FvH4_1g03070

phosphatidylinositol phosphatidylcholine transfer protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
1734451 .. 1736434
1984 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03070.t1

Sequence Viewer

Length: 1674 bp
ATGGCTGGCTCTGTATCTCCCTTACCAGTAATGTCCGGATCGTTAAAGAAGAAAGCAACACATGCCTTGCGAAACTCTTTTACCCGAAAGGGAAGGAGAAGCAGCAAGGTCATGTCTGTCGAAATTGCAGATGTGCATGATGTTGAAGAAGGTCAGGCTGTTGACAAGCTTCGTCAGGCGCTTATATTGGACGAGCTTCTTCCTAGCAAGCACGATGACTATCATATGATGCTTCGGTTTTTAAAGGCCAGGAAATTCGACATTGAGCAGACCAAGAAAATGTGGTCTCAAATGCTTGAATGGAGGAAGGAATTCGGAGCTGACACAATCAGAGATGACTTTGAATTCAAGGAACTCAATAAAGTCCTGGATTATTATCCCCAAGGACATCATGGGGTAGACAAAGAAGGAAGACCAGTCTATATTGAGAGACTGGGACTAGTTGATTCAACTAAGCTCATGCAGGTGACAACCATGGACAGGTATGTGAAATACCATGTTCAGGAATTCGAACGAACATTTGATGTTAAATTCCCAGCTTGTTCGATTGCAGCGAAGAAGCACATTGATCAAAGTACAACTATTCTTGATGTTCAAGGAGTTGGACTTAAAAATTTCAACAAAGCTGCTAGGGAGCTTATTTTAAGCCTTCAGAAGATTGATGGTGACAACTATCCTGAGACCTTGAGCCGTATGTTTATAATCAATGCCGGTTCTGGTTTTAGAATGTTGTGGAGCACTGTCAAGTCTTTCCTTGATCCAAGGACAACGGCAAAGATTCATGTCCTTGGGAACAAGTACCAGAGCAATTTGCTAGAGATTATTGATGCTAGTGAGTTGCCAGAGTTTTTAGGAGGTAAATGTACTTGTGCTGACGAAGGTGGATGTATGCGTTCCGATAAGGGACCATGGAAGAATCCAGAGATAATGAGTATGGTCCAAAATGGTGATCATAAGTGTTCAAAGGAACCAGGGACTCAGGTGGCTGAAGACAAGAAGTCAGTGCATGTATCCGATGACGAATTTGTGTATTCTACGGGAAATTCCTCCCCATATTTGCCGAAAAATTTCCAAGAATATTTCAAGCATGAAGAGTATATCCCTATGGTTGATAAAGCTATGGATACAACAAGTCACATTGTTGTGGGGAGTGTCAAATTTGACACATTTCCCACTTCTAAGTCGGTAGATTGTTTCGACATGCCTGAGGCTTGCAAACCTGCTGATGGGTTTAGTGCTCGATTTTCGGGTGCTATTATGGCATTTATCTTGAGCATAGTGGCTATTTTCCGGCTGCTAACAAGTAACGTGCCTAGGAAACTTGCTAATTCCACCTTCTACTCTAGTGCTGTCTGCCACGACGACACAATGCTGAAGAGCCGGGCGTCTTCTAAGTCTGCCAATGCCATTTCTGAAGCAGATTTCCAGTCCATCATTACACGCATTGCAGACTTGGAAGAGAGAGCCATTGTTTTGAGCACGAAACCAGTTACCATGCCACCTGAGAAGGAGGACTTGCTGAGTGCTGCTTTGAACCGGGTTGATGCCTTGGAGCGAGAGCTTATGGCAACTACTAAGGCTCTCCAAGAGTCAATGTGTCGCCAAGATGAGCTCTTGGCATATATTGAGAAGAAGAAGAGGAAGAGGAGGTTTTTCAAGTTTCAATGCTGGTGA

Protein Analysis

558

Amino Acids

63.18

Weight (kDa)

8.16

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 125 - 286 2.6e-30 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 701
AarI CACCTGC 1 cut(s) 454
Acc36I ACCTGC 2 cut(s) 454, 1228
AccI GTMKAC 1 cut(s) 399
AccIII TCCGGA 1 cut(s) 35
AclWI GGATC 2 cut(s) 46, 752
AcuI CTGAAG 4 cut(s) 635, 1008, 1394, 1434
AcyI GRCGYC 1 cut(s) 1385
AfaI GTAC 3 cut(s) 577, 800, 865
AfiI CCNNNNNNNGG 3 cut(s) 480, 502, 1226
AhdI GACNNNNNGTC 1 cut(s) 997
AhlI ACTAGT 1 cut(s) 439
AjnI CCWGG 3 cut(s) 248, 366, 970
Alw21I GWGCWC 4 cut(s) 740, 1240, 1481, 1614
Alw26I GTCTC 3 cut(s) 291, 424, 674
AlwI GGATC 2 cut(s) 46, 752
Aor13HI TCCGGA 1 cut(s) 35
AoxI GGCC 1 cut(s) 246
ApeKI GCWGC 5 cut(s) 102, 551, 626, 1294, 1526
Asp700I GAANNNNTTC 2 cut(s) 311, 1067
AspA2I CCTAGG 1 cut(s) 1313
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 2 cut(s) 905, 937
AsuC2I CCSGG 2 cut(s) 1382, 1538
AsuHPI GGTGA 3 cut(s) 478, 677, 959
AsuII TTCGAA 1 cut(s) 510
AvaII GGWCC 2 cut(s) 905, 937
AvrII CCTAGG 1 cut(s) 1313
AxyI CCTNAGG 1 cut(s) 1206
BanII GRGCYC 1 cut(s) 1614
BbsI GAAGAC 3 cut(s) 418, 996, 1380
Bbv12I GWGCWC 4 cut(s) 740, 1240, 1481, 1614
BbvI GCAGC 5 cut(s) 114, 563, 613, 1281, 1513
BccI CCATC 3 cut(s) 656, 1220, 1439
BceAI ACGGC 2 cut(s) 675, 786
BciT130I CCWGG 3 cut(s) 250, 368, 972
BciVI GTATCC 2 cut(s) 1021, 1117
BclI TGATCA 2 cut(s) 568, 949
BcnI CCSGG 2 cut(s) 1382, 1538
BcoDI GTCTC 3 cut(s) 291, 424, 674
BcuI ACTAGT 1 cut(s) 439
BfaI CTAG 7 cut(s) 204, 440, 630, 815, 831, 1314, 1344
BfoI RGCGCY 1 cut(s) 182
BfuAI ACCTGC 2 cut(s) 454, 1228
BfuI GTATCC 2 cut(s) 1021, 1117
BisI GCNGC 5 cut(s) 103, 552, 627, 1295, 1527
BlnI CCTAGG 1 cut(s) 1313
BlsI GCNGC 5 cut(s) 104, 553, 628, 1296, 1528
Bme1390I CCNGG 5 cut(s) 250, 368, 972, 1382, 1538
Bme18I GGWCC 2 cut(s) 905, 937
BmeRI GACNNNNNGTC 1 cut(s) 997
BmgT120I GGNCC 2 cut(s) 905, 937
BmiI GGNNCC 2 cut(s) 906, 969
BmrFI CCNGG 5 cut(s) 250, 368, 972, 1382, 1538
BmrI ACTGGG 1 cut(s) 443
BmsI GCATC 3 cut(s) 219, 817, 1534
BmuI ACTGGG 1 cut(s) 443
BpiI GAAGAC 3 cut(s) 418, 996, 1380
Bpu14I TTCGAA 1 cut(s) 510
BpuEI CTTGAG 2 cut(s) 706, 1291
BpuMI CCSGG 2 cut(s) 1382, 1538
BsaBI GATNNNNATC 2 cut(s) 219, 375
BsaHI GRCGYC 1 cut(s) 1385
BsaI GGTCTC 2 cut(s) 291, 674
BsaJI CCNNGG 8 cut(s) 382, 474, 761, 787, 908, 971, 1313, 1548
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 3 cut(s) 480, 502, 1226
Bse118I RCCGGY 1 cut(s) 710
Bse1I ACTGG 5 cut(s) 26, 416, 438, 1426, 1487
Bse21I CCTNAGG 1 cut(s) 1206
Bse3DI GCAATG 1 cut(s) 1443
Bse8I GATNNNNATC 2 cut(s) 219, 375
BseAI TCCGGA 1 cut(s) 35
BseBI CCWGG 3 cut(s) 250, 368, 972
BseDI CCNNGG 8 cut(s) 382, 474, 761, 787, 908, 971, 1313, 1548
BseGI GGATG 1 cut(s) 890
BseJI GATNNNNATC 2 cut(s) 219, 375
BseLI CCNNNNNNNGG 3 cut(s) 480, 502, 1226
BseMI GCAATG 1 cut(s) 1443
BseMII CTCAG 5 cut(s) 669, 992, 1197, 1494, 1511
BseNI ACTGG 5 cut(s) 26, 416, 438, 1426, 1487
BseRI GAGGAG 1 cut(s) 1660
BseXI GCAGC 5 cut(s) 114, 563, 613, 1281, 1513
BseYI CCCAGC 1 cut(s) 535
BshFI GGCC 1 cut(s) 248
BsiHKAI GWGCWC 4 cut(s) 740, 1240, 1481, 1614
BsiSI CCGG 5 cut(s) 36, 711, 1291, 1381, 1537
BslFI GGGAC 3 cut(s) 450, 918, 988
BslI CCNNNNNNNGG 3 cut(s) 480, 502, 1226
BsmAI GTCTC 3 cut(s) 291, 424, 674
BsmFI GGGAC 3 cut(s) 450, 918, 988
BsnI GGCC 1 cut(s) 248
Bso31I GGTCTC 2 cut(s) 291, 674
Bsp119I TTCGAA 1 cut(s) 510
Bsp1286I GDGCHC 4 cut(s) 740, 1240, 1481, 1614
Bsp13I TCCGGA 1 cut(s) 35
Bsp143I GATC 4 cut(s) 38, 568, 757, 949
Bsp19I CCATGG 2 cut(s) 474, 908
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 5 cut(s) 670, 991, 1198, 1495, 1512
BspEI TCCGGA 1 cut(s) 35
BspLI GGNNCC 2 cut(s) 906, 969
BspMI ACCTGC 2 cut(s) 454, 1228
BspPI GGATC 2 cut(s) 46, 752
BspQI GCTCTTC 1 cut(s) 1370
BspT104I TTCGAA 1 cut(s) 510
BspTNI GGTCTC 2 cut(s) 291, 674
BsrDI GCAATG 1 cut(s) 1443
BsrFI RCCGGY 1 cut(s) 710
BsrI ACTGG 5 cut(s) 26, 416, 438, 1426, 1487
BssAI RCCGGY 1 cut(s) 710
BssECI CCNNGG 8 cut(s) 382, 474, 761, 787, 908, 971, 1313, 1548
BssMI GATC 4 cut(s) 38, 568, 757, 949
BssNI GRCGYC 1 cut(s) 1385
BssT1I CCWWGG 7 cut(s) 382, 474, 761, 787, 908, 1313, 1548
Bst2UI CCWGG 3 cut(s) 250, 368, 972
Bst4CI ACNGT 1 cut(s) 742
Bst6I CTCTTC 5 cut(s) 1086, 1370, 1452, 1631, 1637
BstACI GRCGYC 1 cut(s) 1385
BstAPI GCANNNNNTGC 1 cut(s) 62
BstBI TTCGAA 1 cut(s) 510
BstC8I GCNNGC 3 cut(s) 7, 209, 1213
BstDEI CTNAG 9 cut(s) 453, 678, 978, 1179, 1206, 1392, 1503, 1520, 1575
BstDSI CCRYGG 2 cut(s) 474, 908
BstF5I GGATG 1 cut(s) 890
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 4 cut(s) 41, 571, 760, 952
BstMAI GTCTC 3 cut(s) 291, 424, 674
BstMBI GATC 4 cut(s) 38, 568, 757, 949
BstMWI GCNNNNNNNGC 2 cut(s) 62, 1259
BstNI CCWGG 3 cut(s) 250, 368, 972
BstNSI RCATGY 3 cut(s) 65, 1010, 1204
BstSCI CCNGG 5 cut(s) 248, 366, 970, 1380, 1536
BstV1I GCAGC 5 cut(s) 114, 563, 613, 1281, 1513
BstV2I GAAGAC 3 cut(s) 418, 996, 1380
Bsu36I CCTNAGG 1 cut(s) 1206
BsuI GTATCC 2 cut(s) 1021, 1117
BsuRI GGCC 1 cut(s) 248
BtgI CCRYGG 2 cut(s) 474, 908
BtsCI GGATG 1 cut(s) 890
BtsIMutI CAGTG 2 cut(s) 738, 1008
BveI ACCTGC 2 cut(s) 454, 1228
Cac8I GCNNGC 3 cut(s) 7, 209, 1213
CfoI GCGC 1 cut(s) 181
Cfr10I RCCGGY 1 cut(s) 710
Cfr13I GGNCC 2 cut(s) 905, 937
CseI GACGC 1 cut(s) 1374
Csp6I GTAC 3 cut(s) 576, 799, 864
CviQI GTAC 3 cut(s) 576, 799, 864
DdeI CTNAG 9 cut(s) 453, 678, 978, 1179, 1206, 1392, 1503, 1520, 1575
DpnI GATC 4 cut(s) 40, 570, 759, 951
DpnII GATC 4 cut(s) 38, 568, 757, 949
DraI TTTAAA 1 cut(s) 243
DriI GACNNNNNGTC 1 cut(s) 997
Eam1104I CTCTTC 5 cut(s) 1086, 1370, 1452, 1631, 1637
Eam1105I GACNNNNNGTC 1 cut(s) 997
EarI CTCTTC 5 cut(s) 1086, 1370, 1452, 1631, 1637
Ecl136II GAGCTC 1 cut(s) 1612
Eco130I CCWWGG 7 cut(s) 382, 474, 761, 787, 908, 1313, 1548
Eco24I GRGCYC 1 cut(s) 1614
Eco31I GGTCTC 2 cut(s) 291, 674
Eco47I GGWCC 2 cut(s) 905, 937
Eco53kI GAGCTC 1 cut(s) 1612
Eco57I CTGAAG 4 cut(s) 635, 1008, 1394, 1434
Eco81I CCTNAGG 1 cut(s) 1206
EcoICRI GAGCTC 1 cut(s) 1612
EcoRI GAATTC 3 cut(s) 311, 344, 506
EcoRII CCWGG 3 cut(s) 248, 366, 970
EcoT14I CCWWGG 7 cut(s) 382, 474, 761, 787, 908, 1313, 1548
EcoT38I GRGCYC 1 cut(s) 1614
ErhI CCWWGG 7 cut(s) 382, 474, 761, 787, 908, 1313, 1548
FalI AAGNNNNNCTT 2 cut(s) 1499, 1531
FaqI GGGAC 3 cut(s) 450, 918, 988
FauNDI CATATG 1 cut(s) 225
FbaI TGATCA 2 cut(s) 568, 949
FblI GTMKAC 1 cut(s) 399
Fnu4HI GCNGC 5 cut(s) 103, 552, 627, 1295, 1527
FokI GGATG 1 cut(s) 897
FriOI GRGCYC 1 cut(s) 1614
Fsp4HI GCNGC 5 cut(s) 103, 552, 627, 1295, 1527
FspBI CTAG 7 cut(s) 204, 440, 630, 815, 831, 1314, 1344
GlaI GCGC 1 cut(s) 180
GluI GCNGC 5 cut(s) 103, 552, 627, 1295, 1527
GsaI CCCAGC 1 cut(s) 539
HaeII RGCGCY 1 cut(s) 182
HaeIII GGCC 1 cut(s) 248
HapII CCGG 5 cut(s) 36, 711, 1291, 1381, 1537
HgaI GACGC 1 cut(s) 1374
HhaI GCGC 1 cut(s) 181
Hin1I GRCGYC 1 cut(s) 1385
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 5 cut(s) 446, 778, 916, 976, 1589
HpaII CCGG 5 cut(s) 36, 711, 1291, 1381, 1537
HphI GGTGA 3 cut(s) 478, 677, 959
Hpy166II GTNNAC 2 cut(s) 163, 400
Hpy188I TCNGA 6 cut(s) 317, 332, 654, 898, 1015, 1414
Hpy188III TCNNGA 6 cut(s) 36, 503, 587, 677, 920, 1270
Hpy8I GTNNAC 2 cut(s) 163, 400
Hpy99I CGWCG 1 cut(s) 1364
HpyAV CCTTC 8 cut(s) 87, 143, 301, 401, 659, 872, 1345, 1501
HpyCH4III ACNGT 1 cut(s) 742
HpyCH4IV ACGT 1 cut(s) 1308
HpyCH4V TGCA 7 cut(s) 128, 136, 463, 551, 1006, 1215, 1448
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 1259
HpyF3I CTNAG 9 cut(s) 453, 678, 978, 1179, 1206, 1392, 1503, 1520, 1575
HpySE526I ACGT 1 cut(s) 1308
Hsp92I GRCGYC 1 cut(s) 1385
HspAI GCGC 1 cut(s) 179
Kpn2I TCCGGA 1 cut(s) 35
Ksp22I TGATCA 2 cut(s) 568, 949
Kzo9I GATC 4 cut(s) 38, 568, 757, 949
LguI GCTCTTC 1 cut(s) 1370
LmnI GCTCC 4 cut(s) 317, 634, 735, 1552
Lsp1109I GCAGC 5 cut(s) 114, 563, 613, 1281, 1513
LweI GCATC 3 cut(s) 219, 817, 1534
MaeI CTAG 7 cut(s) 204, 440, 630, 815, 831, 1314, 1344
MaeII ACGT 1 cut(s) 1308
MaeIII GTNAC 5 cut(s) 466, 665, 1133, 1304, 1489
MalI GATC 4 cut(s) 40, 570, 759, 951
MboI GATC 4 cut(s) 38, 568, 757, 949
MhlI GDGCHC 4 cut(s) 740, 1240, 1481, 1614
MlyI GAGTC 2 cut(s) 970, 1598
MmeI TCCRAC 1 cut(s) 583
MnlI CCTC 8 cut(s) 297, 848, 1057, 1201, 1504, 1632, 1638, 1641
MroI TCCGGA 1 cut(s) 35
MroXI GAANNNNTTC 2 cut(s) 311, 1067
MseI TTAA 5 cut(s) 44, 242, 528, 609, 644
MslI CAYNNNNRTG 2 cut(s) 464, 1142
MspI CCGG 5 cut(s) 36, 711, 1291, 1381, 1537
MspR9I CCNGG 5 cut(s) 250, 368, 972, 1382, 1538
MvaI CCWGG 3 cut(s) 250, 368, 972
MwoI GCNNNNNNNGC 2 cut(s) 62, 1259
NciI CCSGG 2 cut(s) 1382, 1538
NcoI CCATGG 2 cut(s) 474, 908
NdeI CATATG 1 cut(s) 225
NdeII GATC 4 cut(s) 38, 568, 757, 949
NlaIV GGNNCC 2 cut(s) 906, 969
NmuCI GTSAC 3 cut(s) 466, 665, 1133
NspI RCATGY 3 cut(s) 65, 1010, 1204
NspV TTCGAA 1 cut(s) 510
PaqCI CACCTGC 1 cut(s) 454
PciSI GCTCTTC 1 cut(s) 1370
PcsI WCGNNNNNNNCGW 1 cut(s) 551
PdmI GAANNNNTTC 2 cut(s) 311, 1067
PfeI GAWTC 3 cut(s) 446, 778, 916
PfoI TCCNGGA 1 cut(s) 366
PkrI GCNGC 5 cut(s) 104, 553, 628, 1296, 1528
PleI GAGTC 2 cut(s) 970, 1597
PpsI GAGTC 2 cut(s) 970, 1597
PsiI TTATAA 1 cut(s) 701
Psp124BI GAGCTC 1 cut(s) 1614
Psp6I CCWGG 3 cut(s) 248, 366, 970
PspFI CCCAGC 1 cut(s) 535
PspGI CCWGG 3 cut(s) 248, 366, 970
PspN4I GGNNCC 2 cut(s) 906, 969
PspPI GGNCC 2 cut(s) 905, 937
RsaI GTAC 3 cut(s) 577, 800, 865
RsaNI GTAC 3 cut(s) 576, 799, 864
RseI CAYNNNNRTG 2 cut(s) 464, 1142
SacI GAGCTC 1 cut(s) 1614
SapI GCTCTTC 1 cut(s) 1370
SaqAI TTAA 5 cut(s) 44, 242, 528, 609, 644
SatI GCNGC 5 cut(s) 103, 552, 627, 1295, 1527
Sau3AI GATC 4 cut(s) 38, 568, 757, 949
Sau96I GGNCC 2 cut(s) 905, 937
SchI GAGTC 2 cut(s) 970, 1598
ScrFI CCNGG 5 cut(s) 250, 368, 972, 1382, 1538
SduI GDGCHC 4 cut(s) 740, 1240, 1481, 1614
SfaNI GCATC 3 cut(s) 219, 817, 1534
SfuI TTCGAA 1 cut(s) 510
SinI GGWCC 2 cut(s) 905, 937
SmiMI CAYNNNNRTG 2 cut(s) 464, 1142
SmlI CTYRAG 2 cut(s) 685, 1270
SmoI CTYRAG 2 cut(s) 685, 1270
SpeI ACTAGT 1 cut(s) 439
SspI AATATT 1 cut(s) 1079
SspMI CTAG 7 cut(s) 204, 440, 630, 815, 831, 1314, 1344
SstI GAGCTC 1 cut(s) 1614
StyD4I CCNGG 5 cut(s) 248, 366, 970, 1380, 1536
StyI CCWWGG 7 cut(s) 382, 474, 761, 787, 908, 1313, 1548
TaaI ACNGT 1 cut(s) 742
TaiI ACGT 1 cut(s) 1311
TaqI TCGA 6 cut(s) 120, 258, 510, 545, 1197, 1240
TatI WGTACW 2 cut(s) 575, 863
TfiI GAWTC 3 cut(s) 446, 778, 916
Tru1I TTAA 5 cut(s) 44, 242, 528, 609, 644
Tru9I TTAA 5 cut(s) 44, 242, 528, 609, 644
TscAI CASTG 2 cut(s) 745, 1008
TseFI GTSAC 3 cut(s) 466, 665, 1133
TseI GCWGC 5 cut(s) 102, 551, 626, 1294, 1526
Tsp45I GTSAC 3 cut(s) 466, 665, 1133
TspDTI ATGAA 2 cut(s) 770, 1104
TspRI CASTG 2 cut(s) 745, 1008
VpaK11BI GGWCC 2 cut(s) 905, 937
XceI RCATGY 3 cut(s) 65, 1010, 1204
XcmI CCANNNNNNNNNTGG 1 cut(s) 389
XmaJI CCTAGG 1 cut(s) 1313
XmiI GTMKAC 1 cut(s) 399
XmnI GAANNNNTTC 2 cut(s) 311, 1067
XspI CTAG 7 cut(s) 204, 440, 630, 815, 831, 1314, 1344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.