Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001777

Physical Location & Seq

Genomic Coordinates Forward (+)

47393537 .. 47396573

Gene Structure 3037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00200090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGATTCATTTGCCTTCAGTGAGATTGGAACTTATCACTTGCCTTCAGACGATTGATAGCAACAACTATCCTGAGACTTTGAATCGTATGTTTATCACCAATGCTGGTTCTGGTTTTAGAATGTTGTGGAGCACTATGAAGTCCTTCCTTGATCCCAAGACCACTGAAAAGATTAATGTCAGTATACCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

64

Amino Acids

7.36

Weight (kDa)

7.94

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	9 - 60	2.6e-12	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18180 AT2G18180 AT2G18180 AT2G18180 AT2G18180 AT4G36490
fragaria_vesca	FvH4_1g03070 FvH4_1g12640
malus_domestica	MD02G1140800.v1.1 MD15G1253600.v1.1
prunus_persica	Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G244900_v2.0.a1
pyrus_communis	pycom02g11090 pycom15g22320
rosa_chinensis	RchiOBHm_Chr2g0088201 RchiOBHm_Chr2g0100591 RchiOBHm_Chr2g0100601
rosa_laevigata	RLG00000015931
rosa_multiflora	Rmu_sc0001497.1_g000001 Rmu_sc0003275.1_g000070
rosa_roxburghii	Rroxscaffold_2G00142100 Rroxscaffold_7G00200090
rosa_rugosa	Rorug01G0481700 Rorug02G0089800 Rorug02G0089900 Rorug02G0090000 Rorug02G0090100 Rorug06G0039000 Rorug06G0389100
rosa_samantha	Rh2AG036800 Rh2AG139000 Rh2BG036000 Rh2BG142300 Rh2CG037100 Rh2CG144600 Rh2DG036500 Rh2DG144000
rosa_wichuraiana	Rw2G002900 Rw2G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	184
AclWI	GGATC	1 cut(s)	146
AcuI	CTGAAG	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	82
Alw21I	GWGCWC	1 cut(s)	134
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	1 cut(s)	146
AseI	ATTAAT	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	1 cut(s)	151
BspCNI	CTCAG	1 cut(s)	64
BspPI	GGATC	1 cut(s)	146
BssMI	GATC	1 cut(s)	151
BssNAI	GTATAC	1 cut(s)	185
Bst1107I	GTATAC	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	72
BstKTI	GATC	1 cut(s)	154
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	151
BstZ17I	GTATAC	1 cut(s)	185
BtsIMutI	CAGTG	2 cut(s)	24, 162
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	29
FaiI	YATR	3 cut(s)	89, 137, 185
FblI	GTMKAC	1 cut(s)	184
HinfI	GANTC	2 cut(s)	4, 82
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	1 cut(s)	48
Hpy188III	TCNNGA	1 cut(s)	71
Hpy8I	GTNNAC	1 cut(s)	185
HpyAV	CCTTC	3 cut(s)	24, 53, 154
HpyF3I	CTNAG	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	129
LpnPI	CCDG	3 cut(s)	84, 90, 96
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	143
MseI	TTAA	1 cut(s)	174
NdeII	GATC	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	4, 82
PshBI	ATTAAT	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	174
Sau3AI	GATC	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	1 cut(s)	190
SgeI	CNNG	6 cut(s)	51, 83, 117, 123, 161, 169
TfiI	GAWTC	2 cut(s)	4, 82
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	2 cut(s)	24, 169
TspDTI	ATGAA	1 cut(s)	152
TspRI	CASTG	2 cut(s)	24, 169
VspI	ATTAAT	1 cut(s)	174
XmiI	GTMKAC	1 cut(s)	184
XmnI	GAANNNNTTC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.