ATCGAT 1 cut(s) 81
BsiSI CCGG 2 cut(s) 111, 158
Bsp13I TCCGGA 1 cut(s) 157
Bsp143I GATC 2 cut(s) 62, 277
BspACI CCGC 1 cut(s) 417
BspCNI CTCAG 3 cut(s) 211, 266, 274
BspDI ATCGAT 1 cut(s) 81
BspEI TCCGGA 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 415
BspMAI CTGCAG 1 cut(s) 106
BspPI GGATC 2 cut(s) 70, 272
BsrI ACTGG 1 cut(s) 64
BssMI GATC 2 cut(s) 62, 277
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 2 cut(s) 387, 396
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 3 cut(s) 219, 253, 282
BstF5I GGATG 5 cut(s) 292, 343, 349, 382, 391
BstKTI GATC 2 cut(s) 65, 280
BstMBI GATC 2 cut(s) 62, 277
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 10, 88
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
Bsu15I ATCGAT 1 cut(s) 81
Bsu36I CCTNAGG 2 cut(s) 219, 282
BsuTUI ATCGAT 1 cut(s) 81
BtsCI GGATG 5 cut(s) 292, 343, 349, 382, 391
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 175
CaiI CAGNNNCTG 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 155
ClaI ATCGAT 1 cut(s) 81
CsiI ACCWGGT 1 cut(s) 151
CviJI RGCY 6 cut(s) 23, 101, 117, 292, 299, 422
CviKI_1 RGCY 6 cut(s) 23, 101, 117, 292, 299, 422
DdeI CTNAG 3 cut(s) 219, 253, 282
DpnI GATC 2 cut(s) 64, 279
DpnII GATC 2 cut(s) 62, 277
Eam1104I CTCTTC 2 cut(s) 387, 396
EarI CTCTTC 2 cut(s) 387, 396
Eco32I GATATC 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 315
Eco81I CCTNAGG 2 cut(s) 219, 282
EcoRII CCWGG 1 cut(s) 151
EcoRV GATATC 1 cut(s) 79
FalI AAGNNNNNCTT 2 cut(s) 106, 138
Fnu4HI GCNGC 3 cut(s) 24, 102, 420
FokI GGATG 5 cut(s) 299, 350, 356, 389, 398
Fsp4HI GCNGC 3 cut(s) 24, 102, 420
GluI GCNGC 3 cut(s) 24, 102, 420
HapII CCGG 2 cut(s) 111, 158
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HindIII AAGCTT 1 cut(s) 115
HpaII CCGG 2 cut(s) 111, 158
HphI GGTGA 2 cut(s) 317, 368
Hpy166II GTNNAC 1 cut(s) 10
Hpy188III TCNNGA 2 cut(s) 158, 281
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 4 cut(s) 104, 236, 275, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 3 cut(s) 219, 253, 282
Kpn2I TCCGGA 1 cut(s) 157
Kzo9I GATC 2 cut(s) 62, 277
Lsp1109I GCAGC 2 cut(s) 10, 88
LweI GCATC 4 cut(s) 160, 223, 262, 367
MabI ACCWGGT 1 cut(s) 151
MaeIII GTNAC 1 cut(s) 356
MalI GATC 2 cut(s) 64, 279
MboI GATC 2 cut(s) 62, 277
MflI RGATCY 1 cut(s) 277
MluCI AATT 2 cut(s) 95, 140
MroI TCCGGA 1 cut(s) 157
MspI CCGG 2 cut(s) 111, 158
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 107
NdeII GATC 2 cut(s) 62, 277
NlaIV GGNNCC 1 cut(s) 415
NmuCI GTSAC 1 cut(s) 356
PkrI GCNGC 3 cut(s) 25, 103, 421
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 415
PspPI GGNCC 1 cut(s) 155
PstI CTGCAG 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 281
PsuI RGATCY 1 cut(s) 277
SatI GCNGC 3 cut(s) 24, 102, 420
Sau3AI GATC 2 cut(s) 62, 277
Sau96I GGNCC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 153
SetI ASST 3 cut(s) 103, 119, 154
SexAI ACCWGGT 1 cut(s) 151
SfaNI GCATC 4 cut(s) 160, 223, 262, 367
SfcI CTRYAG 1 cut(s) 102
SinI GGWCC 1 cut(s) 155
Sse9I AATT 2 cut(s) 95, 140
SsiI CCGC 1 cut(s) 417
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 16
TaqI TCGA 1 cut(s) 81
TasI AATT 2 cut(s) 95, 140
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 356
TseI GCWGC 3 cut(s) 23, 101, 419
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 3 cut(s) 86, 381, 402
TspRI CASTG 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.