FvH4_1g03060

Equilibrative nucleotide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013473
Physical Location & Seq
Forward (+)
1732762 .. 1734208
1447 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03060.t1

Sequence Viewer

Length: 1188 bp
ATGGAGAATGGAGTGAAGGGCCTTGAATTCCAAGATGAGCCAAGAGATACTTACAAGATTGCTTACATTATTCACTTCTTGCTTGGAGCAGGCAATTTGCTTCCTTGGAATGCATTCATCACTGCTGTCGATTACTTTGGCTATCTCTATCCAACCAAGCATGTCGAGAAGGTCTTCTCTGTAGCTTACATGAGTTCTTCAGTGCTAGTTCTGGTTGTGATGATGACTTGGGGTTGCTGGTGGGAGAGAATGAGCCCTAGGCTAAGACTCAACTTGGGGTTTTTGATGTTTATTCTCTCGTTAACCGCAGCTCCTATCATAGATTGGGCAAGTTGTCATAGTACTAATGCAGCTTATGGTGTGACAGTTGCATCAGTTGTAATATGTGGCTTAGCTGATGGCTTGGTAGGTGGAAGCTTAATGGGATCAGCAGGAAAGCTTCCCAAAAAGTATATGCAGGCTGTTTTTGCTGGCACTGCTTCTTCAGGTGTTATAATTTGTGTCCTGAGAATTTCAACAAAGGCAATGCTTCCACAGACCCCAAAAGGACTCAAAACAAGTGCCCACTTGTATTTTATCGTCAGCATCATTATACTCTTATGCTGCATCCTTTGCTCCAATTTGCTATACAAGCTGAGAGTCATGCAGGAACACTGTAGACTTGTGCAGGATCAATCCTTTTGCTGCTCACCGAGGCCGAAATTTTGGGCTGTGGCGCGAAAGATTCCTGGGCCAGCTTTTGGGATGTTCATAATATATACAGTGACTCTATCAATTTTCCCAGGATTTATAGCTGAAAATCTGGAATCCAAGCTTCTTCAAGATTGGTATCCCATTTTGCTGATCACTGTGTACAACTTTGCAGATTTAGTAGGTAAATCCTTGACTGCAATTTACCTTCTGAAGAGTATCAAAAAGGCAACATGGGCATGTGTTACCAGACTCATATTCTATCCAATCTTCACTGCTTGCCTCCATGGACCAACATGGTTGAAAACTGAAGTCCCTATGATCTTTCTCACATTTATGCTTGGACTGTCCAATGGTTACCTCACAAGTGCCATCATGATGACAGTTCCAAAACTAGTACCAGTTCCAGAAGCAGAACTATCTGCAATTGTAATGGTTGTGTTCCTTGGAGTCGGGTTGGTTAGCGGTTCGGTTATAGGCTGGCTCTGGATATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleoside_tran

Protein Analysis

396

Amino Acids

43.73

Weight (kDa)

9.05

Isoelectric Point (pI)

28.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoside_tran PF01733 124 - 221 3.7e-21 Nucleoside transporter
Nucleoside_tran PF01733 234 - 393 1.7e-35 Nucleoside transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02630 AT1G02630
fragaria_vesca FvH4_1g03060
malus_domestica MD02G1029900.v1.1 MD15G1171300.v1.1
prunus_persica Prupe.7G245000_v2.0.a1
pyrus_communis pycom02g02490 pycom15g15290
rosa_chinensis RchiOBHm_Chr2g0088191
rosa_laevigata RLG00000015930
rosa_multiflora Rmu_sc0003275.1_g000069
rosa_roxburghii Rroxscaffold_2G00152840
rosa_rugosa Rorug01G0481700
rosa_samantha Rh2AG036700 Rh2BG035900 Rh2CG037000 Rh2DG036400
rosa_wichuraiana Rw2G002890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 494
AccB7I CCANNNNNTGG 1 cut(s) 740
AccI GTMKAC 1 cut(s) 658
AccII CGCG 1 cut(s) 718
AciI CCGC 2 cut(s) 306, 1155
AclWI GGATC 2 cut(s) 433, 678
AcsI RAATTY 3 cut(s) 26, 510, 701
AcuI CTGAAG 4 cut(s) 183, 468, 923, 1020
AfaI GTAC 3 cut(s) 343, 854, 1089
AfiI CCNNNNNNNGG 1 cut(s) 740
AgsI TTSAA 4 cut(s) 26, 516, 821, 994
AhlI ACTAGT 1 cut(s) 1084
AjnI CCWGG 2 cut(s) 727, 781
AlwI GGATC 2 cut(s) 433, 678
AoxI GGCC 3 cut(s) 19, 695, 731
ApeKI GCWGC 4 cut(s) 308, 350, 603, 684
ApoI RAATTY 3 cut(s) 26, 510, 701
Asp700I GAANNNNTTC 2 cut(s) 113, 173
AspA2I CCTAGG 1 cut(s) 257
AspLEI GCGC 1 cut(s) 718
AspS9I GGNCC 3 cut(s) 19, 731, 980
AsuHPI GGTGA 1 cut(s) 681
AvaII GGWCC 1 cut(s) 980
AvrII CCTAGG 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 565
BanII GRGCYC 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 166
BbvI GCAGC 4 cut(s) 320, 362, 590, 671
BccI CCATC 2 cut(s) 392, 1070
BciT130I CCWGG 2 cut(s) 729, 783
BciVI GTATCC 1 cut(s) 840
BclI TGATCA 1 cut(s) 843
BcuI ACTAGT 1 cut(s) 1084
BfaI CTAG 3 cut(s) 206, 258, 1085
BfmI CTRYAG 2 cut(s) 180, 655
BfuI GTATCC 1 cut(s) 840
BisI GCNGC 4 cut(s) 309, 351, 604, 685
BlnI CCTAGG 1 cut(s) 257
BlpI GCTNAGC 1 cut(s) 391
BlsI GCNGC 4 cut(s) 310, 352, 605, 686
BmcAI AGTACT 1 cut(s) 343
Bme1390I CCNGG 2 cut(s) 729, 783
Bme18I GGWCC 1 cut(s) 980
BmgT120I GGNCC 3 cut(s) 19, 731, 980
BmrFI CCNGG 2 cut(s) 729, 783
BmsI GCATC 3 cut(s) 380, 594, 615
BpiI GAAGAC 1 cut(s) 166
Bpu1102I GCTNAGC 1 cut(s) 391
BsaBI GATNNNNATC 1 cut(s) 828
BsaJI CCNNGG 7 cut(s) 104, 257, 692, 728, 781, 976, 1135
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bsc4I CCNNNNNNNGG 1 cut(s) 740
Bse1I ACTGG 1 cut(s) 1091
Bse3DI GCAATG 1 cut(s) 531
Bse8I GATNNNNATC 1 cut(s) 828
BseBI CCWGG 2 cut(s) 729, 783
BseDI CCNNGG 7 cut(s) 104, 257, 692, 728, 781, 976, 1135
BseGI GGATG 2 cut(s) 606, 750
BseJI GATNNNNATC 1 cut(s) 828
BseLI CCNNNNNNNGG 1 cut(s) 740
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 2 cut(s) 497, 626
BseNI ACTGG 1 cut(s) 1091
BseSI GKGCMC 1 cut(s) 565
BseXI GCAGC 4 cut(s) 320, 362, 590, 671
BsgI GTGCAG 1 cut(s) 686
Bsh1236I CGCG 1 cut(s) 718
BshFI GGCC 3 cut(s) 21, 697, 733
BslFI GGGAC 1 cut(s) 989
BslI CCNNNNNNNGG 1 cut(s) 740
BsmFI GGGAC 1 cut(s) 989
BsmI GAATGC 2 cut(s) 113, 115
BsnI GGCC 3 cut(s) 21, 697, 733
Bsp1286I GDGCHC 2 cut(s) 257, 565
Bsp1407I TGTACA 1 cut(s) 852
Bsp143I GATC 4 cut(s) 425, 670, 843, 1011
Bsp1720I GCTNAGC 1 cut(s) 391
Bsp19I CCATGG 1 cut(s) 976
BspACI CCGC 2 cut(s) 306, 1155
BspANI GGCC 3 cut(s) 21, 697, 733
BspCNI CTCAG 2 cut(s) 498, 627
BspFNI CGCG 1 cut(s) 718
BspHI TCATGA 1 cut(s) 1065
BspPI GGATC 2 cut(s) 433, 678
BsrDI GCAATG 1 cut(s) 531
BsrGI TGTACA 1 cut(s) 852
BsrI ACTGG 1 cut(s) 1091
BssECI CCNNGG 7 cut(s) 104, 257, 692, 728, 781, 976, 1135
BssMI GATC 4 cut(s) 425, 670, 843, 1011
BssT1I CCWWGG 4 cut(s) 104, 257, 976, 1135
Bst2UI CCWGG 2 cut(s) 729, 783
Bst4CI ACNGT 6 cut(s) 367, 656, 763, 850, 1038, 1075
Bst6I CTCTTC 1 cut(s) 899
BstAPI GCANNNNNTGC 1 cut(s) 612
BstAUI TGTACA 1 cut(s) 852
BstC8I GCNNGC 6 cut(s) 91, 459, 472, 735, 970, 1172
BstDEI CTNAG 4 cut(s) 263, 391, 506, 635
BstDSI CCRYGG 1 cut(s) 976
BstEII GGTNACC 1 cut(s) 1046
BstF5I GGATG 2 cut(s) 606, 750
BstFNI CGCG 1 cut(s) 718
BstHHI GCGC 1 cut(s) 718
BstKTI GATC 4 cut(s) 428, 673, 846, 1014
BstMBI GATC 4 cut(s) 425, 670, 843, 1011
BstMWI GCNNNNNNNGC 5 cut(s) 467, 476, 612, 631, 926
BstNI CCWGG 2 cut(s) 729, 783
BstNSI RCATGY 2 cut(s) 164, 933
BstPI GGTNACC 1 cut(s) 1046
BstSCI CCNGG 2 cut(s) 727, 781
BstSFI CTRYAG 2 cut(s) 180, 655
BstSLI GKGCMC 1 cut(s) 565
BstUI CGCG 1 cut(s) 718
BstV1I GCAGC 4 cut(s) 320, 362, 590, 671
BstV2I GAAGAC 1 cut(s) 166
BsuI GTATCC 1 cut(s) 840
BsuRI GGCC 3 cut(s) 21, 697, 733
BtgI CCRYGG 1 cut(s) 976
BtsCI GGATG 2 cut(s) 606, 750
BtsI GCAGTG 3 cut(s) 120, 474, 963
BtsIMutI CAGTG 7 cut(s) 120, 207, 474, 652, 768, 846, 963
Cac8I GCNNGC 6 cut(s) 91, 459, 472, 735, 970, 1172
CciI TCATGA 1 cut(s) 1065
CfoI GCGC 1 cut(s) 718
Cfr13I GGNCC 3 cut(s) 19, 731, 980
Csp6I GTAC 3 cut(s) 342, 853, 1088
CviAII CATG 8 cut(s) 161, 190, 643, 924, 930, 977, 987, 1066
CviQI GTAC 3 cut(s) 342, 853, 1088
DdeI CTNAG 4 cut(s) 263, 391, 506, 635
DpnI GATC 4 cut(s) 427, 672, 845, 1013
DpnII GATC 4 cut(s) 425, 670, 843, 1011
Eam1104I CTCTTC 1 cut(s) 899
EarI CTCTTC 1 cut(s) 899
Eco130I CCWWGG 4 cut(s) 104, 257, 976, 1135
Eco24I GRGCYC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 980
Eco57I CTGAAG 4 cut(s) 183, 468, 923, 1020
Eco91I GGTNACC 1 cut(s) 1046
EcoO109I RGGNCCY 1 cut(s) 19
EcoO65I GGTNACC 1 cut(s) 1046
EcoRI GAATTC 1 cut(s) 26
EcoRII CCWGG 2 cut(s) 727, 781
EcoT14I CCWWGG 4 cut(s) 104, 257, 976, 1135
EcoT22I ATGCAT 1 cut(s) 115
EcoT38I GRGCYC 1 cut(s) 257
ErhI CCWWGG 4 cut(s) 104, 257, 976, 1135
FaeI CATG 8 cut(s) 164, 193, 646, 927, 933, 980, 990, 1069
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FaqI GGGAC 1 cut(s) 989
FatI CATG 8 cut(s) 160, 189, 642, 923, 929, 976, 986, 1065
FbaI TGATCA 1 cut(s) 843
FblI GTMKAC 1 cut(s) 658
Fnu4HI GCNGC 4 cut(s) 309, 351, 604, 685
FokI GGATG 2 cut(s) 593, 757
FriOI GRGCYC 1 cut(s) 257
Fsp4HI GCNGC 4 cut(s) 309, 351, 604, 685
FspBI CTAG 3 cut(s) 206, 258, 1085
GlaI GCGC 1 cut(s) 717
GluI GCNGC 4 cut(s) 309, 351, 604, 685
HaeIII GGCC 3 cut(s) 21, 697, 733
HhaI GCGC 1 cut(s) 718
Hin1II CATG 8 cut(s) 164, 193, 646, 927, 933, 980, 990, 1069
Hin6I GCGC 1 cut(s) 716
HinP1I GCGC 1 cut(s) 716
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HindIII AAGCTT 3 cut(s) 415, 437, 812
HinfI GANTC 8 cut(s) 267, 549, 639, 724, 766, 806, 942, 1140
HpaI GTTAAC 1 cut(s) 303
HphI GGTGA 1 cut(s) 681
Hpy166II GTNNAC 3 cut(s) 303, 659, 853
Hpy188I TCNGA 1 cut(s) 903
Hpy188III TCNNGA 7 cut(s) 166, 505, 803, 821, 1066, 1097, 1177
Hpy8I GTNNAC 3 cut(s) 303, 659, 853
HpyAV CCTTC 3 cut(s) 10, 163, 908
HpyCH4III ACNGT 6 cut(s) 367, 656, 763, 850, 1038, 1075
HpyF10VI GCNNNNNNNGC 5 cut(s) 467, 476, 612, 631, 926
HpyF3I CTNAG 4 cut(s) 263, 391, 506, 635
Hsp92II CATG 8 cut(s) 164, 193, 646, 927, 933, 980, 990, 1069
HspAI GCGC 1 cut(s) 716
Ksp22I TGATCA 1 cut(s) 843
KspAI GTTAAC 1 cut(s) 303
Kzo9I GATC 4 cut(s) 425, 670, 843, 1011
LmnI GCTCC 3 cut(s) 86, 316, 620
Lsp1109I GCAGC 4 cut(s) 320, 362, 590, 671
LweI GCATC 3 cut(s) 380, 594, 615
MaeI CTAG 3 cut(s) 206, 258, 1085
MaeIII GTNAC 4 cut(s) 361, 763, 934, 1046
MalI GATC 4 cut(s) 427, 672, 845, 1013
MboI GATC 4 cut(s) 425, 670, 843, 1011
MboII GAAGA 6 cut(s) 166, 189, 474, 809, 916, 952
MfeI CAATTG 1 cut(s) 1116
MhlI GDGCHC 2 cut(s) 257, 565
MluCI AATT 9 cut(s) 26, 94, 495, 510, 619, 701, 774, 891, 1116
MlyI GAGTC 6 cut(s) 261, 543, 648, 760, 936, 1149
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 3 cut(s) 687, 983, 1061
Mph1103I ATGCAT 1 cut(s) 115
MroXI GAANNNNTTC 2 cut(s) 113, 173
MseI TTAA 2 cut(s) 302, 419
MslI CAYNNNNRTG 3 cut(s) 928, 1025, 1067
MspR9I CCNGG 2 cut(s) 729, 783
MunI CAATTG 1 cut(s) 1116
Mva1269I GAATGC 2 cut(s) 113, 115
MvaI CCWGG 2 cut(s) 729, 783
MvnI CGCG 1 cut(s) 718
MwoI GCNNNNNNNGC 5 cut(s) 467, 476, 612, 631, 926
NcoI CCATGG 1 cut(s) 976
NdeII GATC 4 cut(s) 425, 670, 843, 1011
NlaIII CATG 8 cut(s) 164, 193, 646, 927, 933, 980, 990, 1069
NmuCI GTSAC 2 cut(s) 361, 763
NsiI ATGCAT 1 cut(s) 115
NspI RCATGY 2 cut(s) 164, 933
PagI TCATGA 1 cut(s) 1065
PctI GAATGC 2 cut(s) 113, 115
PdmI GAANNNNTTC 2 cut(s) 113, 173
PfeI GAWTC 2 cut(s) 724, 806
PflMI CCANNNNNTGG 1 cut(s) 740
PkrI GCNGC 4 cut(s) 310, 352, 605, 686
PleI GAGTC 6 cut(s) 261, 543, 647, 760, 936, 1148
PpsI GAGTC 6 cut(s) 261, 543, 647, 760, 936, 1148
PsiI TTATAA 1 cut(s) 494
Psp6I CCWGG 2 cut(s) 727, 781
PspEI GGTNACC 1 cut(s) 1046
PspGI CCWGG 2 cut(s) 727, 781
PspPI GGNCC 3 cut(s) 19, 731, 980
RsaI GTAC 3 cut(s) 343, 854, 1089
RsaNI GTAC 3 cut(s) 342, 853, 1088
RseI CAYNNNNRTG 3 cut(s) 928, 1025, 1067
SaqAI TTAA 2 cut(s) 302, 419
SatI GCNGC 4 cut(s) 309, 351, 604, 685
Sau3AI GATC 4 cut(s) 425, 670, 843, 1011
Sau96I GGNCC 3 cut(s) 19, 731, 980
ScaI AGTACT 1 cut(s) 343
SchI GAGTC 6 cut(s) 261, 543, 648, 760, 936, 1149
ScrFI CCNGG 2 cut(s) 729, 783
SduI GDGCHC 2 cut(s) 257, 565
SfaNI GCATC 3 cut(s) 380, 594, 615
SfcI CTRYAG 2 cut(s) 180, 655
SinI GGWCC 1 cut(s) 980
SmiMI CAYNNNNRTG 3 cut(s) 928, 1025, 1067
SpeI ACTAGT 1 cut(s) 1084
Sse9I AATT 9 cut(s) 26, 94, 495, 510, 619, 701, 774, 891, 1116
SsiI CCGC 2 cut(s) 306, 1155
SspMI CTAG 3 cut(s) 206, 258, 1085
StyD4I CCNGG 2 cut(s) 727, 781
StyI CCWWGG 4 cut(s) 104, 257, 976, 1135
TaaI ACNGT 6 cut(s) 367, 656, 763, 850, 1038, 1075
TaqI TCGA 2 cut(s) 129, 165
TasI AATT 9 cut(s) 26, 94, 495, 510, 619, 701, 774, 891, 1116
TatI WGTACW 2 cut(s) 341, 852
TfiI GAWTC 2 cut(s) 724, 806
Tru1I TTAA 2 cut(s) 302, 419
Tru9I TTAA 2 cut(s) 302, 419
TscAI CASTG 7 cut(s) 127, 207, 481, 659, 768, 853, 970
TseFI GTSAC 2 cut(s) 361, 763
TseI GCWGC 4 cut(s) 308, 350, 603, 684
Tsp45I GTSAC 2 cut(s) 361, 763
TspDTI ATGAA 2 cut(s) 106, 739
TspRI CASTG 7 cut(s) 127, 207, 481, 659, 768, 853, 970
Van91I CCANNNNNTGG 1 cut(s) 740
VpaK11BI GGWCC 1 cut(s) 980
XapI RAATTY 3 cut(s) 26, 510, 701
XceI RCATGY 2 cut(s) 164, 933
XmaJI CCTAGG 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 658
XmnI GAANNNNTTC 2 cut(s) 113, 173
XspI CTAG 3 cut(s) 206, 258, 1085
ZrmI AGTACT 1 cut(s) 343
Zsp2I ATGCAT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.