Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001777

Physical Location & Seq

Genomic Coordinates Reverse (-)

12494410 .. 12495382

Gene Structure 973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47522

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGTAAAAGTATCCAAGGAACTACTTTCAAGTATCCCCCAACTGCGGGTTCAACTTGGCAAATGGCGGTTAAGAATGGCAAAGCAGGAGGTTGTTATGATGCTCCCAAAGTTTATGATGGATTCAGCTCTCAGATTTCTGCTGCTATTATGGCATTTCTTATGGGGATTGTCACTATGGTCAAACTAACCCGTAACATGCCAAAGAGGCTCACTGATTCCACCTTCTACTCAAGCACTGTTTACGGTGATGACACAGCGTTCAAAAACCAGCCTTCACGCTCTACCATCTCCAGTACAGAGCTCATGTCTGTCATAAAACGTATGGCTGAATTGGAAGAGAGAGTTAAACCACCTGCCAGGCCAAGTGGGAATGAGGAACTTCTGAATGCTGCTATGGGCCGAGTTGATGCCTTGGAGCATGAGCTTATGGCAACAAAGAAGGCTCTTCGCGAGTCACTTGCCCGACAAGACGAGATCTTGGGACCTAAGAAAAACAAGAAGAACAAGAAGAAGAAAATGATGAAATTTATGTGCTATCATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

182

Amino Acids

20.23

Weight (kDa)

9.79

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18180 AT2G18180 AT2G18180 AT2G18180 AT2G18180 AT4G36490
fragaria_vesca	FvH4_1g03070 FvH4_1g12640
malus_domestica	MD02G1140800.v1.1 MD15G1253600.v1.1
prunus_persica	Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G244900_v2.0.a1
pyrus_communis	pycom02g11090 pycom15g22320
rosa_chinensis	RchiOBHm_Chr2g0088201 RchiOBHm_Chr2g0100591 RchiOBHm_Chr2g0100601
rosa_laevigata	RLG00000015931
rosa_multiflora	Rmu_sc0001497.1_g000001 Rmu_sc0003275.1_g000070
rosa_roxburghii	Rroxscaffold_2G00142100 Rroxscaffold_7G00200090
rosa_rugosa	Rorug01G0481700 Rorug02G0089800 Rorug02G0089900 Rorug02G0090000 Rorug02G0090100 Rorug06G0039000 Rorug06G0389100
rosa_samantha	Rh2AG036800 Rh2AG139000 Rh2BG036000 Rh2BG142300 Rh2CG037100 Rh2CG144600 Rh2DG036500 Rh2DG144000
rosa_wichuraiana	Rw2G002900 Rw2G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	364
Acc36I	ACCTGC	1 cut(s)	364
AccII	CGCG	1 cut(s)	453
AciI	CCGC	2 cut(s)	47, 68
AcsI	RAATTY	1 cut(s)	527
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	2 cut(s)	46, 47
AgsI	TTSAA	3 cut(s)	31, 54, 265
AjnI	CCWGG	1 cut(s)	359
AjuI	GAANNNNNNNTTGG	2 cut(s)	34, 66
AluBI	AGCT	3 cut(s)	129, 304, 427
AluI	AGCT	3 cut(s)	129, 304, 427
Alw21I	GWGCWC	1 cut(s)	306
AoxI	GGCC	2 cut(s)	362, 400
ApeKI	GCWGC	2 cut(s)	143, 392
ApoI	RAATTY	1 cut(s)	527
AspS9I	GGNCC	2 cut(s)	400, 485
AsuHPI	GGTGA	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	485
BanII	GRGCYC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	130, 379
BccI	CCATC	2 cut(s)	113, 296
BcgI	CGANNNNNNTGC	2 cut(s)	443, 477
BciT130I	CCWGG	1 cut(s)	361
BciVI	GTATCC	2 cut(s)	23, 45
BfuAI	ACCTGC	1 cut(s)	364
BfuI	GTATCC	2 cut(s)	23, 45
BglI	GCCNNNNNGGC	1 cut(s)	208
BglII	AGATCT	1 cut(s)	477
BisI	GCNGC	2 cut(s)	144, 393
BlsI	GCNGC	2 cut(s)	145, 394
Bme1390I	CCNGG	1 cut(s)	361
Bme18I	GGWCC	1 cut(s)	485
BmgT120I	GGNCC	2 cut(s)	400, 485
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	1 cut(s)	361
BmsI	GCATC	2 cut(s)	91, 400
BpmI	CTGGAG	1 cut(s)	277
BpuEI	CTTGAG	1 cut(s)	217
BsaJI	CCNNGG	2 cut(s)	16, 414
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 47
Bse1I	ACTGG	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	361
BseDI	CCNNGG	2 cut(s)	16, 414
BseLI	CCNNNNNNNGG	2 cut(s)	46, 47
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	294
BseXI	GCAGC	2 cut(s)	130, 379
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	2 cut(s)	364, 402
BsiHKAI	GWGCWC	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	2 cut(s)	46, 47
BsmFI	GGGAC	1 cut(s)	498
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	2 cut(s)	364, 402
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	477
Bsp68I	TCGCGA	1 cut(s)	453
BspACI	CCGC	2 cut(s)	47, 68
BspANI	GGCC	2 cut(s)	364, 402
BspCNI	CTCAG	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	486
BspMI	ACCTGC	1 cut(s)	364
BspQI	GCTCTTC	1 cut(s)	453
BsrI	ACTGG	1 cut(s)	294
BssECI	CCNNGG	2 cut(s)	16, 414
BssMI	GATC	1 cut(s)	477
BssT1I	CCWWGG	2 cut(s)	16, 414
Bst2UI	CCWGG	1 cut(s)	361
Bst4CI	ACNGT	2 cut(s)	241, 248
Bst6I	CTCTTC	2 cut(s)	333, 453
BstDEI	CTNAG	2 cut(s)	132, 489
BstFNI	CGCG	1 cut(s)	453
BstKTI	GATC	1 cut(s)	480
BstMBI	GATC	1 cut(s)	477
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 208
BstNI	CCWGG	1 cut(s)	361
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	359
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	2 cut(s)	130, 379
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
BsuI	GTATCC	2 cut(s)	23, 45
BsuRI	GGCC	2 cut(s)	364, 402
BtsIMutI	CAGTG	2 cut(s)	213, 237
BtuMI	TCGCGA	1 cut(s)	453
BveI	ACCTGC	1 cut(s)	364
Cfr13I	GGNCC	2 cut(s)	400, 485
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	4 cut(s)	199, 307, 422, 542
CviJI	RGCY	9 cut(s)	129, 211, 274, 304, 329, 364, 402, 427, 446
CviKI_1	RGCY	9 cut(s)	129, 211, 274, 304, 329, 364, 402, 427, 446
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	2 cut(s)	132, 489
DpnI	GATC	1 cut(s)	479
DpnII	GATC	1 cut(s)	477
Eam1104I	CTCTTC	2 cut(s)	333, 453
EarI	CTCTTC	2 cut(s)	333, 453
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	2 cut(s)	16, 414
Eco24I	GRGCYC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	485
Eco53kI	GAGCTC	1 cut(s)	304
EcoICRI	GAGCTC	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	359
EcoT14I	CCWWGG	2 cut(s)	16, 414
EcoT38I	GRGCYC	1 cut(s)	306
ErhI	CCWWGG	2 cut(s)	16, 414
FaeI	CATG	4 cut(s)	202, 310, 425, 545
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	4 cut(s)	198, 306, 421, 541
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	2 cut(s)	144, 393
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	2 cut(s)	144, 393
GluI	GCNGC	2 cut(s)	144, 393
GsuI	CTGGAG	1 cut(s)	277
HaeIII	GGCC	2 cut(s)	364, 402
Hin1II	CATG	4 cut(s)	202, 310, 425, 545
HinfI	GANTC	3 cut(s)	123, 218, 455
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	135, 387
Hpy188III	TCNNGA	1 cut(s)	452
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	3 cut(s)	235, 285, 436
HpyCH4III	ACNGT	2 cut(s)	241, 248
HpyCH4IV	ACGT	1 cut(s)	322
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 208
HpyF3I	CTNAG	2 cut(s)	132, 489
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	4 cut(s)	202, 310, 425, 545
Kzo9I	GATC	1 cut(s)	477
LguI	GCTCTTC	1 cut(s)	453
LmnI	GCTCC	2 cut(s)	109, 418
LpnPI	CCDG	6 cut(s)	72, 284, 307, 346, 369, 373
Lsp1109I	GCAGC	2 cut(s)	130, 379
LweI	GCATC	2 cut(s)	91, 400
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	3 cut(s)	172, 194, 456
MalI	GATC	1 cut(s)	479
MboI	GATC	1 cut(s)	477
MboII	GAAGA	5 cut(s)	350, 440, 514, 523, 526
MflI	RGATCY	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	2 cut(s)	332, 527
MlyI	GAGTC	1 cut(s)	464
MnlI	CCTC	3 cut(s)	83, 201, 370
MseI	TTAA	2 cut(s)	72, 348
MspR9I	CCNGG	1 cut(s)	361
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	1 cut(s)	361
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	2 cut(s)	152, 208
NdeII	GATC	1 cut(s)	477
NlaIII	CATG	4 cut(s)	202, 310, 425, 545
NlaIV	GGNNCC	1 cut(s)	486
NmeAIII	GCCGAG	1 cut(s)	428
NmuCI	GTSAC	2 cut(s)	172, 456
NruI	TCGCGA	1 cut(s)	453
NspI	RCATGY	1 cut(s)	202
PaqCI	CACCTGC	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	453
PctI	GAATGC	1 cut(s)	394
PfeI	GAWTC	2 cut(s)	123, 218
PkrI	GCNGC	2 cut(s)	145, 394
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
PpuMI	RGGWCCY	1 cut(s)	485
Psp124BI	GAGCTC	1 cut(s)	306
Psp5II	RGGWCCY	1 cut(s)	485
Psp6I	CCWGG	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	359
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	2 cut(s)	400, 485
PspPPI	RGGWCCY	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	477
RruI	TCGCGA	1 cut(s)	453
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
SacI	GAGCTC	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	453
SaqAI	TTAA	2 cut(s)	72, 348
SatI	GCNGC	2 cut(s)	144, 393
Sau3AI	GATC	1 cut(s)	477
Sau96I	GGNCC	2 cut(s)	400, 485
SchI	GAGTC	1 cut(s)	464
ScrFI	CCNGG	1 cut(s)	361
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	8 cut(s)	94, 131, 227, 306, 325, 358, 429, 490
SfaNI	GCATC	2 cut(s)	91, 400
SinI	GGWCC	1 cut(s)	485
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	2 cut(s)	332, 527
SsiI	CCGC	2 cut(s)	47, 68
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	359
StyI	CCWWGG	2 cut(s)	16, 414
TaaI	ACNGT	2 cut(s)	241, 248
TaiI	ACGT	1 cut(s)	325
TasI	AATT	2 cut(s)	332, 527
TatI	WGTACW	1 cut(s)	296
TfiI	GAWTC	2 cut(s)	123, 218
Tru1I	TTAA	2 cut(s)	72, 348
Tru9I	TTAA	2 cut(s)	72, 348
TscAI	CASTG	2 cut(s)	220, 244
TseFI	GTSAC	2 cut(s)	172, 456
TseI	GCWGC	2 cut(s)	143, 392
Tsp45I	GTSAC	2 cut(s)	172, 456
TspDTI	ATGAA	1 cut(s)	539
TspRI	CASTG	2 cut(s)	220, 244
VpaK11BI	GGWCC	1 cut(s)	485
XapI	RAATTY	1 cut(s)	527
XceI	RCATGY	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.