MD15G1171300.v1.1

Equilibrative nucleotide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013473
Physical Location & Seq
Forward (+)
13305132 .. 13306744
1613 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1171300.v1.1.491

Sequence Viewer

Length: 1203 bp
ATGGAAGGTGGACTGAAGGTTAGTGTTGAATATCAAGCTGAGCCAAGAGATGCTTACAAGATTGCTTACGTTATTCATTTCTTGCTGGGAGCAGGCAGTTTGCTACCTTGGAATGCATTCATAACCGCCGTTGATTACTTTGGAGGTCTCTATCCGACCAAGCATGTTGAGAAGGTCTTCTCTGTGGCCTATATGAGCTCTTCGTTGCTCGTATTGCTCGTGATGATGAGCTGGAGTAACTGGTGGGAGAAGATGAGTCCTCGGCTGAAACTCAACTTGGGATTTTCTCTGTTTATTCTATCGTTAATGGTAGCCCCAATTACGGGCTGGCTTTCGCGCAGCTCTGCGCTGAGTAGCGGGAGAGCTAATGCAGATTATGGTGTGATAGTTACATCAGTTGTAGTTTGTGGCCTAGCCGATGGCTTGGTAGGAGGAAGCTTGATGGGATCCGCCGGCAAACTTCCGAAAAAATACATGCAAGCTGTTTTTGCAGGAACTGCTTCTTCAGGTGTGATAATTTCTCTGCTGAGGATTTCAACCAAAGCAATGCTTCCACAAACCCCGAAAGGACTACAAACAAGCGCGAATTCGTACTTCATCGTCAGCACCATATTCCTCCTGTGCTGCATCTTTGCCTGCAACTTGTTATACAGGCTGACAGTCATACAGGAACACTGCAGGCTTGCTCAAGACGAACCCTTTTGCGCAAGACCAAAATTTTGGGACGTGGCATGTAAAGTCCCCATGCCAGCTTTTGGGATTTTCGTAACGTATACAGTGACTCTGTCGATTTTCCCTGGATTTATCGCCGAAAGTCTCGAATCCAAGCTTCTTCAAGATTGGTATCCTATTTTGCTGATCACAGTGTACAATGTTGCAGATTTAGTGGGAAAATCTTTGACTGCAGTTTATCTTCTAAAAAGTATTAAAAGGGCAACATTGGCTTGCATTACAAGGCTCCTATTCTATCCAATCTTCACTGCTTGCCTCCATGGACCTCCATGGCTGAAAGCTGAAACTCCAATGGTGGCTCTTACATTTATGCTTGGACTGACAAATGGTTATCTGACAAGCGTTCTCATGATGATTGTTCCGAAAACTGTGCCGGTTTCGGAAGCAGAGCTGTCTGCAATTGTAATGGTGGTGTTCCTTGGAGTTGGCTTGGTTAGCGGTTCGGTTCTCGGGTGGTTCTGGATTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleoside_tran

Protein Analysis

401

Amino Acids

43.74

Weight (kDa)

9.03

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoside_tran PF01733 131 - 228 8.3e-20 Nucleoside transporter
Nucleoside_tran PF01733 239 - 398 7.6e-37 Nucleoside transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02630 AT1G02630
fragaria_vesca FvH4_1g03060
malus_domestica MD02G1029900.v1.1 MD15G1171300.v1.1
prunus_persica Prupe.7G245000_v2.0.a1
pyrus_communis pycom02g02490 pycom15g15290
rosa_chinensis RchiOBHm_Chr2g0088191
rosa_laevigata RLG00000015930
rosa_multiflora Rmu_sc0003275.1_g000069
rosa_roxburghii Rroxscaffold_2G00152840
rosa_rugosa Rorug01G0481700
rosa_samantha Rh2AG036700 Rh2BG035900 Rh2CG037000 Rh2DG036400
rosa_wichuraiana Rw2G002890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 706
AccB7I CCANNNNNTGG 1 cut(s) 755
AccI GTMKAC 1 cut(s) 773
AccII CGCG 2 cut(s) 337, 584
AciI CCGC 4 cut(s) 126, 357, 450, 1170
AclWI GGATC 2 cut(s) 441, 454
AcsI RAATTY 2 cut(s) 586, 716
AcuI CTGAAG 2 cut(s) 35, 489
AfaI GTAC 2 cut(s) 593, 869
AfiI CCNNNNNNNGG 3 cut(s) 322, 323, 755
AgsI TTSAA 3 cut(s) 29, 537, 836
AjiI CACGTC 1 cut(s) 727
AjnI CCWGG 1 cut(s) 796
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
Alw21I GWGCWC 1 cut(s) 200
Alw26I GTCTC 2 cut(s) 152, 821
AlwI GGATC 2 cut(s) 441, 454
AlwNI CAGNNNCTG 1 cut(s) 497
Ama87I CYCGRG 1 cut(s) 1181
AoxI GGCC 2 cut(s) 186, 409
ApeKI GCWGC 2 cut(s) 339, 624
ApoI RAATTY 2 cut(s) 586, 716
ArsI GACNNNNNNTTYG 2 cut(s) 702, 734
Asp700I GAANNNNTTC 3 cut(s) 116, 176, 499
AspLEI GCGC 4 cut(s) 339, 349, 584, 707
AspS9I GGNCC 1 cut(s) 995
AvaI CYCGRG 1 cut(s) 1181
AvaII GGWCC 1 cut(s) 995
BamHI GGATCC 1 cut(s) 446
BanII GRGCYC 1 cut(s) 200
BauI CACGAG 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 200
BbvCI CCTCAGC 1 cut(s) 527
BbvI GCAGC 2 cut(s) 351, 611
BccI CCATC 2 cut(s) 413, 436
BceAI ACGGC 1 cut(s) 113
BcgI CGANNNNNNTGC 2 cut(s) 1084, 1118
BciT130I CCWGG 1 cut(s) 798
BciVI GTATCC 1 cut(s) 855
BclI TGATCA 1 cut(s) 858
BcoDI GTCTC 2 cut(s) 152, 821
BfaI CTAG 1 cut(s) 413
BfmI CTRYAG 2 cut(s) 676, 903
BfuI GTATCC 1 cut(s) 855
BisI GCNGC 2 cut(s) 340, 625
BlpI GCTNAGC 1 cut(s) 39
BlsI GCNGC 2 cut(s) 341, 626
Bme1390I CCNGG 1 cut(s) 798
Bme18I GGWCC 1 cut(s) 995
BmeT110I CYCGRG 1 cut(s) 1181
BmgBI CACGTC 1 cut(s) 727
BmgT120I GGNCC 1 cut(s) 995
BmiI GGNNCC 2 cut(s) 448, 959
BmrFI CCNGG 1 cut(s) 798
BmsI GCATC 2 cut(s) 40, 636
BpiI GAAGAC 1 cut(s) 169
BpmI CTGGAG 1 cut(s) 253
Bpu10I CCTNAGC 1 cut(s) 527
Bpu1102I GCTNAGC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 672
BsaBI GATNNNNATC 1 cut(s) 843
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 6 cut(s) 107, 260, 796, 991, 1001, 1150
Bsc4I CCNNNNNNNGG 3 cut(s) 322, 323, 755
Bse118I RCCGGY 2 cut(s) 452, 1105
Bse1I ACTGG 1 cut(s) 245
Bse3DI GCAATG 1 cut(s) 552
Bse8I GATNNNNATC 1 cut(s) 843
BseBI CCWGG 1 cut(s) 798
BseDI CCNNGG 6 cut(s) 107, 260, 796, 991, 1001, 1150
BseJI GATNNNNATC 1 cut(s) 843
BseLI CCNNNNNNNGG 3 cut(s) 322, 323, 755
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 3 cut(s) 30, 341, 518
BseNI ACTGG 1 cut(s) 245
BseXI GCAGC 2 cut(s) 351, 611
BseYI CCCAGC 1 cut(s) 85
Bsh1236I CGCG 2 cut(s) 337, 584
BshFI GGCC 2 cut(s) 188, 411
BsiHKAI GWGCWC 1 cut(s) 200
BsiHKCI CYCGRG 1 cut(s) 1181
BsiSI CCGG 2 cut(s) 453, 1106
BslFI GGGAC 2 cut(s) 725, 737
BslI CCNNNNNNNGG 3 cut(s) 322, 323, 755
BsmAI GTCTC 2 cut(s) 152, 821
BsmFI GGGAC 2 cut(s) 725, 737
BsmI GAATGC 2 cut(s) 116, 118
BsnI GGCC 2 cut(s) 188, 411
Bso31I GGTCTC 1 cut(s) 152
BsoBI CYCGRG 1 cut(s) 1181
Bsp1286I GDGCHC 1 cut(s) 200
Bsp1407I TGTACA 1 cut(s) 867
Bsp143I GATC 2 cut(s) 446, 858
Bsp1720I GCTNAGC 1 cut(s) 39
Bsp19I CCATGG 2 cut(s) 991, 1001
BspACI CCGC 4 cut(s) 126, 357, 450, 1170
BspANI GGCC 2 cut(s) 188, 411
BspCNI CTCAG 3 cut(s) 31, 342, 519
BspFNI CGCG 2 cut(s) 337, 584
BspHI TCATGA 1 cut(s) 1080
BspLI GGNNCC 2 cut(s) 448, 959
BspMAI CTGCAG 2 cut(s) 680, 907
BspPI GGATC 2 cut(s) 441, 454
BspQI GCTCTTC 1 cut(s) 205
BspTNI GGTCTC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 552
BsrFI RCCGGY 2 cut(s) 452, 1105
BsrGI TGTACA 1 cut(s) 867
BsrI ACTGG 1 cut(s) 245
BssAI RCCGGY 2 cut(s) 452, 1105
BssECI CCNNGG 6 cut(s) 107, 260, 796, 991, 1001, 1150
BssMI GATC 2 cut(s) 446, 858
BssNAI GTATAC 1 cut(s) 774
BssSI CACGAG 1 cut(s) 218
BssT1I CCWWGG 4 cut(s) 107, 991, 1001, 1150
Bst1107I GTATAC 1 cut(s) 774
Bst2BI CACGAG 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 798
Bst4CI ACNGT 4 cut(s) 661, 778, 865, 1102
Bst6I CTCTTC 1 cut(s) 205
BstAPI GCANNNNNTGC 1 cut(s) 497
BstAUI TGTACA 1 cut(s) 867
BstDEI CTNAG 3 cut(s) 39, 350, 527
BstDSI CCRYGG 2 cut(s) 991, 1001
BstFNI CGCG 2 cut(s) 337, 584
BstHHI GCGC 4 cut(s) 339, 349, 584, 707
BstKTI GATC 2 cut(s) 449, 861
BstMAI GTCTC 2 cut(s) 152, 821
BstMBI GATC 2 cut(s) 446, 858
BstMWI GCNNNNNNNGC 5 cut(s) 214, 488, 497, 941, 1167
BstNI CCWGG 1 cut(s) 798
BstNSI RCATGY 3 cut(s) 167, 478, 735
BstSCI CCNGG 1 cut(s) 796
BstSFI CTRYAG 2 cut(s) 676, 903
BstUI CGCG 2 cut(s) 337, 584
BstV1I GCAGC 2 cut(s) 351, 611
BstV2I GAAGAC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 446
BstXI CCANNNNNNTGG 1 cut(s) 720
BstYI RGATCY 1 cut(s) 446
BstZ17I GTATAC 1 cut(s) 774
BsuI GTATCC 1 cut(s) 855
BsuRI GGCC 2 cut(s) 188, 411
BtgI CCRYGG 2 cut(s) 991, 1001
BtrI CACGTC 1 cut(s) 727
BtsI GCAGTG 2 cut(s) 673, 978
BtsIMutI CAGTG 4 cut(s) 673, 783, 870, 978
CaiI CAGNNNCTG 1 cut(s) 497
CciI TCATGA 1 cut(s) 1080
CfoI GCGC 4 cut(s) 339, 349, 584, 707
Cfr10I RCCGGY 2 cut(s) 452, 1105
Cfr13I GGNCC 1 cut(s) 995
Csp6I GTAC 2 cut(s) 592, 868
CviAII CATG 7 cut(s) 164, 475, 732, 745, 992, 1002, 1081
CviQI GTAC 2 cut(s) 592, 868
DdeI CTNAG 3 cut(s) 39, 350, 527
DpnI GATC 2 cut(s) 448, 860
DpnII GATC 2 cut(s) 446, 858
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
EciI GGCGGA 1 cut(s) 439
Ecl136II GAGCTC 1 cut(s) 198
Eco130I CCWWGG 4 cut(s) 107, 991, 1001, 1150
Eco24I GRGCYC 1 cut(s) 200
Eco31I GGTCTC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 995
Eco53kI GAGCTC 1 cut(s) 198
Eco57I CTGAAG 2 cut(s) 35, 489
Eco88I CYCGRG 1 cut(s) 1181
EcoICRI GAGCTC 1 cut(s) 198
EcoRI GAATTC 1 cut(s) 586
EcoRII CCWGG 1 cut(s) 796
EcoT14I CCWWGG 4 cut(s) 107, 991, 1001, 1150
EcoT22I ATGCAT 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 200
ErhI CCWWGG 4 cut(s) 107, 991, 1001, 1150
FaeI CATG 7 cut(s) 167, 478, 735, 748, 995, 1005, 1084
FalI AAGNNNNNCTT 4 cut(s) 37, 69, 534, 566
FaqI GGGAC 2 cut(s) 725, 737
FatI CATG 7 cut(s) 163, 474, 731, 744, 991, 1001, 1080
FauI CCCGC 1 cut(s) 350
FbaI TGATCA 1 cut(s) 858
FblI GTMKAC 1 cut(s) 773
Fnu4HI GCNGC 2 cut(s) 340, 625
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 2 cut(s) 340, 625
FspBI CTAG 1 cut(s) 413
FspI TGCGCA 1 cut(s) 706
GlaI GCGC 4 cut(s) 338, 348, 583, 706
GluI GCNGC 2 cut(s) 340, 625
GsaI CCCAGC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 253
HaeIII GGCC 2 cut(s) 188, 411
HapII CCGG 2 cut(s) 453, 1106
HhaI GCGC 4 cut(s) 339, 349, 584, 707
Hin1II CATG 7 cut(s) 167, 478, 735, 748, 995, 1005, 1084
Hin6I GCGC 4 cut(s) 337, 347, 582, 705
HinP1I GCGC 4 cut(s) 337, 347, 582, 705
HindIII AAGCTT 2 cut(s) 436, 827
HinfI GANTC 3 cut(s) 256, 781, 821
HpaII CCGG 2 cut(s) 453, 1106
Hpy166II GTNNAC 3 cut(s) 11, 774, 868
Hpy188I TCNGA 5 cut(s) 156, 465, 1068, 1095, 1114
Hpy188III TCNNGA 6 cut(s) 220, 689, 818, 836, 1081, 1192
Hpy8I GTNNAC 3 cut(s) 11, 774, 868
HpyAV CCTTC 2 cut(s) 10, 166
HpyCH4III ACNGT 4 cut(s) 661, 778, 865, 1102
HpyCH4IV ACGT 3 cut(s) 69, 726, 770
HpyF10VI GCNNNNNNNGC 5 cut(s) 214, 488, 497, 941, 1167
HpyF3I CTNAG 3 cut(s) 39, 350, 527
HpySE526I ACGT 3 cut(s) 69, 726, 770
Hsp92II CATG 7 cut(s) 167, 478, 735, 748, 995, 1005, 1084
HspAI GCGC 4 cut(s) 337, 347, 582, 705
KroI GCCGGC 1 cut(s) 452
KroNI GCCGGC 1 cut(s) 454
Ksp22I TGATCA 1 cut(s) 858
Kzo9I GATC 2 cut(s) 446, 858
LguI GCTCTTC 1 cut(s) 205
LmnI GCTCC 2 cut(s) 89, 963
Lsp1109I GCAGC 2 cut(s) 351, 611
LweI GCATC 2 cut(s) 40, 636
MaeI CTAG 1 cut(s) 413
MaeII ACGT 3 cut(s) 69, 726, 770
MaeIII GTNAC 4 cut(s) 236, 388, 766, 778
MalI GATC 2 cut(s) 448, 860
MboI GATC 2 cut(s) 446, 858
MboII GAAGA 7 cut(s) 169, 192, 262, 495, 824, 905, 967
MfeI CAATTG 1 cut(s) 1131
MflI RGATCY 1 cut(s) 446
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 5 cut(s) 318, 516, 586, 716, 1131
MlyI GAGTC 2 cut(s) 265, 775
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 7 cut(s) 137, 270, 425, 522, 626, 998, 1008
Mph1103I ATGCAT 1 cut(s) 118
MroNI GCCGGC 1 cut(s) 452
MroXI GAANNNNTTC 3 cut(s) 116, 176, 499
MseI TTAA 2 cut(s) 305, 927
MspI CCGG 2 cut(s) 453, 1106
MspR9I CCNGG 1 cut(s) 798
MunI CAATTG 1 cut(s) 1131
Mva1269I GAATGC 2 cut(s) 116, 118
MvaI CCWGG 1 cut(s) 798
MvnI CGCG 2 cut(s) 337, 584
MwoI GCNNNNNNNGC 5 cut(s) 214, 488, 497, 941, 1167
NaeI GCCGGC 1 cut(s) 454
NcoI CCATGG 2 cut(s) 991, 1001
NdeII GATC 2 cut(s) 446, 858
NgoMIV GCCGGC 1 cut(s) 452
NlaIII CATG 7 cut(s) 167, 478, 735, 748, 995, 1005, 1084
NlaIV GGNNCC 2 cut(s) 448, 959
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 778
NsbI TGCGCA 1 cut(s) 706
NsiI ATGCAT 1 cut(s) 118
NspI RCATGY 3 cut(s) 167, 478, 735
PagI TCATGA 1 cut(s) 1080
PciSI GCTCTTC 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PctI GAATGC 2 cut(s) 116, 118
PdiI GCCGGC 1 cut(s) 454
PdmI GAANNNNTTC 3 cut(s) 116, 176, 499
PfeI GAWTC 1 cut(s) 821
PflFI GACNNNGTC 1 cut(s) 784
PflMI CCANNNNNTGG 1 cut(s) 755
PkrI GCNGC 2 cut(s) 341, 626
PleI GAGTC 2 cut(s) 264, 775
PpsI GAGTC 2 cut(s) 264, 775
Psp124BI GAGCTC 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 796
PspFI CCCAGC 1 cut(s) 85
PspGI CCWGG 1 cut(s) 796
PspN4I GGNNCC 2 cut(s) 448, 959
PspPI GGNCC 1 cut(s) 995
PstI CTGCAG 2 cut(s) 680, 907
PstNI CAGNNNCTG 1 cut(s) 497
PsuI RGATCY 1 cut(s) 446
PsyI GACNNNGTC 1 cut(s) 784
RsaI GTAC 2 cut(s) 593, 869
RsaNI GTAC 2 cut(s) 592, 868
SacI GAGCTC 1 cut(s) 200
SapI GCTCTTC 1 cut(s) 205
SaqAI TTAA 2 cut(s) 305, 927
SatI GCNGC 2 cut(s) 340, 625
Sau3AI GATC 2 cut(s) 446, 858
Sau96I GGNCC 1 cut(s) 995
SchI GAGTC 2 cut(s) 265, 775
ScrFI CCNGG 1 cut(s) 798
SduI GDGCHC 1 cut(s) 200
SfaNI GCATC 2 cut(s) 40, 636
SfcI CTRYAG 2 cut(s) 676, 903
SinI GGWCC 1 cut(s) 995
SmlI CTYRAG 1 cut(s) 687
SmoI CTYRAG 1 cut(s) 687
Sse9I AATT 5 cut(s) 318, 516, 586, 716, 1131
SsiI CCGC 4 cut(s) 126, 357, 450, 1170
SspMI CTAG 1 cut(s) 413
SstI GAGCTC 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 796
StyI CCWWGG 4 cut(s) 107, 991, 1001, 1150
TaaI ACNGT 4 cut(s) 661, 778, 865, 1102
TaiI ACGT 3 cut(s) 72, 729, 773
TaqI TCGA 2 cut(s) 788, 819
TasI AATT 5 cut(s) 318, 516, 586, 716, 1131
TatI WGTACW 1 cut(s) 867
TfiI GAWTC 1 cut(s) 821
Tru1I TTAA 2 cut(s) 305, 927
Tru9I TTAA 2 cut(s) 305, 927
TscAI CASTG 4 cut(s) 680, 783, 870, 985
TseFI GTSAC 1 cut(s) 778
TseI GCWGC 2 cut(s) 339, 624
Tsp45I GTSAC 1 cut(s) 778
TspDTI ATGAA 3 cut(s) 65, 109, 586
TspRI CASTG 4 cut(s) 680, 783, 870, 985
Tth111I GACNNNGTC 1 cut(s) 784
Van91I CCANNNNNTGG 1 cut(s) 755
VpaK11BI GGWCC 1 cut(s) 995
XapI RAATTY 2 cut(s) 586, 716
XceI RCATGY 3 cut(s) 167, 478, 735
XcmI CCANNNNNNNNNTGG 1 cut(s) 324
XmiI GTMKAC 1 cut(s) 773
XmnI GAANNNNTTC 3 cut(s) 116, 176, 499
XspI CTAG 1 cut(s) 413
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.