Rw2G002890

Equilibrative nucleotide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0013473
Physical Location & Seq
Forward (+)
2681318 .. 2682706
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G002890.1

Sequence Viewer

Length: 1188 bp
ATGGAAAGTGGAGTAAAAGGTCTAGAATTCAAAGATGAGCCGAGAGATGCTTACAAGGTTGCTTACGTTATTCACTTCTTGCTCGGAGCTGGCAATTTGCTTCCTTGGAATGCATTCATCACTGCTGTTGATTACTTTGGCCATCTCTATCCAACCAAGCATGTCGAGAAGGTCTTCTCCGTAGCTTACATGAGTTCTTCAGTGCTAGTTCTGGTTGTAATGATGACTTGGGGTTGCTGGTGGGAGAAAATGAGCCCTAGGCTCAGACTCAACTTGGGTTTTTTGATGTTTATTCTCTCGTTAACCGTGGCTCCTATCACAGATTGGGCTAGTTATCTCAGTACTAATGCAGCTTATGGTGTAACAGTTGCATCAGTTGTAATATGTGGCTTAGCTGATGGCTTGGTAGGTGGAAGCTTAATGGGATCAGCTGGAAAGCTTCCCAAAAAGTATATGCAGGCTGTTTTTGCTGGCACTGCTTCTTCAGGTGTTATAATTTGTGTCCTGAGAATTTCAACAAAGGCAATGGTTCCACAGACCCCAAAAGGACTTAAAACAAGTGCCCACTTGTATTTTATTGTCAGCATCATTATACTCCTATGCTGCATCCTTTGTTCCAACTTGCTATACAAGCTGAGAGTCATGCAGGAACACTGCAAACTTGTTCAAGATCAATCCTTTTGCTGCTCATCAAGGCCGAAATTTTGGGCTGTGGCGCAAAAAGTTCCCGGGCCAGCTTTTGGGATCTTCTTAATCTATACAGTGACTCTGTCAATCTTTCCAGGATTTATAGCTGAAAATTTGGAATCCAAGCTTCTTCAAGATTGGTATCCCATTTTGCTTATCACAGTGTACAACTTTGCGGATTTAGTAGGTAAATTTTTGACTGCAGTGTACCTTCTGAAGAGTATCAAAAAGGCAACATGGGCTTGTGTTACCAGACTCTTATTCTATCCAATCTTCACTGCTTGCCTCCATGGACCAACATGGCTGAAAACTGAAGTTCCTATGATCTTCCTCACATTTATGCTTGGAATGTCCAATGGTTACCTCACAAGTGTCATCATGATGACAGTACCAAAACTAGTACCAGTTCCAGAAGCAGAACTATCTGCAATTGTAATGGTTGTGTTCCTTGGAGTCGGGTTGGTTAGTGGTTCGGTTCTAGGCTGGTTCTGGATTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleoside_tran

Protein Analysis

395

Amino Acids

43.65

Weight (kDa)

9.07

Isoelectric Point (pI)

28.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoside_tran PF01733 124 - 221 2.5e-21 Nucleoside transporter
Nucleoside_tran PF01733 234 - 393 2.5e-36 Nucleoside transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02630 AT1G02630
fragaria_vesca FvH4_1g03060
malus_domestica MD02G1029900.v1.1 MD15G1171300.v1.1
prunus_persica Prupe.7G245000_v2.0.a1
pyrus_communis pycom02g02490 pycom15g15290
rosa_chinensis RchiOBHm_Chr2g0088191
rosa_laevigata RLG00000015930
rosa_multiflora Rmu_sc0003275.1_g000069
rosa_roxburghii Rroxscaffold_2G00152840
rosa_rugosa Rorug01G0481700
rosa_samantha Rh2AG036700 Rh2BG035900 Rh2CG037000 Rh2DG036400
rosa_wichuraiana Rw2G002890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 494
AccB7I CCANNNNNTGG 1 cut(s) 740
AciI CCGC 1 cut(s) 863
AclWI GGATC 2 cut(s) 433, 752
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 5 cut(s) 26, 510, 701, 799, 878
AcuI CTGAAG 4 cut(s) 183, 468, 923, 1020
AfaI GTAC 5 cut(s) 343, 854, 896, 1077, 1089
AfiI CCNNNNNNNGG 1 cut(s) 740
AgsI TTSAA 4 cut(s) 31, 516, 668, 821
AhlI ACTAGT 1 cut(s) 1084
AjnI CCWGG 1 cut(s) 781
AlwI GGATC 2 cut(s) 433, 752
Ama87I CYCGRG 1 cut(s) 728
AoxI GGCC 3 cut(s) 139, 695, 731
ApeKI GCWGC 3 cut(s) 350, 603, 684
ApoI RAATTY 5 cut(s) 26, 510, 701, 799, 878
Asp700I GAANNNNTTC 2 cut(s) 113, 173
AspA2I CCTAGG 1 cut(s) 257
AspLEI GCGC 1 cut(s) 718
AspS9I GGNCC 2 cut(s) 731, 980
AsuC2I CCSGG 2 cut(s) 729, 730
AvaI CYCGRG 1 cut(s) 728
AvaII GGWCC 1 cut(s) 980
AvrII CCTAGG 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 565
BalI TGGCCA 1 cut(s) 141
BanII GRGCYC 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 166
BbvI GCAGC 3 cut(s) 362, 590, 671
BccI CCATC 2 cut(s) 150, 392
BciT130I CCWGG 1 cut(s) 783
BciVI GTATCC 1 cut(s) 840
BcnI CCSGG 2 cut(s) 729, 730
BcuI ACTAGT 1 cut(s) 1084
BfaI CTAG 6 cut(s) 23, 206, 258, 330, 1085, 1166
BfmI CTRYAG 1 cut(s) 888
BfuI GTATCC 1 cut(s) 840
BisI GCNGC 3 cut(s) 351, 604, 685
BlnI CCTAGG 1 cut(s) 257
BlpI GCTNAGC 1 cut(s) 391
BlsI GCNGC 3 cut(s) 352, 605, 686
BmcAI AGTACT 1 cut(s) 343
Bme1390I CCNGG 3 cut(s) 729, 730, 783
Bme18I GGWCC 1 cut(s) 980
BmeT110I CYCGRG 1 cut(s) 728
BmgT120I GGNCC 2 cut(s) 731, 980
BmiI GGNNCC 2 cut(s) 312, 531
BmrFI CCNGG 3 cut(s) 729, 730, 783
BmsI GCATC 4 cut(s) 37, 380, 594, 615
BpiI GAAGAC 1 cut(s) 166
Bpu1102I GCTNAGC 1 cut(s) 391
BpuMI CCSGG 2 cut(s) 729, 730
BsaBI GATNNNNATC 1 cut(s) 828
BsaJI CCNNGG 6 cut(s) 104, 257, 306, 728, 976, 1135
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bsc4I CCNNNNNNNGG 1 cut(s) 740
Bse1I ACTGG 1 cut(s) 1091
Bse3DI GCAATG 1 cut(s) 531
Bse8I GATNNNNATC 1 cut(s) 828
BseBI CCWGG 1 cut(s) 783
BseDI CCNNGG 6 cut(s) 104, 257, 306, 728, 976, 1135
BseGI GGATG 1 cut(s) 606
BseJI GATNNNNATC 1 cut(s) 828
BseLI CCNNNNNNNGG 1 cut(s) 740
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 4 cut(s) 277, 352, 497, 626
BseNI ACTGG 1 cut(s) 1091
BseSI GKGCMC 1 cut(s) 565
BseXI GCAGC 3 cut(s) 362, 590, 671
BshFI GGCC 3 cut(s) 141, 697, 733
BsiHKCI CYCGRG 1 cut(s) 728
BsiSI CCGG 1 cut(s) 729
BslI CCNNNNNNNGG 1 cut(s) 740
BsmI GAATGC 2 cut(s) 113, 115
BsnI GGCC 3 cut(s) 141, 697, 733
BsoBI CYCGRG 1 cut(s) 728
Bsp1286I GDGCHC 2 cut(s) 257, 565
Bsp1407I TGTACA 1 cut(s) 852
Bsp143I GATC 4 cut(s) 425, 670, 744, 1011
Bsp1720I GCTNAGC 1 cut(s) 391
Bsp19I CCATGG 1 cut(s) 976
BspACI CCGC 1 cut(s) 863
BspANI GGCC 3 cut(s) 141, 697, 733
BspCNI CTCAG 4 cut(s) 276, 351, 498, 627
BspHI TCATGA 1 cut(s) 1065
BspLI GGNNCC 2 cut(s) 312, 531
BspMAI CTGCAG 1 cut(s) 892
BspPI GGATC 2 cut(s) 433, 752
BsrDI GCAATG 1 cut(s) 531
BsrGI TGTACA 1 cut(s) 852
BsrI ACTGG 1 cut(s) 1091
BssECI CCNNGG 6 cut(s) 104, 257, 306, 728, 976, 1135
BssMI GATC 4 cut(s) 425, 670, 744, 1011
BssT1I CCWWGG 4 cut(s) 104, 257, 976, 1135
Bst2UI CCWGG 1 cut(s) 783
Bst4CI ACNGT 5 cut(s) 307, 367, 763, 850, 1075
Bst6I CTCTTC 1 cut(s) 899
BstAUI TGTACA 1 cut(s) 852
BstC8I GCNNGC 5 cut(s) 91, 459, 472, 735, 970
BstDEI CTNAG 5 cut(s) 263, 338, 391, 506, 635
BstDSI CCRYGG 2 cut(s) 306, 976
BstEII GGTNACC 1 cut(s) 1046
BstF5I GGATG 1 cut(s) 606
BstHHI GCGC 1 cut(s) 718
BstKTI GATC 4 cut(s) 428, 673, 747, 1014
BstMBI GATC 4 cut(s) 425, 670, 744, 1011
BstMWI GCNNNNNNNGC 4 cut(s) 467, 476, 631, 926
BstNI CCWGG 1 cut(s) 783
BstNSI RCATGY 1 cut(s) 164
BstPI GGTNACC 1 cut(s) 1046
BstSCI CCNGG 3 cut(s) 727, 728, 781
BstSFI CTRYAG 1 cut(s) 888
BstSLI GKGCMC 1 cut(s) 565
BstV1I GCAGC 3 cut(s) 362, 590, 671
BstV2I GAAGAC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 744
BstYI RGATCY 1 cut(s) 744
BsuI GTATCC 1 cut(s) 840
BsuRI GGCC 3 cut(s) 141, 697, 733
BtgI CCRYGG 2 cut(s) 306, 976
BtsCI GGATG 1 cut(s) 606
BtsI GCAGTG 5 cut(s) 120, 474, 652, 897, 963
BtsIMutI CAGTG 8 cut(s) 120, 207, 474, 652, 768, 855, 897, 963
Cac8I GCNNGC 5 cut(s) 91, 459, 472, 735, 970
CciI TCATGA 1 cut(s) 1065
CfoI GCGC 1 cut(s) 718
Cfr13I GGNCC 2 cut(s) 731, 980
Cfr9I CCCGGG 1 cut(s) 728
Csp6I GTAC 5 cut(s) 342, 853, 895, 1076, 1088
CviAII CATG 7 cut(s) 161, 190, 643, 924, 977, 987, 1066
CviQI GTAC 5 cut(s) 342, 853, 895, 1076, 1088
DdeI CTNAG 5 cut(s) 263, 338, 391, 506, 635
DpnI GATC 4 cut(s) 427, 672, 746, 1013
DpnII GATC 4 cut(s) 425, 670, 744, 1011
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 899
EarI CTCTTC 1 cut(s) 899
Eco130I CCWWGG 4 cut(s) 104, 257, 976, 1135
Eco24I GRGCYC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 980
Eco57I CTGAAG 4 cut(s) 183, 468, 923, 1020
Eco88I CYCGRG 1 cut(s) 728
Eco91I GGTNACC 1 cut(s) 1046
EcoO65I GGTNACC 1 cut(s) 1046
EcoRI GAATTC 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 781
EcoT14I CCWWGG 4 cut(s) 104, 257, 976, 1135
EcoT22I ATGCAT 1 cut(s) 115
EcoT38I GRGCYC 1 cut(s) 257
ErhI CCWWGG 4 cut(s) 104, 257, 976, 1135
FaeI CATG 7 cut(s) 164, 193, 646, 927, 980, 990, 1069
FatI CATG 7 cut(s) 160, 189, 642, 923, 976, 986, 1065
Fnu4HI GCNGC 3 cut(s) 351, 604, 685
FokI GGATG 1 cut(s) 593
FriOI GRGCYC 1 cut(s) 257
Fsp4HI GCNGC 3 cut(s) 351, 604, 685
FspBI CTAG 6 cut(s) 23, 206, 258, 330, 1085, 1166
GlaI GCGC 1 cut(s) 717
GluI GCNGC 3 cut(s) 351, 604, 685
HaeIII GGCC 3 cut(s) 141, 697, 733
HapII CCGG 1 cut(s) 729
HhaI GCGC 1 cut(s) 718
Hin1II CATG 7 cut(s) 164, 193, 646, 927, 980, 990, 1069
Hin6I GCGC 1 cut(s) 716
HinP1I GCGC 1 cut(s) 716
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HindIII AAGCTT 3 cut(s) 415, 437, 812
HinfI GANTC 6 cut(s) 267, 639, 766, 806, 942, 1140
HpaI GTTAAC 1 cut(s) 303
HpaII CCGG 1 cut(s) 729
Hpy166II GTNNAC 3 cut(s) 303, 853, 895
Hpy188I TCNGA 3 cut(s) 86, 266, 903
Hpy188III TCNNGA 8 cut(s) 23, 166, 505, 668, 821, 1066, 1097, 1177
Hpy8I GTNNAC 3 cut(s) 303, 853, 895
HpyAV CCTTC 2 cut(s) 163, 908
HpyCH4III ACNGT 5 cut(s) 307, 367, 763, 850, 1075
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 9 cut(s) 113, 350, 371, 457, 606, 646, 657, 890, 1115
HpyF10VI GCNNNNNNNGC 4 cut(s) 467, 476, 631, 926
HpyF3I CTNAG 5 cut(s) 263, 338, 391, 506, 635
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 7 cut(s) 164, 193, 646, 927, 980, 990, 1069
HspAI GCGC 1 cut(s) 716
KspAI GTTAAC 1 cut(s) 303
Kzo9I GATC 4 cut(s) 425, 670, 744, 1011
LmnI GCTCC 2 cut(s) 86, 316
Lsp1109I GCAGC 3 cut(s) 362, 590, 671
LweI GCATC 4 cut(s) 37, 380, 594, 615
MaeI CTAG 6 cut(s) 23, 206, 258, 330, 1085, 1166
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 4 cut(s) 361, 763, 934, 1046
MalI GATC 4 cut(s) 427, 672, 746, 1013
MboI GATC 4 cut(s) 425, 670, 744, 1011
MboII GAAGA 8 cut(s) 166, 189, 474, 739, 809, 916, 952, 1006
MfeI CAATTG 1 cut(s) 1116
MflI RGATCY 1 cut(s) 744
MhlI GDGCHC 2 cut(s) 257, 565
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 8 cut(s) 26, 94, 495, 510, 701, 799, 878, 1116
MluNI TGGCCA 1 cut(s) 141
MlyI GAGTC 5 cut(s) 261, 648, 760, 936, 1149
MmeI TCCRAC 2 cut(s) 176, 642
MnlI CCTC 3 cut(s) 983, 1028, 1061
Mox20I TGGCCA 1 cut(s) 141
Mph1103I ATGCAT 1 cut(s) 115
MroXI GAANNNNTTC 2 cut(s) 113, 173
MscI TGGCCA 1 cut(s) 141
MseI TTAA 4 cut(s) 302, 419, 552, 752
MslI CAYNNNNRTG 2 cut(s) 1025, 1067
Msp20I TGGCCA 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 431
MspI CCGG 1 cut(s) 729
MspR9I CCNGG 3 cut(s) 729, 730, 783
MunI CAATTG 1 cut(s) 1116
Mva1269I GAATGC 2 cut(s) 113, 115
MvaI CCWGG 1 cut(s) 783
MwoI GCNNNNNNNGC 4 cut(s) 467, 476, 631, 926
NciI CCSGG 2 cut(s) 729, 730
NcoI CCATGG 1 cut(s) 976
NdeII GATC 4 cut(s) 425, 670, 744, 1011
NlaIII CATG 7 cut(s) 164, 193, 646, 927, 980, 990, 1069
NlaIV GGNNCC 2 cut(s) 312, 531
NmeAIII GCCGAG 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 763
NsiI ATGCAT 1 cut(s) 115
NspI RCATGY 1 cut(s) 164
PagI TCATGA 1 cut(s) 1065
PctI GAATGC 2 cut(s) 113, 115
PdmI GAANNNNTTC 2 cut(s) 113, 173
PfeI GAWTC 1 cut(s) 806
PflFI GACNNNGTC 1 cut(s) 769
PflMI CCANNNNNTGG 1 cut(s) 740
PfoI TCCNGGA 1 cut(s) 781
PkrI GCNGC 3 cut(s) 352, 605, 686
PleI GAGTC 5 cut(s) 261, 647, 760, 936, 1148
PpsI GAGTC 5 cut(s) 261, 647, 760, 936, 1148
PsiI TTATAA 1 cut(s) 494
Psp6I CCWGG 1 cut(s) 781
PspEI GGTNACC 1 cut(s) 1046
PspGI CCWGG 1 cut(s) 781
PspN4I GGNNCC 2 cut(s) 312, 531
PspPI GGNCC 2 cut(s) 731, 980
PstI CTGCAG 1 cut(s) 892
PsuI RGATCY 1 cut(s) 744
PsyI GACNNNGTC 1 cut(s) 769
PvuII CAGCTG 1 cut(s) 431
RsaI GTAC 5 cut(s) 343, 854, 896, 1077, 1089
RsaNI GTAC 5 cut(s) 342, 853, 895, 1076, 1088
RseI CAYNNNNRTG 2 cut(s) 1025, 1067
SaqAI TTAA 4 cut(s) 302, 419, 552, 752
SatI GCNGC 3 cut(s) 351, 604, 685
Sau3AI GATC 4 cut(s) 425, 670, 744, 1011
Sau96I GGNCC 2 cut(s) 731, 980
ScaI AGTACT 1 cut(s) 343
SchI GAGTC 5 cut(s) 261, 648, 760, 936, 1149
ScrFI CCNGG 3 cut(s) 729, 730, 783
SduI GDGCHC 2 cut(s) 257, 565
SfaNI GCATC 4 cut(s) 37, 380, 594, 615
SfcI CTRYAG 1 cut(s) 888
SinI GGWCC 1 cut(s) 980
SmaI CCCGGG 1 cut(s) 730
SmiMI CAYNNNNRTG 2 cut(s) 1025, 1067
SpeI ACTAGT 1 cut(s) 1084
Sse9I AATT 8 cut(s) 26, 94, 495, 510, 701, 799, 878, 1116
SsiI CCGC 1 cut(s) 863
SspMI CTAG 6 cut(s) 23, 206, 258, 330, 1085, 1166
StyD4I CCNGG 3 cut(s) 727, 728, 781
StyI CCWWGG 4 cut(s) 104, 257, 976, 1135
TaaI ACNGT 5 cut(s) 307, 367, 763, 850, 1075
TaiI ACGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 165
TasI AATT 8 cut(s) 26, 94, 495, 510, 701, 799, 878, 1116
TatI WGTACW 2 cut(s) 341, 852
TfiI GAWTC 1 cut(s) 806
Tru1I TTAA 4 cut(s) 302, 419, 552, 752
Tru9I TTAA 4 cut(s) 302, 419, 552, 752
TscAI CASTG 8 cut(s) 127, 207, 481, 659, 768, 855, 897, 970
TseFI GTSAC 1 cut(s) 763
TseI GCWGC 3 cut(s) 350, 603, 684
Tsp45I GTSAC 1 cut(s) 763
TspDTI ATGAA 1 cut(s) 106
TspGWI ACGGA 1 cut(s) 169
TspMI CCCGGG 1 cut(s) 728
TspRI CASTG 8 cut(s) 127, 207, 481, 659, 768, 855, 897, 970
Tth111I GACNNNGTC 1 cut(s) 769
Van91I CCANNNNNTGG 1 cut(s) 740
VpaK11BI GGWCC 1 cut(s) 980
XapI RAATTY 5 cut(s) 26, 510, 701, 799, 878
XbaI TCTAGA 1 cut(s) 22
XceI RCATGY 1 cut(s) 164
XmaI CCCGGG 1 cut(s) 728
XmaJI CCTAGG 1 cut(s) 257
XmnI GAANNNNTTC 2 cut(s) 113, 173
XspI CTAG 6 cut(s) 23, 206, 258, 330, 1085, 1166
ZrmI AGTACT 1 cut(s) 343
Zsp2I ATGCAT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.