Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0016721

Physical Location & Seq

Genomic Coordinates Reverse (-)

1754275 .. 1756507

Gene Structure 2233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015832

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAGGCTTTGTGCTCCTCTGAGAGAAACAGGTTCTGGGTCGGCTCTGTTTTGGAAGCTATGGTGGTCAACACTGTTCTTGCTGCTCACAACTCTCTTGCTCTGTTGCTCTTGGCGACTGGATCGCTGATGAATGATATCAATGTGTCGCCAAAATTAGCTGCAGTCGCTGGAAGCTTTCCTTTTGAAGAACTTTTCAAATTGGAAAAACCTGGTCCGGAAAACAAAGATGCCAGCGACACAGAAGATGACGAGGAAGATGATGATGATGATGTGCCTGAGGAGGAAGATGATGCAGGAGATGAGGACTTCTCAGGCGAAGAAGGGGAAGATGCAGATCCTGAGGATGAGCCTGAAGCCAATGGTGATGGAGGAAGTGATGACGATGATGACGAGGACGAGGATGATGATGATGGTGACGATGATGAAGATGAGGATGCAGAGGATGAAGAAGAGGAAGAAGAGGAGGAGGAGGTTCCGCAGCCTCCTGCTAAAAAGAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.37

Weight (kDa)

4.05

Isoelectric Point (pI)

65.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016721)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02080
malus_domestica	MD02G1018600.v1.1 MD15G1162600.v1.1
prunus_persica	Prupe.7G252200_v2.0.a1 Prupe.7G252200_v2.0.a1
pyrus_communis	pycom02g01670
rosa_chinensis	RchiOBHm_Chr2g0087101
rosa_laevigata	RLG00000015832
rosa_multiflora	Rmu_ssc0000239.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153880 Rroxscaffold_7G00210780
rosa_rugosa	Rorug01G0472500 Rorug01G0472500
rosa_wichuraiana	Rw2G002050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	217
AciI	CCGC	1 cut(s)	479
AclWI	GGATC	2 cut(s)	130, 332
AcuI	CTGAAG	1 cut(s)	375
AgsI	TTSAA	2 cut(s)	188, 199
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	3 cut(s)	59, 161, 177
AluI	AGCT	3 cut(s)	59, 161, 177
Alw21I	GWGCWC	1 cut(s)	17
AlwI	GGATC	2 cut(s)	130, 332
AlwNI	CAGNNNCTG	3 cut(s)	36, 170, 341
Aor13HI	TCCGGA	1 cut(s)	217
ApeKI	GCWGC	3 cut(s)	83, 161, 481
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	377, 428
AvaII	GGWCC	1 cut(s)	215
AxyI	CCTNAGG	2 cut(s)	279, 342
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	3 cut(s)	70, 148, 493
BccI	CCATC	2 cut(s)	362, 407
BciT130I	CCWGG	1 cut(s)	213
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	3 cut(s)	84, 162, 482
BlsI	GCNGC	3 cut(s)	85, 163, 483
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	4 cut(s)	220, 283, 322, 427
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
BsaBI	GATNNNNATC	1 cut(s)	336
BsaWI	WCCGGW	1 cut(s)	217
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	124
Bse21I	CCTNAGG	2 cut(s)	279, 342
Bse8I	GATNNNNATC	1 cut(s)	336
BseAI	TCCGGA	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	213
BseGI	GGATG	4 cut(s)	352, 409, 442, 451
BseJI	GATNNNNATC	1 cut(s)	336
BseMII	CTCAG	4 cut(s)	12, 270, 327, 333
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	5 cut(s)	7, 296, 479, 482, 485
BseXI	GCAGC	3 cut(s)	70, 148, 493
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp13I	TCCGGA	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	122, 337
BspACI	CCGC	1 cut(s)	479
BspCNI	CTCAG	4 cut(s)	13, 271, 326, 334
BspEI	TCCGGA	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	477
BspMAI	CTGCAG	1 cut(s)	166
BspPI	GGATC	2 cut(s)	130, 332
BsrI	ACTGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	122, 337
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	2 cut(s)	447, 456
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	4 cut(s)	21, 279, 313, 342
BstF5I	GGATG	4 cut(s)	352, 409, 442, 451
BstKTI	GATC	2 cut(s)	125, 340
BstMBI	GATC	2 cut(s)	122, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	3 cut(s)	70, 148, 493
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
Bsu36I	CCTNAGG	2 cut(s)	279, 342
BtsCI	GGATG	4 cut(s)	352, 409, 442, 451
BtsIMutI	CAGTG	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	235
CaiI	CAGNNNCTG	3 cut(s)	36, 170, 341
Cfr13I	GGNCC	1 cut(s)	215
CsiI	ACCWGGT	1 cut(s)	211
CviJI	RGCY	8 cut(s)	8, 45, 59, 161, 177, 352, 359, 484
CviKI_1	RGCY	8 cut(s)	8, 45, 59, 161, 177, 352, 359, 484
DdeI	CTNAG	4 cut(s)	21, 279, 313, 342
DpnI	GATC	2 cut(s)	124, 339
DpnII	GATC	2 cut(s)	122, 337
Eam1104I	CTCTTC	2 cut(s)	447, 456
EarI	CTCTTC	2 cut(s)	447, 456
Eco32I	GATATC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	375
Eco81I	CCTNAGG	2 cut(s)	279, 342
EcoRII	CCWGG	1 cut(s)	211
EcoRV	GATATC	1 cut(s)	139
FaiI	YATR	1 cut(s)	62
FalI	AAGNNNNNCTT	2 cut(s)	166, 198
Fnu4HI	GCNGC	3 cut(s)	84, 162, 482
FokI	GGATG	4 cut(s)	359, 416, 449, 458
Fsp4HI	GCNGC	3 cut(s)	84, 162, 482
GluI	GCNGC	3 cut(s)	84, 162, 482
HapII	CCGG	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HindIII	AAGCTT	1 cut(s)	175
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	2 cut(s)	377, 428
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	2 cut(s)	218, 341
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	4 cut(s)	164, 296, 335, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	4 cut(s)	21, 279, 313, 342
Kpn2I	TCCGGA	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	122, 337
LmnI	GCTCC	1 cut(s)	20
Lsp1109I	GCAGC	3 cut(s)	70, 148, 493
LweI	GCATC	4 cut(s)	220, 283, 322, 427
MabI	ACCWGGT	1 cut(s)	211
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	2 cut(s)	124, 339
MboI	GATC	2 cut(s)	122, 337
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	2 cut(s)	155, 200
MroI	TCCGGA	1 cut(s)	217
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeII	GATC	2 cut(s)	122, 337
NlaIV	GGNNCC	1 cut(s)	477
NmuCI	GTSAC	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PkrI	GCNGC	3 cut(s)	85, 163, 483
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	166
PstNI	CAGNNNCTG	3 cut(s)	36, 170, 341
PsuI	RGATCY	1 cut(s)	337
SatI	GCNGC	3 cut(s)	84, 162, 482
Sau3AI	GATC	2 cut(s)	122, 337
Sau96I	GGNCC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	6 cut(s)	35, 61, 163, 179, 214, 477
SexAI	ACCWGGT	1 cut(s)	211
SfaNI	GCATC	4 cut(s)	220, 283, 322, 427
SfcI	CTRYAG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	215
Sse9I	AATT	2 cut(s)	155, 200
SsiI	CCGC	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	76
TasI	AATT	2 cut(s)	155, 200
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	3 cut(s)	83, 161, 481
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	3 cut(s)	146, 441, 462
TspRI	CASTG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.