Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001777

Physical Location & Seq

Genomic Coordinates Reverse (-)

12496142 .. 12498360

Gene Structure 2219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47523

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGTCGAAATCTCTGAGGAAGAGAGAAAGACTAGGATTGGGTCATTGAAGAAGAAAGCATTGACTGCTTCTGCCAGATTCAGAAACTCTTTCACAAGAAAGCATAGGAGAAGCCAGAGTAGAGTCTTGTCTGTAGAAATCGAGGATGTGCATGACCTTGAGGAGATAAAGGCTGTTGATTCGCTTCGTCAGGCACTTATAGCGGAGGACCTTCTTCCTCCCAAACACGATGATTATCATAAGATGCTGAGATTCTTGAAGGCCAGGAGATTTGATATCGAGAAGACCAAGCATATGTGGTCCGAGATGCTCGAGTGGAGGAAGACATTTGGTGCTGACACAATAATGGAGGATTTTGAGTTCAAGGAACTCGATGAAGTCTTGCAATACTATCCTCAAGGACATCATGGAGTTGACAAGGATGGACGACCTGTGTATATTGAGAGAATAGGCCTAGTAGATGTAACCAAGCTGATGCAAACCACTACAATAGACCGCTATGTGAAATACCATGTCCGCGAGTTTGAAAGGACATTTGATGTTAAGTTCCCAGCTTGTTCAATAGCAGCAAAGAAGCACATTGATCAAAGTACAACTATTTTGGATGTGCAAGGAGTGGGACTTAAAAACTTCAATAAAGCTGCCAGGGAACTTATCACTTGCCTTCAGACGATTGATAGCAACAACTATCCTGAGACCTTGAATCGTATGTTTATCATCAATGCTGGTTCTGGTTTTAGAATGTTGTGGAGCACTGTGAAGTCCTTCCTTGATCCCAAGACAACTGAAAAGATTAATGTCCTTGGTAACAAGAGCAAGTTACTTGAAATAATTGATGCTAGTGAGTTGCCAGAATTTTTAGGAGGTACATGTACTTGTGCTGATCAAGGAGGCTGTTTGCGTTCTGATAAGGGCCCCTGGAAGGACCAAATGATAATGACGATGGTCCAGAATGGTGTTCATGAATGTGCAAGGAAACCTACCGTTCCAATAAGTGAGATGAAGATGATACCAGAGGTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

341

Amino Acids

39.36

Weight (kDa)

8.39

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	129 - 289	2.2e-31	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	199 - 291	7.9e-07	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18180 AT2G18180 AT2G18180 AT2G18180 AT2G18180 AT4G36490
fragaria_vesca	FvH4_1g03070 FvH4_1g12640
malus_domestica	MD02G1140800.v1.1 MD15G1253600.v1.1
prunus_persica	Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G244900_v2.0.a1
pyrus_communis	pycom02g11090 pycom15g22320
rosa_chinensis	RchiOBHm_Chr2g0088201 RchiOBHm_Chr2g0100591 RchiOBHm_Chr2g0100601
rosa_laevigata	RLG00000015931
rosa_multiflora	Rmu_sc0001497.1_g000001 Rmu_sc0003275.1_g000070
rosa_roxburghii	Rroxscaffold_2G00142100 Rroxscaffold_7G00200090
rosa_rugosa	Rorug01G0481700 Rorug02G0089800 Rorug02G0089900 Rorug02G0090000 Rorug02G0090100 Rorug06G0039000 Rorug06G0389100
rosa_samantha	Rh2AG036800 Rh2AG139000 Rh2BG036000 Rh2BG142300 Rh2CG037100 Rh2CG144600 Rh2DG036500 Rh2DG144000
rosa_wichuraiana	Rw2G002900 Rw2G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	519
AciI	CCGC	3 cut(s)	203, 496, 517
AclWI	GGATC	1 cut(s)	767
AcsI	RAATTY	1 cut(s)	854
AcuI	CTGAAG	1 cut(s)	650
AfaI	GTAC	3 cut(s)	592, 868, 874
AfiI	CCNNNNNNNGG	1 cut(s)	922
AflIII	ACRYGT	1 cut(s)	869
AgsI	TTSAA	8 cut(s)	49, 259, 364, 527, 561, 634, 703, 827
AjnI	CCWGG	3 cut(s)	263, 644, 917
AloI	GAACNNNNNNTCC	2 cut(s)	344, 376
AluBI	AGCT	3 cut(s)	472, 554, 641
AluI	AGCT	3 cut(s)	472, 554, 641
Alw21I	GWGCWC	1 cut(s)	755
Alw26I	GTCTC	1 cut(s)	689
AlwI	GGATC	1 cut(s)	767
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	3 cut(s)	261, 451, 913
ApaI	GGGCCC	1 cut(s)	917
ApeKI	GCWGC	2 cut(s)	566, 641
ApoI	RAATTY	1 cut(s)	854
AseI	ATTAAT	1 cut(s)	795
Asp700I	GAANNNNTTC	1 cut(s)	764
AspS9I	GGNCC	6 cut(s)	208, 300, 913, 914, 925, 946
AvaI	CYCGRG	1 cut(s)	311
AvaII	GGWCC	4 cut(s)	208, 300, 925, 946
BaeGI	GKGCMC	1 cut(s)	917
BanII	GRGCYC	1 cut(s)	917
BbsI	GAAGAC	2 cut(s)	290, 329
Bbv12I	GWGCWC	1 cut(s)	755
BbvI	GCAGC	2 cut(s)	578, 628
BccI	CCATC	2 cut(s)	416, 937
BciT130I	CCWGG	3 cut(s)	265, 646, 919
BclI	TGATCA	2 cut(s)	583, 883
BcoDI	GTCTC	1 cut(s)	689
BfaI	CTAG	3 cut(s)	33, 455, 840
BfmI	CTRYAG	1 cut(s)	132
BisI	GCNGC	2 cut(s)	567, 642
BlsI	GCNGC	2 cut(s)	568, 643
Bme1390I	CCNGG	3 cut(s)	265, 646, 919
Bme18I	GGWCC	4 cut(s)	208, 300, 925, 946
BmeT110I	CYCGRG	1 cut(s)	311
BmgT120I	GGNCC	6 cut(s)	208, 300, 913, 914, 925, 946
BmiI	GGNNCC	2 cut(s)	915, 916
BmrFI	CCNGG	3 cut(s)	265, 646, 919
BmsI	GCATC	4 cut(s)	234, 297, 465, 826
BoxI	GACNNNNGTC	1 cut(s)	944
BpiI	GAAGAC	2 cut(s)	290, 329
BpuEI	CTTGAG	2 cut(s)	179, 381
BsaBI	GATNNNNATC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	689
BsaJI	CCNNGG	3 cut(s)	645, 802, 917
Bsc4I	CCNNNNNNNGG	1 cut(s)	922
Bse8I	GATNNNNATC	1 cut(s)	234
BseBI	CCWGG	3 cut(s)	265, 646, 919
BseDI	CCNNGG	3 cut(s)	645, 802, 917
BseGI	GGATG	3 cut(s)	151, 427, 610
BseJI	GATNNNNATC	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	922
BseMII	CTCAG	3 cut(s)	6, 239, 684
BseRI	GAGGAG	1 cut(s)	176
BseSI	GKGCMC	1 cut(s)	917
BseXI	GCAGC	2 cut(s)	578, 628
BseYI	CCCAGC	1 cut(s)	550
Bsh1236I	CGCG	1 cut(s)	519
BshFI	GGCC	3 cut(s)	263, 453, 915
BsiHKAI	GWGCWC	1 cut(s)	755
BsiHKCI	CYCGRG	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	633
BslI	CCNNNNNNNGG	1 cut(s)	922
BsmAI	GTCTC	1 cut(s)	689
BsmFI	GGGAC	1 cut(s)	633
BsnI	GGCC	3 cut(s)	263, 453, 915
Bso31I	GGTCTC	1 cut(s)	689
BsoBI	CYCGRG	1 cut(s)	311
Bsp120I	GGGCCC	1 cut(s)	913
Bsp1286I	GDGCHC	2 cut(s)	755, 917
Bsp143I	GATC	3 cut(s)	583, 772, 883
BspACI	CCGC	3 cut(s)	203, 496, 517
BspANI	GGCC	3 cut(s)	263, 453, 915
BspCNI	CTCAG	3 cut(s)	7, 240, 685
BspFNI	CGCG	1 cut(s)	519
BspHI	TCATGA	1 cut(s)	961
BspLI	GGNNCC	2 cut(s)	915, 916
BspPI	GGATC	1 cut(s)	767
BspTNI	GGTCTC	1 cut(s)	689
BssECI	CCNNGG	3 cut(s)	645, 802, 917
BssMI	GATC	3 cut(s)	583, 772, 883
BssT1I	CCWWGG	1 cut(s)	802
Bst2UI	CCWGG	3 cut(s)	265, 646, 919
Bst4CI	ACNGT	2 cut(s)	757, 985
Bst6I	CTCTTC	1 cut(s)	15
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstDEI	CTNAG	3 cut(s)	15, 248, 693
BstF5I	GGATG	3 cut(s)	151, 427, 610
BstFNI	CGCG	1 cut(s)	519
BstKTI	GATC	3 cut(s)	586, 775, 886
BstMAI	GTCTC	1 cut(s)	689
BstMBI	GATC	3 cut(s)	583, 772, 883
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 200
BstNI	CCWGG	3 cut(s)	265, 646, 919
BstNSI	RCATGY	1 cut(s)	873
BstPAI	GACNNNNGTC	1 cut(s)	944
BstSCI	CCNGG	3 cut(s)	263, 644, 917
BstSFI	CTRYAG	1 cut(s)	132
BstSLI	GKGCMC	1 cut(s)	917
BstUI	CGCG	1 cut(s)	519
BstV1I	GCAGC	2 cut(s)	578, 628
BstV2I	GAAGAC	2 cut(s)	290, 329
BsuRI	GGCC	3 cut(s)	263, 453, 915
BtsCI	GGATG	3 cut(s)	151, 427, 610
BtsIMutI	CAGTG	1 cut(s)	753
CciI	TCATGA	1 cut(s)	961
Cfr13I	GGNCC	6 cut(s)	208, 300, 913, 914, 925, 946
Csp6I	GTAC	3 cut(s)	591, 867, 873
CviAII	CATG	5 cut(s)	152, 407, 512, 870, 962
CviJI	RGCY	9 cut(s)	114, 173, 263, 453, 472, 554, 641, 894, 915
CviKI_1	RGCY	9 cut(s)	114, 173, 263, 453, 472, 554, 641, 894, 915
CviQI	GTAC	3 cut(s)	591, 867, 873
DdeI	CTNAG	3 cut(s)	15, 248, 693
DpnI	GATC	3 cut(s)	585, 774, 885
DpnII	GATC	3 cut(s)	583, 772, 883
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	802
Eco147I	AGGCCT	1 cut(s)	453
Eco24I	GRGCYC	1 cut(s)	917
Eco31I	GGTCTC	1 cut(s)	689
Eco32I	GATATC	1 cut(s)	277
Eco47I	GGWCC	4 cut(s)	208, 300, 925, 946
Eco57I	CTGAAG	1 cut(s)	650
Eco88I	CYCGRG	1 cut(s)	311
EcoO109I	RGGNCCY	3 cut(s)	208, 913, 914
EcoRII	CCWGG	3 cut(s)	263, 644, 917
EcoRV	GATATC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	802
EcoT38I	GRGCYC	1 cut(s)	917
ErhI	CCWWGG	1 cut(s)	802
FaeI	CATG	5 cut(s)	155, 410, 515, 873, 965
FaqI	GGGAC	1 cut(s)	633
FatI	CATG	5 cut(s)	151, 406, 511, 869, 961
FauNDI	CATATG	1 cut(s)	294
FbaI	TGATCA	2 cut(s)	583, 883
Fnu4HI	GCNGC	2 cut(s)	567, 642
FokI	GGATG	3 cut(s)	158, 434, 617
FriOI	GRGCYC	1 cut(s)	917
Fsp4HI	GCNGC	2 cut(s)	567, 642
FspBI	CTAG	3 cut(s)	33, 455, 840
GluI	GCNGC	2 cut(s)	567, 642
GsaI	CCCAGC	1 cut(s)	554
HaeIII	GGCC	3 cut(s)	263, 453, 915
Hin1II	CATG	5 cut(s)	155, 410, 515, 873, 965
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	5 cut(s)	78, 123, 179, 252, 703
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	5 cut(s)	16, 83, 304, 669, 907
Hpy188III	TCNNGA	5 cut(s)	256, 280, 692, 949, 962
Hpy8I	GTNNAC	1 cut(s)	415
HpyAV	CCTTC	5 cut(s)	221, 253, 674, 775, 916
HpyCH4III	ACNGT	2 cut(s)	757, 985
HpyCH4V	TGCA	5 cut(s)	151, 385, 478, 610, 971
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 200
HpyF3I	CTNAG	3 cut(s)	15, 248, 693
Hsp92II	CATG	5 cut(s)	155, 410, 515, 873, 965
Ksp22I	TGATCA	2 cut(s)	583, 883
Kzo9I	GATC	3 cut(s)	583, 772, 883
LmnI	GCTCC	1 cut(s)	750
Lsp1109I	GCAGC	2 cut(s)	578, 628
LweI	GCATC	4 cut(s)	234, 297, 465, 826
MaeI	CTAG	3 cut(s)	33, 455, 840
MaeIII	GTNAC	3 cut(s)	463, 806, 819
MalI	GATC	3 cut(s)	585, 774, 885
MboI	GATC	3 cut(s)	583, 772, 883
MboII	GAAGA	7 cut(s)	32, 61, 64, 206, 295, 334, 1015
MhlI	GDGCHC	2 cut(s)	755, 917
MluCI	AATT	2 cut(s)	831, 854
MlyI	GAGTC	1 cut(s)	132
MroXI	GAANNNNTTC	1 cut(s)	764
MseI	TTAA	3 cut(s)	543, 624, 795
MslI	CAYNNNNRTG	2 cut(s)	344, 966
MspR9I	CCNGG	3 cut(s)	265, 646, 919
MvaI	CCWGG	3 cut(s)	265, 646, 919
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	2 cut(s)	65, 200
NdeI	CATATG	1 cut(s)	294
NdeII	GATC	3 cut(s)	583, 772, 883
NlaIII	CATG	5 cut(s)	155, 410, 515, 873, 965
NlaIV	GGNNCC	2 cut(s)	915, 916
NspI	RCATGY	1 cut(s)	873
PaeR7I	CTCGAG	1 cut(s)	311
PagI	TCATGA	1 cut(s)	961
PceI	AGGCCT	1 cut(s)	453
PciI	ACATGT	1 cut(s)	869
PdmI	GAANNNNTTC	1 cut(s)	764
PfeI	GAWTC	4 cut(s)	78, 179, 252, 703
PkrI	GCNGC	2 cut(s)	568, 643
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PpuMI	RGGWCCY	1 cut(s)	208
PscI	ACATGT	1 cut(s)	869
PshAI	GACNNNNGTC	1 cut(s)	944
PshBI	ATTAAT	1 cut(s)	795
Psp5II	RGGWCCY	1 cut(s)	208
Psp6I	CCWGG	3 cut(s)	263, 644, 917
PspFI	CCCAGC	1 cut(s)	550
PspGI	CCWGG	3 cut(s)	263, 644, 917
PspN4I	GGNNCC	2 cut(s)	915, 916
PspOMI	GGGCCC	1 cut(s)	913
PspPI	GGNCC	6 cut(s)	208, 300, 913, 914, 925, 946
PspPPI	RGGWCCY	1 cut(s)	208
PspXI	VCTCGAGB	1 cut(s)	311
RsaI	GTAC	3 cut(s)	592, 868, 874
RsaNI	GTAC	3 cut(s)	591, 867, 873
RseI	CAYNNNNRTG	2 cut(s)	344, 966
SaqAI	TTAA	3 cut(s)	543, 624, 795
SatI	GCNGC	2 cut(s)	567, 642
Sau3AI	GATC	3 cut(s)	583, 772, 883
Sau96I	GGNCC	6 cut(s)	208, 300, 913, 914, 925, 946
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	3 cut(s)	265, 646, 919
SduI	GDGCHC	2 cut(s)	755, 917
SfaNI	GCATC	4 cut(s)	234, 297, 465, 826
SfcI	CTRYAG	1 cut(s)	132
Sfr274I	CTCGAG	1 cut(s)	311
SinI	GGWCC	4 cut(s)	208, 300, 925, 946
SlaI	CTCGAG	1 cut(s)	311
SmiMI	CAYNNNNRTG	2 cut(s)	344, 966
SmlI	CTYRAG	3 cut(s)	158, 311, 396
SmoI	CTYRAG	3 cut(s)	158, 311, 396
Sse9I	AATT	2 cut(s)	831, 854
SseBI	AGGCCT	1 cut(s)	453
SsiI	CCGC	3 cut(s)	203, 496, 517
SspMI	CTAG	3 cut(s)	33, 455, 840
StuI	AGGCCT	1 cut(s)	453
StyD4I	CCNGG	3 cut(s)	263, 644, 917
StyI	CCWWGG	1 cut(s)	802
TaaI	ACNGT	2 cut(s)	757, 985
TaqI	TCGA	5 cut(s)	6, 141, 279, 312, 372
TasI	AATT	2 cut(s)	831, 854
TatI	WGTACW	2 cut(s)	590, 872
TfiI	GAWTC	4 cut(s)	78, 179, 252, 703
Tru1I	TTAA	3 cut(s)	543, 624, 795
Tru9I	TTAA	3 cut(s)	543, 624, 795
TscAI	CASTG	1 cut(s)	760
TseI	GCWGC	2 cut(s)	566, 641
TspDTI	ATGAA	4 cut(s)	390, 950, 978, 1016
TspRI	CASTG	1 cut(s)	760
VpaK11BI	GGWCC	4 cut(s)	208, 300, 925, 946
VspI	ATTAAT	1 cut(s)	795
XapI	RAATTY	1 cut(s)	854
XceI	RCATGY	1 cut(s)	873
XhoI	CTCGAG	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	764
XspI	CTAG	3 cut(s)	33, 455, 840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.