Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001777

Physical Location & Seq

Genomic Coordinates Reverse (-)

7167190 .. 7167951

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0089800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTTTGTTATCCCTCAAGCGTTAATGCATTTATTTGTGAATATTGGAGGTGCTAAACCAGTCCTTGCATTTGCTAGCTACAGTAGTGCAACGCTACATATTCAGGGTGTGGACAATGCACTATTTGGAAGCAAATTTCGTACTCAATTGATAGCTAACACTACTTTCCTTGACATTTCTGAGATAAGGAAACTGAAGGCTGTCTTTGGTGGCACTAATTTAGGCATCGATCTCTTCACGATAAGGCTATTTTGGTGGCGGGGGGACACAACTCTTGCTTTGGGCCAGGAAGGCCGCATGCCCTGCTGGTGTGGGATATTGGGCTTGGATGCTGCTAGTGGGCCCGATCTGGGCTGGAGATGGGTTTGCGAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

125

Amino Acids

13.76

Weight (kDa)

7.75

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001777)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18180 AT2G18180 AT2G18180 AT2G18180 AT2G18180 AT4G36490
fragaria_vesca	FvH4_1g03070 FvH4_1g12640
malus_domestica	MD02G1140800.v1.1 MD15G1253600.v1.1
prunus_persica	Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G160200_v2.0.a1 Prupe.7G244900_v2.0.a1
pyrus_communis	pycom02g11090 pycom15g22320
rosa_chinensis	RchiOBHm_Chr2g0088201 RchiOBHm_Chr2g0100591 RchiOBHm_Chr2g0100601
rosa_laevigata	RLG00000015931
rosa_multiflora	Rmu_sc0001497.1_g000001 Rmu_sc0003275.1_g000070
rosa_roxburghii	Rroxscaffold_2G00142100 Rroxscaffold_7G00200090
rosa_rugosa	Rorug01G0481700 Rorug02G0089800 Rorug02G0089900 Rorug02G0090000 Rorug02G0090100 Rorug06G0039000 Rorug06G0389100
rosa_samantha	Rh2AG036800 Rh2AG139000 Rh2BG036000 Rh2BG142300 Rh2CG037100 Rh2CG144600 Rh2DG036500 Rh2DG144000
rosa_wichuraiana	Rw2G002900 Rw2G010890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	259, 295
AcsI	RAATTY	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	215
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	350
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	2 cut(s)	78, 155
AluI	AGCT	2 cut(s)	78, 155
AoxI	GGCC	3 cut(s)	283, 292, 341
ApaI	GGGCCC	1 cut(s)	345
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	134
AspS9I	GGNCC	3 cut(s)	283, 341, 342
AsuNHI	GCTAGC	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	345
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	1 cut(s)	354
BciT130I	CCWGG	1 cut(s)	287
BfaI	CTAG	2 cut(s)	75, 336
BfmI	CTRYAG	1 cut(s)	79
BglI	GCCNNNNNGGC	1 cut(s)	291
BisI	GCNGC	2 cut(s)	295, 333
BlsI	GCNGC	2 cut(s)	296, 334
Bme1390I	CCNGG	1 cut(s)	287
BmgT120I	GGNCC	3 cut(s)	283, 341, 342
BmiI	GGNNCC	1 cut(s)	343
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	2 cut(s)	234, 319
BmtI	GCTAGC	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	376
Bsa29I	ATCGAT	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	287
BseCI	ATCGAT	1 cut(s)	228
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	59
BseSI	GKGCMC	1 cut(s)	345
BseXI	GCAGC	1 cut(s)	319
BshFI	GGCC	3 cut(s)	285, 294, 343
BshVI	ATCGAT	1 cut(s)	228
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	3 cut(s)	285, 294, 343
Bsp120I	GGGCCC	1 cut(s)	341
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	229, 346
BspACI	CCGC	2 cut(s)	259, 295
BspANI	GGCC	3 cut(s)	285, 294, 343
BspCNI	CTCAG	1 cut(s)	172
BspDI	ATCGAT	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	343
BspOI	GCTAGC	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	59
BssMI	GATC	2 cut(s)	229, 346
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	1 cut(s)	83
Bst6I	CTCTTC	1 cut(s)	239
BstAPI	GCANNNNNTGC	1 cut(s)	303
BstC8I	GCNNGC	3 cut(s)	76, 299, 371
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	334
BstKTI	GATC	2 cut(s)	232, 349
BstMBI	GATC	2 cut(s)	229, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	291, 303
BstNI	CCWGG	1 cut(s)	287
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	285
BstSFI	CTRYAG	1 cut(s)	79
BstSLI	GKGCMC	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	319
Bsu15I	ATCGAT	1 cut(s)	228
BsuRI	GGCC	3 cut(s)	285, 294, 343
BsuTUI	ATCGAT	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	334
Cac8I	GCNNGC	3 cut(s)	76, 299, 371
Cfr13I	GGNCC	3 cut(s)	283, 341, 342
ClaI	ATCGAT	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	1 cut(s)	298
CviJI	RGCY	9 cut(s)	78, 155, 200, 247, 285, 294, 324, 343, 354
CviKI_1	RGCY	9 cut(s)	78, 155, 200, 247, 285, 294, 324, 343, 354
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	2 cut(s)	231, 348
DpnII	GATC	2 cut(s)	229, 346
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	345
Eco57I	CTGAAG	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	345
FaeI	CATG	1 cut(s)	301
FaiI	YATR	2 cut(s)	99, 299
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	1 cut(s)	297
FauI	CCCGC	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	295, 333
FokI	GGATG	1 cut(s)	341
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	2 cut(s)	295, 333
FspBI	CTAG	2 cut(s)	75, 336
GluI	GCNGC	2 cut(s)	295, 333
GsuI	CTGGAG	1 cut(s)	376
HaeIII	GGCC	3 cut(s)	285, 294, 343
Hin1II	CATG	1 cut(s)	301
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	1 cut(s)	238
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	190, 284
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4V	TGCA	4 cut(s)	28, 68, 89, 119
HpyF10VI	GCNNNNNNNGC	2 cut(s)	291, 303
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	229, 346
LpnPI	CCDG	8 cut(s)	72, 89, 272, 292, 299, 316, 335, 340
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	2 cut(s)	234, 319
MaeI	CTAG	2 cut(s)	75, 336
MalI	GATC	2 cut(s)	231, 348
MboI	GATC	2 cut(s)	229, 346
MboII	GAAGA	1 cut(s)	226
MfeI	CAATTG	1 cut(s)	146
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	3 cut(s)	134, 146, 217
MnlI	CCTC	2 cut(s)	24, 41
Mph1103I	ATGCAT	1 cut(s)	30
MseI	TTAA	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	287
MunI	CAATTG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	2 cut(s)	291, 303
NdeII	GATC	2 cut(s)	229, 346
NheI	GCTAGC	1 cut(s)	74
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	1 cut(s)	343
NsiI	ATGCAT	1 cut(s)	30
NspI	RCATGY	1 cut(s)	301
PaeI	GCATGC	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	296, 334
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	343
PspOMI	GGGCCC	1 cut(s)	341
PspPI	GGNCC	3 cut(s)	283, 341, 342
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	2 cut(s)	295, 333
Sau3AI	GATC	2 cut(s)	229, 346
Sau96I	GGNCC	3 cut(s)	283, 341, 342
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	345
SetI	ASST	3 cut(s)	52, 80, 157
SfaNI	GCATC	2 cut(s)	234, 319
SfcI	CTRYAG	1 cut(s)	79
SfiI	GGCCNNNNNGGCC	1 cut(s)	291
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
SphI	GCATGC	1 cut(s)	301
Sse9I	AATT	3 cut(s)	134, 146, 217
SsiI	CCGC	2 cut(s)	259, 295
SspI	AATATT	1 cut(s)	43
SspMI	CTAG	2 cut(s)	75, 336
StyD4I	CCNGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	83
TaqI	TCGA	1 cut(s)	228
TasI	AATT	3 cut(s)	134, 146, 217
TauI	GCSGC	1 cut(s)	297
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TseI	GCWGC	1 cut(s)	332
XapI	RAATTY	1 cut(s)	134
XceI	RCATGY	1 cut(s)	301
XspI	CTAG	2 cut(s)	75, 336
Zsp2I	ATGCAT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.