MD02G1140800.v1.1

Phosphatidylinositol phosphatidylcholine transfer protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
11709930 .. 11718821
8892 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1140800.v1.1.491

Sequence Viewer

Length: 1143 bp
ATGGACCGCTATCTCAAGTACCATGTGCAGGAGTTTGAAAGGACATTTGCGGTTAAGTTTCCAGCTTGTTCAATTGCAGCAAAGAAGAACATTGATCAAAGTACAACTATCCTCGATGTGCAAGGAGTGGGATTTAAGAATTTCAACAAAGCTGCCAGGGAACTTATTACTCGCCTTCAGAAGATTGACGGTGACAATTATCCTGAGACCTTGAATCGCATGTTTATCATCAACGCTGGTTCTGGCTTTAGAATGTTGTGGAACAGCGTGAAGTCGTTCCTTGACCCGAAGACTACAGCAAAGATTAATGTCCTTGGCAACAAGTATCAGAGCAAGTTGCTTGAAATAATTGATGCTAGCGAATTGCCCAAGTTTTTAGGAGGTACATGTACTTGTTCTGATCAAGGAGGCTGTATGCGTTCGGACAAGGGACCCTGGAAACAACCTGAGATCGTGAAGATGGTTCAAAACGGCATTCATAAATGTTCAAGAAAACCTGGAGTTCAAGTATCGCTAGCCAAAACTCGCGAAGCGTCTTTCAGGCGCGAGGACAGTGCCTCGATGGTTGGTAAATCCGTGGATTCAAGTTGGCCAATGGCGACGGGGAATGTTAAATTTGCCCTCTCAAACGCTAAATCATCTAAGAATTTAGCAGGAGATTGTTTCACCAGGAACAATGCTTGCAAACTTCCTGAAGGGTTCGGCTCTCAGATTATGGCTGCTATTCTGACGTTTCTTATGGGCATTGTCGCCATGGTCAGACTAACACGTAGCATGCCGAAGAGGCTCACTGACTCCACCTTCTACTCCAGCACTGTCTGCGACGGTGACACAATGGTCAAAGGCCAGGGCTCTTCACACGCTGCCATCTCCGGCTCAGATCTCATGACTGTCATGAAACGCATGGCTGAGTTGGAAGAGAGAATGACTGTTTTGAACATGAAACCAGCCACCGTGCCAGCTCAGAAGGAGGAAATGCTGAATACTGCTCTAGGCCGGGTTGGTGCCTTGGAGAAAGAGCTTATGGCAACAAAGCAGGCTCTCGAGGAGTCGCTTACCCAGCAAGAGGAACTCTTTGGCTCTCTTGACAAAAAGAAGAAGAGGAAGAACAACATGAAGAAGAAAATGTTCAATATCTGGTGA

Protein Analysis

381

Amino Acids

42.26

Weight (kDa)

9.6

Isoelectric Point (pI)

47.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 6 - 128 3.3e-23 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 836
AccB1I GGYRCC 1 cut(s) 1004
AccII CGCG 2 cut(s) 528, 546
AciI CCGC 2 cut(s) 7, 50
AcoI YGGCCR 1 cut(s) 590
AcsI RAATTY 3 cut(s) 139, 614, 646
AcuI CTGAAG 2 cut(s) 161, 714
AfaI GTAC 4 cut(s) 20, 103, 385, 391
AfiI CCNNNNNNNGG 2 cut(s) 28, 1066
AflIII ACRYGT 2 cut(s) 386, 767
AjnI CCWGG 5 cut(s) 155, 434, 496, 668, 846
AluBI AGCT 4 cut(s) 65, 152, 962, 1021
AluI AGCT 4 cut(s) 65, 152, 962, 1021
Alw26I GTCTC 1 cut(s) 200
Ama87I CYCGRG 1 cut(s) 1043
AoxI GGCC 3 cut(s) 590, 844, 994
ApeKI GCWGC 4 cut(s) 77, 152, 719, 863
ApoI RAATTY 3 cut(s) 139, 614, 646
AseI ATTAAT 1 cut(s) 306
Asp700I GAANNNNTTC 2 cut(s) 275, 1127
AspLEI GCGC 1 cut(s) 546
AspS9I GGNCC 2 cut(s) 4, 431
AsuC2I CCSGG 1 cut(s) 998
AsuHPI GGTGA 3 cut(s) 203, 658, 839
AsuNHI GCTAGC 2 cut(s) 356, 514
AvaI CYCGRG 1 cut(s) 1043
AvaII GGWCC 2 cut(s) 4, 431
BalI TGGCCA 1 cut(s) 592
BanI GGYRCC 1 cut(s) 1004
BanII GRGCYC 1 cut(s) 854
BbsI GAAGAC 1 cut(s) 296
BbvI GCAGC 4 cut(s) 89, 139, 706, 850
BccI CCATC 3 cut(s) 454, 556, 875
BceAI ACGGC 1 cut(s) 487
BcgI CGANNNNNNTGC 2 cut(s) 536, 570
BciT130I CCWGG 5 cut(s) 157, 436, 498, 670, 848
BclI TGATCA 2 cut(s) 94, 400
BcnI CCSGG 1 cut(s) 998
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 3 cut(s) 357, 515, 992
BfmI CTRYAG 1 cut(s) 294
BglI GCCNNNNNGGC 1 cut(s) 784
BglII AGATCT 1 cut(s) 880
BisI GCNGC 4 cut(s) 78, 153, 720, 864
BlsI GCNGC 4 cut(s) 79, 154, 721, 865
Bme1390I CCNGG 6 cut(s) 157, 436, 498, 670, 848, 998
Bme18I GGWCC 2 cut(s) 4, 431
BmeT110I CYCGRG 1 cut(s) 1043
BmgT120I GGNCC 2 cut(s) 4, 431
BmiI GGNNCC 3 cut(s) 432, 433, 1006
BmrFI CCNGG 6 cut(s) 157, 436, 498, 670, 848, 998
BmsI GCATC 1 cut(s) 343
BmtI GCTAGC 2 cut(s) 360, 518
BpiI GAAGAC 1 cut(s) 296
BpmI CTGGAG 2 cut(s) 519, 793
BpuMI CCSGG 1 cut(s) 998
BsaAI YACGTR 1 cut(s) 770
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 7 cut(s) 156, 313, 434, 576, 753, 847, 1008
BsaXI ACNNNNNCTCC 2 cut(s) 492, 522
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 1066
BseBI CCWGG 5 cut(s) 157, 436, 498, 670, 848
BseDI CCNNGG 7 cut(s) 156, 313, 434, 576, 753, 847, 1008
BseLI CCNNNNNNNGG 2 cut(s) 28, 1066
BseMII CTCAG 6 cut(s) 195, 438, 722, 891, 900, 977
BseRI GAGGAG 1 cut(s) 1061
BseXI GCAGC 4 cut(s) 89, 139, 706, 850
BseYI CCCAGC 1 cut(s) 1059
BsgI GTGCAG 1 cut(s) 47
Bsh1236I CGCG 2 cut(s) 528, 546
BshFI GGCC 3 cut(s) 592, 846, 996
BshNI GGYRCC 1 cut(s) 1004
BsiHKCI CYCGRG 1 cut(s) 1043
BsiSI CCGG 2 cut(s) 873, 997
BslFI GGGAC 1 cut(s) 444
BslI CCNNNNNNNGG 2 cut(s) 28, 1066
BsmAI GTCTC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 444
BsmI GAATGC 1 cut(s) 474
BsnI GGCC 3 cut(s) 592, 846, 996
Bso31I GGTCTC 1 cut(s) 200
BsoBI CYCGRG 1 cut(s) 1043
Bsp1286I GDGCHC 1 cut(s) 854
Bsp143I GATC 4 cut(s) 94, 400, 450, 880
Bsp19I CCATGG 1 cut(s) 753
Bsp68I TCGCGA 1 cut(s) 528
BspACI CCGC 2 cut(s) 7, 50
BspANI GGCC 3 cut(s) 592, 846, 996
BspCNI CTCAG 6 cut(s) 196, 439, 721, 890, 901, 976
BspFNI CGCG 2 cut(s) 528, 546
BspHI TCATGA 2 cut(s) 885, 894
BspLI GGNNCC 3 cut(s) 432, 433, 1006
BspOI GCTAGC 2 cut(s) 360, 518
BspQI GCTCTTC 1 cut(s) 859
BspT107I GGYRCC 1 cut(s) 1004
BspTNI GGTCTC 1 cut(s) 200
BssECI CCNNGG 7 cut(s) 156, 313, 434, 576, 753, 847, 1008
BssMI GATC 4 cut(s) 94, 400, 450, 880
BssT1I CCWWGG 3 cut(s) 313, 753, 1008
Bst2UI CCWGG 5 cut(s) 157, 436, 498, 670, 848
Bst4CI ACNGT 7 cut(s) 191, 554, 817, 827, 892, 931, 955
Bst6I CTCTTC 4 cut(s) 776, 859, 912, 1094
BstAPI GCANNNNNTGC 1 cut(s) 819
BstBAI YACGTR 1 cut(s) 770
BstC8I GCNNGC 6 cut(s) 358, 516, 682, 776, 960, 1038
BstDEI CTNAG 7 cut(s) 204, 447, 642, 708, 877, 909, 963
BstDSI CCRYGG 2 cut(s) 576, 753
BstFNI CGCG 2 cut(s) 528, 546
BstHHI GCGC 1 cut(s) 546
BstKTI GATC 4 cut(s) 97, 403, 453, 883
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 4 cut(s) 94, 400, 450, 880
BstMWI GCNNNNNNNGC 3 cut(s) 784, 819, 1060
BstNI CCWGG 5 cut(s) 157, 436, 498, 670, 848
BstNSI RCATGY 3 cut(s) 223, 390, 778
BstSCI CCNGG 6 cut(s) 155, 434, 496, 668, 846, 996
BstSFI CTRYAG 1 cut(s) 294
BstUI CGCG 2 cut(s) 528, 546
BstV1I GCAGC 4 cut(s) 89, 139, 706, 850
BstV2I GAAGAC 1 cut(s) 296
BstX2I RGATCY 1 cut(s) 880
BstYI RGATCY 1 cut(s) 880
BsuRI GGCC 3 cut(s) 592, 846, 996
BtgI CCRYGG 2 cut(s) 576, 753
BtsIMutI CAGTG 3 cut(s) 559, 789, 813
BtuMI TCGCGA 1 cut(s) 528
Cac8I GCNNGC 6 cut(s) 358, 516, 682, 776, 960, 1038
CciI TCATGA 2 cut(s) 885, 894
CfoI GCGC 1 cut(s) 546
Cfr13I GGNCC 2 cut(s) 4, 431
CseI GACGC 1 cut(s) 522
Csp6I GTAC 4 cut(s) 19, 102, 384, 390
CviQI GTAC 4 cut(s) 19, 102, 384, 390
DdeI CTNAG 7 cut(s) 204, 447, 642, 708, 877, 909, 963
DpnI GATC 4 cut(s) 96, 402, 452, 882
DpnII GATC 4 cut(s) 94, 400, 450, 880
DrdI GACNNNNNNGTC 1 cut(s) 836
DseDI GACNNNNNNGTC 1 cut(s) 836
EaeI YGGCCR 1 cut(s) 590
Eam1104I CTCTTC 4 cut(s) 776, 859, 912, 1094
EarI CTCTTC 4 cut(s) 776, 859, 912, 1094
Eco130I CCWWGG 3 cut(s) 313, 753, 1008
Eco24I GRGCYC 1 cut(s) 854
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 2 cut(s) 4, 431
Eco57I CTGAAG 2 cut(s) 161, 714
Eco88I CYCGRG 1 cut(s) 1043
EcoO109I RGGNCCY 1 cut(s) 431
EcoRII CCWGG 5 cut(s) 155, 434, 496, 668, 846
EcoT14I CCWWGG 3 cut(s) 313, 753, 1008
EcoT38I GRGCYC 1 cut(s) 854
ErhI CCWWGG 3 cut(s) 313, 753, 1008
FaqI GGGAC 1 cut(s) 444
FbaI TGATCA 2 cut(s) 94, 400
Fnu4HI GCNGC 4 cut(s) 78, 153, 720, 864
FriOI GRGCYC 1 cut(s) 854
Fsp4HI GCNGC 4 cut(s) 78, 153, 720, 864
FspBI CTAG 3 cut(s) 357, 515, 992
GlaI GCGC 1 cut(s) 545
GluI GCNGC 4 cut(s) 78, 153, 720, 864
GsaI CCCAGC 1 cut(s) 1063
GsuI CTGGAG 2 cut(s) 519, 793
HaeIII GGCC 3 cut(s) 592, 846, 996
HapII CCGG 2 cut(s) 873, 997
HgaI GACGC 1 cut(s) 522
HhaI GCGC 1 cut(s) 546
Hin6I GCGC 1 cut(s) 544
HinP1I GCGC 1 cut(s) 544
HinfI GANTC 4 cut(s) 214, 581, 794, 1049
HpaII CCGG 2 cut(s) 873, 997
HphI GGTGA 3 cut(s) 203, 658, 839
Hpy188I TCNGA 9 cut(s) 180, 330, 400, 424, 711, 729, 761, 880, 966
Hpy188III TCNNGA 9 cut(s) 203, 454, 489, 527, 692, 886, 895, 1043, 1085
Hpy99I CGWCG 2 cut(s) 604, 827
HpyAV CCTTC 4 cut(s) 185, 689, 811, 961
HpyCH4III ACNGT 7 cut(s) 191, 554, 817, 827, 892, 931, 955
HpyCH4IV ACGT 2 cut(s) 731, 769
HpyCH4V TGCA 4 cut(s) 28, 77, 121, 684
HpyF10VI GCNNNNNNNGC 3 cut(s) 784, 819, 1060
HpyF3I CTNAG 7 cut(s) 204, 447, 642, 708, 877, 909, 963
HpySE526I ACGT 2 cut(s) 731, 769
HspAI GCGC 1 cut(s) 544
KflI GGGWCCC 1 cut(s) 431
Ksp22I TGATCA 2 cut(s) 94, 400
Kzo9I GATC 4 cut(s) 94, 400, 450, 880
LguI GCTCTTC 1 cut(s) 859
Lsp1109I GCAGC 4 cut(s) 89, 139, 706, 850
LweI GCATC 1 cut(s) 343
MaeI CTAG 3 cut(s) 357, 515, 992
MaeII ACGT 2 cut(s) 731, 769
MaeIII GTNAC 2 cut(s) 191, 827
MalI GATC 4 cut(s) 96, 402, 452, 882
MboI GATC 4 cut(s) 94, 400, 450, 880
MfeI CAATTG 1 cut(s) 72
MflI RGATCY 1 cut(s) 880
MhlI GDGCHC 1 cut(s) 854
MlsI TGGCCA 1 cut(s) 592
MluCI AATT 7 cut(s) 72, 139, 196, 348, 362, 614, 646
MluNI TGGCCA 1 cut(s) 592
MlyI GAGTC 2 cut(s) 788, 1058
MmeI TCCRAC 1 cut(s) 894
Mox20I TGGCCA 1 cut(s) 592
MroXI GAANNNNTTC 2 cut(s) 275, 1127
MscI TGGCCA 1 cut(s) 592
MseI TTAA 4 cut(s) 54, 135, 306, 612
Msp20I TGGCCA 1 cut(s) 592
MspI CCGG 2 cut(s) 873, 997
MspR9I CCNGG 6 cut(s) 157, 436, 498, 670, 848, 998
MunI CAATTG 1 cut(s) 72
Mva1269I GAATGC 1 cut(s) 474
MvaI CCWGG 5 cut(s) 157, 436, 498, 670, 848
MvnI CGCG 2 cut(s) 528, 546
MwoI GCNNNNNNNGC 3 cut(s) 784, 819, 1060
NciI CCSGG 1 cut(s) 998
NcoI CCATGG 1 cut(s) 753
NdeII GATC 4 cut(s) 94, 400, 450, 880
NheI GCTAGC 2 cut(s) 356, 514
NlaIV GGNNCC 3 cut(s) 432, 433, 1006
NmuCI GTSAC 2 cut(s) 191, 827
NruI TCGCGA 1 cut(s) 528
NspI RCATGY 3 cut(s) 223, 390, 778
PaeI GCATGC 1 cut(s) 778
PaeR7I CTCGAG 1 cut(s) 1043
PagI TCATGA 2 cut(s) 885, 894
PciI ACATGT 1 cut(s) 386
PciSI GCTCTTC 1 cut(s) 859
PctI GAATGC 1 cut(s) 474
PdmI GAANNNNTTC 2 cut(s) 275, 1127
PfeI GAWTC 2 cut(s) 214, 581
PkrI GCNGC 4 cut(s) 79, 154, 721, 865
PleI GAGTC 2 cut(s) 788, 1057
PpsI GAGTC 2 cut(s) 788, 1057
Ppu21I YACGTR 1 cut(s) 770
PpuMI RGGWCCY 1 cut(s) 431
PscI ACATGT 1 cut(s) 386
PshBI ATTAAT 1 cut(s) 306
Psp5II RGGWCCY 1 cut(s) 431
Psp6I CCWGG 5 cut(s) 155, 434, 496, 668, 846
PspFI CCCAGC 1 cut(s) 1059
PspGI CCWGG 5 cut(s) 155, 434, 496, 668, 846
PspN4I GGNNCC 3 cut(s) 432, 433, 1006
PspPI GGNCC 2 cut(s) 4, 431
PspPPI RGGWCCY 1 cut(s) 431
PsuI RGATCY 1 cut(s) 880
RruI TCGCGA 1 cut(s) 528
RsaI GTAC 4 cut(s) 20, 103, 385, 391
RsaNI GTAC 4 cut(s) 19, 102, 384, 390
SapI GCTCTTC 1 cut(s) 859
SaqAI TTAA 4 cut(s) 54, 135, 306, 612
SatI GCNGC 4 cut(s) 78, 153, 720, 864
Sau3AI GATC 4 cut(s) 94, 400, 450, 880
Sau96I GGNCC 2 cut(s) 4, 431
SchI GAGTC 2 cut(s) 788, 1058
ScrFI CCNGG 6 cut(s) 157, 436, 498, 670, 848, 998
SduI GDGCHC 1 cut(s) 854
SfaNI GCATC 1 cut(s) 343
SfcI CTRYAG 1 cut(s) 294
Sfr274I CTCGAG 1 cut(s) 1043
SinI GGWCC 2 cut(s) 4, 431
SlaI CTCGAG 1 cut(s) 1043
SmlI CTYRAG 2 cut(s) 14, 1043
SmoI CTYRAG 2 cut(s) 14, 1043
SphI GCATGC 1 cut(s) 778
Sse9I AATT 7 cut(s) 72, 139, 196, 348, 362, 614, 646
SsiI CCGC 2 cut(s) 7, 50
SspMI CTAG 3 cut(s) 357, 515, 992
StyD4I CCNGG 6 cut(s) 155, 434, 496, 668, 846, 996
StyI CCWWGG 3 cut(s) 313, 753, 1008
TaaI ACNGT 7 cut(s) 191, 554, 817, 827, 892, 931, 955
TaiI ACGT 2 cut(s) 734, 772
TaqI TCGA 3 cut(s) 114, 560, 1044
TasI AATT 7 cut(s) 72, 139, 196, 348, 362, 614, 646
TatI WGTACW 2 cut(s) 101, 389
TfiI GAWTC 2 cut(s) 214, 581
Tru1I TTAA 4 cut(s) 54, 135, 306, 612
Tru9I TTAA 4 cut(s) 54, 135, 306, 612
TscAI CASTG 3 cut(s) 559, 796, 820
TseFI GTSAC 2 cut(s) 191, 827
TseI GCWGC 4 cut(s) 77, 152, 719, 863
Tsp45I GTSAC 2 cut(s) 191, 827
TspDTI ATGAA 4 cut(s) 467, 911, 956, 1130
TspGWI ACGGA 1 cut(s) 565
TspRI CASTG 3 cut(s) 559, 796, 820
VpaK11BI GGWCC 2 cut(s) 4, 431
VspI ATTAAT 1 cut(s) 306
XapI RAATTY 3 cut(s) 139, 614, 646
XceI RCATGY 3 cut(s) 223, 390, 778
XhoI CTCGAG 1 cut(s) 1043
XmnI GAANNNNTTC 2 cut(s) 275, 1127
XspI CTAG 3 cut(s) 357, 515, 992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.