Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001777

Physical Location & Seq

Genomic Coordinates Reverse (-)

7168047 .. 7169264

Gene Structure 1218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0089900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGAGAAGGTATGCCAAGCTAATGACTACAGAGCTCCTTCTAGTCCTGCAGGCTACTCCTGCAAAAGGCCTGAAAATGTTGTGGTAGATGATTTCCTAGGCATTGCTGGTAACACCTCAAACATTGCAAGAGGTGCAATTACCCGAGCGTCCGATAATGAGGTTCCTGGTTTGAATGGCCTTGGCATTTCAATGGCTCGTATAGACTTGGCAGCCGGTGGGGTTGTCCCCTTGCATACACACCCCGGGAGCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

85

Amino Acids

8.78

Weight (kDa)

5.55

Isoelectric Point (pI)

34.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	35 - 84	6.9e-10	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18180 AT2G18180 AT2G18180 AT2G18180 AT2G18180 AT4G36490
fragaria_vesca	FvH4_1g03070 FvH4_1g12640
malus_domestica	MD02G1140800.v1.1 MD15G1253600.v1.1
prunus_persica	Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G244900_v2.0.a1
pyrus_communis	pycom02g11090 pycom15g22320
rosa_chinensis	RchiOBHm_Chr2g0088201 RchiOBHm_Chr2g0100591 RchiOBHm_Chr2g0100601
rosa_laevigata	RLG00000015931
rosa_multiflora	Rmu_sc0001497.1_g000001 Rmu_sc0003275.1_g000070
rosa_roxburghii	Rroxscaffold_2G00142100 Rroxscaffold_7G00200090
rosa_rugosa	Rorug01G0481700 Rorug02G0089800 Rorug02G0089900 Rorug02G0090000 Rorug02G0090100 Rorug06G0039000 Rorug06G0389100
rosa_samantha	Rh2AG036800 Rh2AG139000 Rh2BG036000 Rh2BG142300 Rh2CG037100 Rh2CG144600 Rh2DG036500 Rh2DG144000
rosa_wichuraiana	Rw2G002900 Rw2G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	175, 192
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	2 cut(s)	20, 35
AluI	AGCT	2 cut(s)	20, 35
Alw21I	GWGCWC	1 cut(s)	37
Ama87I	CYCGRG	2 cut(s)	144, 245
AoxI	GGCC	2 cut(s)	68, 178
ApeKI	GCWGC	1 cut(s)	212
AspA2I	CCTAGG	1 cut(s)	97
AsuC2I	CCSGG	2 cut(s)	246, 247
AvaI	CYCGRG	2 cut(s)	144, 245
AvrII	CCTAGG	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	1 cut(s)	224
BciT130I	CCWGG	1 cut(s)	168
BcnI	CCSGG	2 cut(s)	246, 247
BfaI	CTAG	2 cut(s)	42, 98
BfmI	CTRYAG	2 cut(s)	28, 48
BisI	GCNGC	1 cut(s)	213
BlnI	CCTAGG	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	214
Bme1390I	CCNGG	3 cut(s)	168, 246, 247
BmeT110I	CYCGRG	2 cut(s)	144, 245
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	3 cut(s)	168, 246, 247
BpuMI	CCSGG	2 cut(s)	246, 247
BsaJI	CCNNGG	4 cut(s)	97, 181, 244, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse118I	RCCGGY	1 cut(s)	215
Bse3DI	GCAATG	2 cut(s)	102, 123
BseBI	CCWGG	1 cut(s)	168
BseDI	CCNNGG	4 cut(s)	97, 181, 244, 245
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMI	GCAATG	2 cut(s)	102, 123
BseXI	GCAGC	1 cut(s)	224
BshFI	GGCC	2 cut(s)	70, 180
BsiHKAI	GWGCWC	1 cut(s)	37
BsiHKCI	CYCGRG	2 cut(s)	144, 245
BsiSI	CCGG	2 cut(s)	216, 246
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	2 cut(s)	70, 180
BsoBI	CYCGRG	2 cut(s)	144, 245
Bsp1286I	GDGCHC	1 cut(s)	37
BspANI	GGCC	2 cut(s)	70, 180
BspLI	GGNNCC	1 cut(s)	165
BspMAI	CTGCAG	1 cut(s)	52
BsrDI	GCAATG	2 cut(s)	102, 123
BsrFI	RCCGGY	1 cut(s)	215
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	4 cut(s)	97, 181, 244, 245
BssT1I	CCWWGG	2 cut(s)	97, 181
Bst2UI	CCWGG	1 cut(s)	168
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	52
BstENI	CCTNNNNNAGG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 134
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	3 cut(s)	166, 244, 245
BstSFI	CTRYAG	2 cut(s)	28, 48
BstV1I	GCAGC	1 cut(s)	224
BsuRI	GGCC	2 cut(s)	70, 180
Cac8I	GCNNGC	1 cut(s)	52
Cfr10I	RCCGGY	1 cut(s)	215
Cfr9I	CCCGGG	1 cut(s)	245
CseI	GACGC	1 cut(s)	138
CviJI	RGCY	7 cut(s)	20, 35, 54, 70, 180, 197, 215
CviKI_1	RGCY	7 cut(s)	20, 35, 54, 70, 180, 197, 215
Ecl136II	GAGCTC	1 cut(s)	35
Eco130I	CCWWGG	2 cut(s)	97, 181
Eco147I	AGGCCT	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	37
Eco53kI	GAGCTC	1 cut(s)	35
Eco88I	CYCGRG	2 cut(s)	144, 245
EcoICRI	GAGCTC	1 cut(s)	35
EcoNI	CCTNNNNNAGG	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	166
EcoT14I	CCWWGG	2 cut(s)	97, 181
EcoT38I	GRGCYC	1 cut(s)	37
ErhI	CCWWGG	2 cut(s)	97, 181
FaiI	YATR	3 cut(s)	13, 203, 237
FaqI	GGGAC	1 cut(s)	212
Fnu4HI	GCNGC	1 cut(s)	213
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	1 cut(s)	213
FspBI	CTAG	2 cut(s)	42, 98
GluI	GCNGC	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	70, 180
HapII	CCGG	2 cut(s)	216, 246
HgaI	GACGC	1 cut(s)	138
HpaII	CCGG	2 cut(s)	216, 246
Hpy188I	TCNGA	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	48
HpyCH4V	TGCA	5 cut(s)	50, 63, 128, 137, 235
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 134
LmnI	GCTCC	2 cut(s)	40, 249
LpnPI	CCDG	8 cut(s)	36, 60, 73, 84, 93, 153, 180, 229
Lsp1109I	GCAGC	1 cut(s)	224
MaeI	CTAG	2 cut(s)	42, 98
MaeIII	GTNAC	1 cut(s)	110
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	1 cut(s)	138
MnlI	CCTC	3 cut(s)	125, 127, 154
MslI	CAYNNNNRTG	1 cut(s)	191
MspI	CCGG	2 cut(s)	216, 246
MspR9I	CCNGG	3 cut(s)	168, 246, 247
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	60, 134
NciI	CCSGG	2 cut(s)	246, 247
NlaIV	GGNNCC	1 cut(s)	165
PceI	AGGCCT	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	37
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	1 cut(s)	165
PstI	CTGCAG	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	191
SacI	GAGCTC	1 cut(s)	37
SatI	GCNGC	1 cut(s)	213
SbfI	CCTGCAGG	1 cut(s)	52
ScrFI	CCNGG	3 cut(s)	168, 246, 247
SdaI	CCTGCAGG	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	6 cut(s)	12, 22, 37, 119, 136, 165
SfcI	CTRYAG	2 cut(s)	28, 48
SmaI	CCCGGG	1 cut(s)	247
SmiMI	CAYNNNNRTG	1 cut(s)	191
Sse8387I	CCTGCAGG	1 cut(s)	52
Sse9I	AATT	1 cut(s)	138
SseBI	AGGCCT	1 cut(s)	70
SspMI	CTAG	2 cut(s)	42, 98
SstI	GAGCTC	1 cut(s)	37
StuI	AGGCCT	1 cut(s)	70
StyD4I	CCNGG	3 cut(s)	166, 244, 245
StyI	CCWWGG	2 cut(s)	97, 181
TasI	AATT	1 cut(s)	138
TseI	GCWGC	1 cut(s)	212
TspMI	CCCGGG	1 cut(s)	245
XagI	CCTNNNNNAGG	1 cut(s)	64
XmaI	CCCGGG	1 cut(s)	245
XmaJI	CCTAGG	1 cut(s)	97
XspI	CTAG	2 cut(s)	42, 98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.