phosphatidylinositol phosphatidylcholine transfer protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 87 - 129 | 4.9e-10 | PPR repeat family |
| PPR_2 | PF13041 | 188 - 231 | 2.6e-07 | PPR repeat family |
| TPR_24 | PF23276 | 236 - 336 | 3.3e-08 | Fungal tetratrico peptide repeats |
| PPR_long | PF17177 | 241 - 377 | 1e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 246 - 302 | 2e-09 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 261 - 302 | 1.7e-10 | PPR repeat family |
| PPR | PF01535 | 261 - 290 | 6.5e-06 | PPR repeat |
| PPR_1 | PF12854 | 289 - 321 | 8.6e-10 | PPR repeat |
| PPR_2 | PF13041 | 292 - 336 | 8e-11 | PPR repeat family |
| PPR | PF01535 | 295 - 325 | 1.6e-08 | PPR repeat |
| TPR_24 | PF23276 | 336 - 459 | 1.1e-07 | Fungal tetratrico peptide repeats |
| TPR_24 | PF23276 | 374 - 494 | 3e-07 | Fungal tetratrico peptide repeats |
| PPR_3 | PF13812 | 390 - 445 | 8.8e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 432 - 480 | 1.3e-11 | PPR repeat family |
| PPR_3 | PF13812 | 455 - 503 | 5.9e-09 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 467 - 504 | 2.1e-08 | PPR repeat family |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1253 |
| AccI | GTMKAC | 1 cut(s) | 1345 |
| AciI | CCGC | 1 cut(s) | 649 |
| AclWI | GGATC | 1 cut(s) | 977 |
| AcsI | RAATTY | 3 cut(s) | 167, 243, 1136 |
| AcuI | CTGAAG | 2 cut(s) | 21, 1250 |
| AfaI | GTAC | 3 cut(s) | 553, 680, 1263 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 155, 233, 1429, 1509 |
| AgsI | TTSAA | 4 cut(s) | 172, 496, 944, 1553 |
| AluBI | AGCT | 8 cut(s) | 60, 121, 182, 335, 466, 669, 1270, 1280 |
| AluI | AGCT | 8 cut(s) | 60, 121, 182, 335, 466, 669, 1270, 1280 |
| Alw21I | GWGCWC | 1 cut(s) | 671 |
| Alw26I | GTCTC | 2 cut(s) | 77, 101 |
| AlwI | GGATC | 1 cut(s) | 977 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 209 |
| AoxI | GGCC | 4 cut(s) | 306, 452, 872, 936 |
| ApeKI | GCWGC | 2 cut(s) | 121, 1103 |
| ApoI | RAATTY | 3 cut(s) | 167, 243, 1136 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 877, 909 |
| AseI | ATTAAT | 2 cut(s) | 636, 1323 |
| AspS9I | GGNCC | 3 cut(s) | 937, 1462, 1546 |
| AsuHPI | GGTGA | 2 cut(s) | 554, 1364 |
| AvaII | GGWCC | 2 cut(s) | 1462, 1546 |
| AxyI | CCTNAGG | 1 cut(s) | 52 |
| BanII | GRGCYC | 1 cut(s) | 671 |
| BbsI | GAAGAC | 1 cut(s) | 1055 |
| Bbv12I | GWGCWC | 1 cut(s) | 671 |
| BbvCI | CCTCAGC | 1 cut(s) | 1281 |
| BbvI | GCAGC | 2 cut(s) | 108, 1090 |
| BccI | CCATC | 1 cut(s) | 757 |
| BciVI | GTATCC | 1 cut(s) | 613 |
| BcoDI | GTCTC | 2 cut(s) | 77, 101 |
| BfaI | CTAG | 4 cut(s) | 179, 233, 386, 1518 |
| BfuI | GTATCC | 1 cut(s) | 613 |
| BisI | GCNGC | 2 cut(s) | 122, 1104 |
| BlpI | GCTNAGC | 1 cut(s) | 665 |
| BlsI | GCNGC | 2 cut(s) | 123, 1105 |
| BmcAI | AGTACT | 1 cut(s) | 1263 |
| Bme18I | GGWCC | 2 cut(s) | 1462, 1546 |
| BmgT120I | GGNCC | 3 cut(s) | 937, 1462, 1546 |
| BmiI | GGNNCC | 1 cut(s) | 1464 |
| BmsI | GCATC | 3 cut(s) | 370, 948, 1487 |
| BpiI | GAAGAC | 1 cut(s) | 1055 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1281 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 665 |
| BsaJI | CCNNGG | 2 cut(s) | 309, 1072 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1346, 1376 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 155, 233, 1429, 1509 |
| Bse1I | ACTGG | 1 cut(s) | 1197 |
| Bse21I | CCTNAGG | 1 cut(s) | 52 |
| Bse3DI | GCAATG | 1 cut(s) | 735 |
| BseDI | CCNNGG | 2 cut(s) | 309, 1072 |
| BseGI | GGATG | 5 cut(s) | 47, 720, 768, 832, 1502 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 155, 233, 1429, 1509 |
| BseMI | GCAATG | 1 cut(s) | 735 |
| BseMII | CTCAG | 6 cut(s) | 66, 99, 546, 656, 1272, 1458 |
| BseNI | ACTGG | 1 cut(s) | 1197 |
| BseRI | GAGGAG | 1 cut(s) | 758 |
| BseXI | GCAGC | 2 cut(s) | 108, 1090 |
| BseYI | CCCAGC | 3 cut(s) | 149, 605, 1230 |
| BsgI | GTGCAG | 1 cut(s) | 1149 |
| BshFI | GGCC | 4 cut(s) | 308, 454, 874, 938 |
| BsiHKAI | GWGCWC | 1 cut(s) | 671 |
| BslFI | GGGAC | 5 cut(s) | 9, 209, 719, 1105, 1448 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 155, 233, 1429, 1509 |
| BsmAI | GTCTC | 2 cut(s) | 77, 101 |
| BsmFI | GGGAC | 5 cut(s) | 9, 209, 719, 1105, 1448 |
| BsnI | GGCC | 4 cut(s) | 308, 454, 874, 938 |
| Bsp1286I | GDGCHC | 1 cut(s) | 671 |
| Bsp1407I | TGTACA | 1 cut(s) | 678 |
| Bsp143I | GATC | 1 cut(s) | 982 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 665 |
| Bsp19I | CCATGG | 1 cut(s) | 309 |
| BspACI | CCGC | 1 cut(s) | 649 |
| BspANI | GGCC | 4 cut(s) | 308, 454, 874, 938 |
| BspCNI | CTCAG | 6 cut(s) | 65, 100, 547, 657, 1273, 1459 |
| BspLI | GGNNCC | 1 cut(s) | 1464 |
| BspPI | GGATC | 1 cut(s) | 977 |
| BspQI | GCTCTTC | 1 cut(s) | 321 |
| BsrDI | GCAATG | 1 cut(s) | 735 |
| BsrGI | TGTACA | 1 cut(s) | 678 |
| BsrI | ACTGG | 1 cut(s) | 1197 |
| BssECI | CCNNGG | 2 cut(s) | 309, 1072 |
| BssMI | GATC | 1 cut(s) | 982 |
| BssT1I | CCWWGG | 1 cut(s) | 309 |
| Bst4CI | ACNGT | 4 cut(s) | 683, 906, 914, 1255 |
| Bst6I | CTCTTC | 3 cut(s) | 321, 647, 1146 |
| BstAUI | TGTACA | 1 cut(s) | 678 |
| BstC8I | GCNNGC | 1 cut(s) | 126 |
| BstDEI | CTNAG | 8 cut(s) | 52, 108, 482, 555, 665, 1213, 1281, 1467 |
| BstDSI | CCRYGG | 1 cut(s) | 309 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1427 |
| BstF5I | GGATG | 5 cut(s) | 47, 720, 768, 832, 1502 |
| BstKTI | GATC | 1 cut(s) | 985 |
| BstMAI | GTCTC | 2 cut(s) | 77, 101 |
| BstMBI | GATC | 1 cut(s) | 982 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 320, 1172 |
| BstNSI | RCATGY | 3 cut(s) | 128, 299, 1493 |
| BstV1I | GCAGC | 2 cut(s) | 108, 1090 |
| BstV2I | GAAGAC | 1 cut(s) | 1055 |
| Bsu36I | CCTNAGG | 1 cut(s) | 52 |
| BsuI | GTATCC | 1 cut(s) | 613 |
| BsuRI | GGCC | 4 cut(s) | 308, 454, 874, 938 |
| BtgI | CCRYGG | 1 cut(s) | 309 |
| BtsCI | GGATG | 5 cut(s) | 47, 720, 768, 832, 1502 |
| BtsIMutI | CAGTG | 2 cut(s) | 45, 910 |
| Cac8I | GCNNGC | 1 cut(s) | 126 |
| CaiI | CAGNNNCTG | 1 cut(s) | 209 |
| Cfr13I | GGNCC | 3 cut(s) | 937, 1462, 1546 |
| CseI | GACGC | 2 cut(s) | 16, 1154 |
| Csp6I | GTAC | 3 cut(s) | 552, 679, 1262 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1013, 1048 |
| CviAII | CATG | 6 cut(s) | 125, 296, 310, 1273, 1477, 1490 |
| CviQI | GTAC | 3 cut(s) | 552, 679, 1262 |
| DdeI | CTNAG | 8 cut(s) | 52, 108, 482, 555, 665, 1213, 1281, 1467 |
| DpnI | GATC | 1 cut(s) | 984 |
| DpnII | GATC | 1 cut(s) | 982 |
| DraI | TTTAAA | 1 cut(s) | 186 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1253 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1253 |
| Eam1104I | CTCTTC | 3 cut(s) | 321, 647, 1146 |
| EarI | CTCTTC | 3 cut(s) | 321, 647, 1146 |
| Ecl136II | GAGCTC | 1 cut(s) | 669 |
| Eco130I | CCWWGG | 1 cut(s) | 309 |
| Eco147I | AGGCCT | 1 cut(s) | 874 |
| Eco24I | GRGCYC | 1 cut(s) | 671 |
| Eco32I | GATATC | 1 cut(s) | 360 |
| Eco47I | GGWCC | 2 cut(s) | 1462, 1546 |
| Eco53kI | GAGCTC | 1 cut(s) | 669 |
| Eco57I | CTGAAG | 2 cut(s) | 21, 1250 |
| Eco81I | CCTNAGG | 1 cut(s) | 52 |
| EcoICRI | GAGCTC | 1 cut(s) | 669 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1427 |
| EcoO109I | RGGNCCY | 2 cut(s) | 937, 1462 |
| EcoRI | GAATTC | 1 cut(s) | 167 |
| EcoRV | GATATC | 1 cut(s) | 360 |
| EcoT14I | CCWWGG | 1 cut(s) | 309 |
| EcoT22I | ATGCAT | 1 cut(s) | 1330 |
| EcoT38I | GRGCYC | 1 cut(s) | 671 |
| ErhI | CCWWGG | 1 cut(s) | 309 |
| FaeI | CATG | 6 cut(s) | 128, 299, 313, 1276, 1480, 1493 |
| FaqI | GGGAC | 5 cut(s) | 9, 209, 719, 1105, 1448 |
| FatI | CATG | 6 cut(s) | 124, 295, 309, 1272, 1476, 1489 |
| FblI | GTMKAC | 1 cut(s) | 1345 |
| Fnu4HI | GCNGC | 2 cut(s) | 122, 1104 |
| FokI | GGATG | 5 cut(s) | 34, 727, 775, 839, 1509 |
| FriOI | GRGCYC | 1 cut(s) | 671 |
| Fsp4HI | GCNGC | 2 cut(s) | 122, 1104 |
| FspBI | CTAG | 4 cut(s) | 179, 233, 386, 1518 |
| GluI | GCNGC | 2 cut(s) | 122, 1104 |
| GsaI | CCCAGC | 3 cut(s) | 153, 609, 1234 |
| HaeIII | GGCC | 4 cut(s) | 308, 454, 874, 938 |
| HgaI | GACGC | 2 cut(s) | 16, 1154 |
| Hin1II | CATG | 6 cut(s) | 128, 299, 313, 1276, 1480, 1493 |
| HincII | GTYRAC | 1 cut(s) | 1114 |
| HindII | GTYRAC | 1 cut(s) | 1114 |
| HindIII | AAGCTT | 1 cut(s) | 464 |
| HinfI | GANTC | 2 cut(s) | 513, 1287 |
| HphI | GGTGA | 2 cut(s) | 554, 1364 |
| Hpy166II | GTNNAC | 4 cut(s) | 679, 951, 1114, 1346 |
| Hpy188I | TCNGA | 2 cut(s) | 109, 987 |
| Hpy188III | TCNNGA | 4 cut(s) | 428, 566, 980, 1142 |
| Hpy8I | GTNNAC | 4 cut(s) | 679, 951, 1114, 1346 |
| Hpy99I | CGWCG | 1 cut(s) | 194 |
| HpyAV | CCTTC | 7 cut(s) | 45, 857, 928, 1172, 1423, 1507, 1559 |
| HpyCH4III | ACNGT | 4 cut(s) | 683, 906, 914, 1255 |
| HpyCH4IV | ACGT | 1 cut(s) | 597 |
| HpyCH4V | TGCA | 5 cut(s) | 124, 961, 1166, 1328, 1500 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 320, 1172 |
| HpyF3I | CTNAG | 8 cut(s) | 52, 108, 482, 555, 665, 1213, 1281, 1467 |
| HpySE526I | ACGT | 1 cut(s) | 597 |
| Hsp92II | CATG | 6 cut(s) | 128, 299, 313, 1276, 1480, 1493 |
| Kzo9I | GATC | 1 cut(s) | 982 |
| LguI | GCTCTTC | 1 cut(s) | 321 |
| LmnI | GCTCC | 1 cut(s) | 1021 |
| Lsp1109I | GCAGC | 2 cut(s) | 108, 1090 |
| LweI | GCATC | 3 cut(s) | 370, 948, 1487 |
| MaeI | CTAG | 4 cut(s) | 179, 233, 386, 1518 |
| MaeII | ACGT | 1 cut(s) | 597 |
| MaeIII | GTNAC | 5 cut(s) | 205, 270, 997, 1244, 1408 |
| MalI | GATC | 1 cut(s) | 984 |
| MboI | GATC | 1 cut(s) | 982 |
| MboII | GAAGA | 6 cut(s) | 308, 508, 664, 733, 1060, 1163 |
| MhlI | GDGCHC | 1 cut(s) | 671 |
| MlyI | GAGTC | 1 cut(s) | 507 |
| MmeI | TCCRAC | 3 cut(s) | 113, 594, 804 |
| Mph1103I | ATGCAT | 1 cut(s) | 1330 |
| MseI | TTAA | 9 cut(s) | 185, 374, 462, 636, 891, 899, 929, 1323, 1394 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1481 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 320, 1172 |
| NcoI | CCATGG | 1 cut(s) | 309 |
| NdeII | GATC | 1 cut(s) | 982 |
| NlaIII | CATG | 6 cut(s) | 128, 299, 313, 1276, 1480, 1493 |
| NlaIV | GGNNCC | 1 cut(s) | 1464 |
| NmeAIII | GCCGAG | 1 cut(s) | 1097 |
| NmuCI | GTSAC | 1 cut(s) | 1244 |
| NsiI | ATGCAT | 1 cut(s) | 1330 |
| NspI | RCATGY | 3 cut(s) | 128, 299, 1493 |
| PaeI | GCATGC | 1 cut(s) | 128 |
| PceI | AGGCCT | 1 cut(s) | 874 |
| PciSI | GCTCTTC | 1 cut(s) | 321 |
| PfeI | GAWTC | 1 cut(s) | 1287 |
| PflFI | GACNNNGTC | 1 cut(s) | 10 |
| PkrI | GCNGC | 2 cut(s) | 123, 1105 |
| PleI | GAGTC | 1 cut(s) | 507 |
| PpsI | GAGTC | 1 cut(s) | 507 |
| PpuMI | RGGWCCY | 1 cut(s) | 1462 |
| PshBI | ATTAAT | 2 cut(s) | 636, 1323 |
| Psp124BI | GAGCTC | 1 cut(s) | 671 |
| Psp5II | RGGWCCY | 1 cut(s) | 1462 |
| PspFI | CCCAGC | 3 cut(s) | 149, 605, 1230 |
| PspN4I | GGNNCC | 1 cut(s) | 1464 |
| PspPI | GGNCC | 3 cut(s) | 937, 1462, 1546 |
| PspPPI | RGGWCCY | 1 cut(s) | 1462 |
| PstNI | CAGNNNCTG | 1 cut(s) | 209 |
| PsyI | GACNNNGTC | 1 cut(s) | 10 |
| RsaI | GTAC | 3 cut(s) | 553, 680, 1263 |
| RsaNI | GTAC | 3 cut(s) | 552, 679, 1262 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1481 |
| SacI | GAGCTC | 1 cut(s) | 671 |
| SapI | GCTCTTC | 1 cut(s) | 321 |
| SaqAI | TTAA | 9 cut(s) | 185, 374, 462, 636, 891, 899, 929, 1323, 1394 |
| SatI | GCNGC | 2 cut(s) | 122, 1104 |
| Sau3AI | GATC | 1 cut(s) | 982 |
| Sau96I | GGNCC | 3 cut(s) | 937, 1462, 1546 |
| ScaI | AGTACT | 1 cut(s) | 1263 |
| SchI | GAGTC | 1 cut(s) | 507 |
| SduI | GDGCHC | 1 cut(s) | 671 |
| SfaNI | GCATC | 3 cut(s) | 370, 948, 1487 |
| SinI | GGWCC | 2 cut(s) | 1462, 1546 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1481 |
| SphI | GCATGC | 1 cut(s) | 128 |
| SseBI | AGGCCT | 1 cut(s) | 874 |
| SsiI | CCGC | 1 cut(s) | 649 |
| SspMI | CTAG | 4 cut(s) | 179, 233, 386, 1518 |
| SstI | GAGCTC | 1 cut(s) | 671 |
| StuI | AGGCCT | 1 cut(s) | 874 |
| StyI | CCWWGG | 1 cut(s) | 309 |
| TaaI | ACNGT | 4 cut(s) | 683, 906, 914, 1255 |
| TaiI | ACGT | 1 cut(s) | 600 |
| TaqI | TCGA | 6 cut(s) | 325, 346, 356, 884, 1290, 1441 |
| TatI | WGTACW | 2 cut(s) | 678, 1261 |
| TfiI | GAWTC | 1 cut(s) | 1287 |
| Tru1I | TTAA | 9 cut(s) | 185, 374, 462, 636, 891, 899, 929, 1323, 1394 |
| Tru9I | TTAA | 9 cut(s) | 185, 374, 462, 636, 891, 899, 929, 1323, 1394 |
| TscAI | CASTG | 2 cut(s) | 45, 917 |
| TseFI | GTSAC | 1 cut(s) | 1244 |
| TseI | GCWGC | 2 cut(s) | 121, 1103 |
| Tsp45I | GTSAC | 1 cut(s) | 1244 |
| TspDTI | ATGAA | 5 cut(s) | 659, 843, 869, 1442, 1530 |
| TspRI | CASTG | 2 cut(s) | 45, 917 |
| Tth111I | GACNNNGTC | 1 cut(s) | 10 |
| VpaK11BI | GGWCC | 2 cut(s) | 1462, 1546 |
| VspI | ATTAAT | 2 cut(s) | 636, 1323 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1427 |
| XapI | RAATTY | 3 cut(s) | 167, 243, 1136 |
| XceI | RCATGY | 3 cut(s) | 128, 299, 1493 |
| XmiI | GTMKAC | 1 cut(s) | 1345 |
| XspI | CTAG | 4 cut(s) | 179, 233, 386, 1518 |
| ZrmI | AGTACT | 1 cut(s) | 1263 |
| Zsp2I | ATGCAT | 1 cut(s) | 1330 |