Rmu_sc0001497.1_g000001

phosphatidylinositol phosphatidylcholine transfer protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001497.1
Physical Location & Seq
Reverse (-)
4541 .. 8804
4264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001497.1_g000001.1.cds

Sequence Viewer

Length: 1410 bp
atgtctggacctcaatccacaaagcaagaggtcgaaatctctgaggaagagagaaagactaggattgggtcattgaagaagaaagcattgactgcttctgccagattcagaaactctttcacaagaaagcataggagaagccagagtagagtcttgtctgtagaaatcgaggatgtgcatgaacttgaggagataaaggctgttgattcgcttcgtcaggcacttatagcggaggagcttcttcctcccaaacacgatgattatcataagatgctgagattcttgaaggccaggagatttgatatcgagaagaccaagcatatgtggtccgagatgctcgagtggaggaagacatttggtgctgacacaataatggaggattttgagttcaaggaactcgatgaagtcttgcaatactatcctcaaggacatcatggagttgacaaggatggacgacctgtgtatattgagagaataggcctagtagatgtaaccaagctgatgcaaaccactacaatagaccgctatgtgaaataccatgtccgcgagtttgaaaggacatttgaggttaagttcccagcttgttcaatagcagcaaagaagcacattgatcaaagtacaactattttggatgtgcaaggagtgggacttaaaaacttcaataaagctgccagggaacttatcacttgccttcagacgattgatagcaacaactatcctgagaccttgaatcgtatgtttatcatcaatgctggttctggttttagaatgttgtggagcactgtgaagtccttccttgatcccaagacaactgaaaagattaatgtccttggtaacaagagcaagttacttgaaataattgatgctagtaaaagtatccaaggaactactttcaagtaccccccaactgcgggttcaacttggcaaatggcggttaagaatggcaaaggaggttgttatgatgctcccaaagtttatgatggattcagctctcagatttgtgctgctatcatggcatttcttatgtggattgtcactatggtcaaactaacccgtaacatgccaaagaggctcactgattccaccttctactcaagcactgtttacggtgatgacacagcgttcaaaaaccagccttcacgctctaccatctccagtacagagctcatgtctgtcataaaacgtatggctgaattggaagagagagttaaaccacctgccaggccaagtgagaaggagaaacttctgaatgctgctatgggccgagttgatgccttggagcatgagcttatggcaacaaagaaggctcttcgtgagtcacttgcccgacaagacgagatcttgggacctaagaaaaacaagaagaacaagaagaagaaaatgatgaaatttatgtgctatcatggttga

Protein Analysis

469

Amino Acids

53.9

Weight (kDa)

9.46

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1225
Acc36I ACCTGC 1 cut(s) 1225
AccII CGCG 1 cut(s) 546
AciI CCGC 5 cut(s) 230, 523, 544, 911, 932
AclWI GGATC 1 cut(s) 794
AcsI RAATTY 1 cut(s) 1388
AcuI CTGAAG 1 cut(s) 677
AfaI GTAC 3 cut(s) 619, 899, 1159
AfiI CCNNNNNNNGG 2 cut(s) 910, 911
AjnI CCWGG 3 cut(s) 290, 671, 1220
AjuI GAANNNNNNNTTGG 2 cut(s) 898, 930
AloI GAACNNNNNNTCC 2 cut(s) 371, 403
AluBI AGCT 7 cut(s) 238, 499, 581, 668, 990, 1165, 1288
AluI AGCT 7 cut(s) 238, 499, 581, 668, 990, 1165, 1288
Alw21I GWGCWC 2 cut(s) 782, 1167
Alw26I GTCTC 1 cut(s) 716
AlwI GGATC 1 cut(s) 794
Ama87I CYCGRG 1 cut(s) 338
AoxI GGCC 4 cut(s) 288, 478, 1223, 1261
ApeKI GCWGC 4 cut(s) 593, 668, 1004, 1253
ApoI RAATTY 1 cut(s) 1388
AseI ATTAAT 1 cut(s) 822
Asp700I GAANNNNTTC 1 cut(s) 791
AspS9I GGNCC 4 cut(s) 8, 327, 1261, 1346
AsuHPI GGTGA 1 cut(s) 1121
AvaI CYCGRG 1 cut(s) 338
AvaII GGWCC 3 cut(s) 8, 327, 1346
BanII GRGCYC 1 cut(s) 1167
BbsI GAAGAC 2 cut(s) 317, 356
Bbv12I GWGCWC 2 cut(s) 782, 1167
BbvI GCAGC 4 cut(s) 605, 655, 991, 1240
BccI CCATC 3 cut(s) 443, 974, 1157
BciT130I CCWGG 3 cut(s) 292, 673, 1222
BciVI GTATCC 1 cut(s) 887
BclI TGATCA 1 cut(s) 610
BcoDI GTCTC 1 cut(s) 716
BfaI CTAG 3 cut(s) 60, 482, 867
BfmI CTRYAG 1 cut(s) 159
BfuAI ACCTGC 1 cut(s) 1225
BfuI GTATCC 1 cut(s) 887
BglI GCCNNNNNGGC 1 cut(s) 1069
BglII AGATCT 1 cut(s) 1338
BisI GCNGC 4 cut(s) 594, 669, 1005, 1254
BlsI GCNGC 4 cut(s) 595, 670, 1006, 1255
Bme1390I CCNGG 3 cut(s) 292, 673, 1222
Bme18I GGWCC 3 cut(s) 8, 327, 1346
BmeT110I CYCGRG 1 cut(s) 338
BmgT120I GGNCC 4 cut(s) 8, 327, 1261, 1346
BmiI GGNNCC 1 cut(s) 1347
BmrFI CCNGG 3 cut(s) 292, 673, 1222
BmsI GCATC 6 cut(s) 261, 324, 492, 853, 952, 1261
BpiI GAAGAC 2 cut(s) 317, 356
BpmI CTGGAG 1 cut(s) 1138
BpuEI CTTGAG 3 cut(s) 206, 408, 1078
BsaBI GATNNNNATC 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 716
BsaJI CCNNGG 4 cut(s) 672, 829, 880, 1275
Bsc4I CCNNNNNNNGG 2 cut(s) 910, 911
Bse1I ACTGG 1 cut(s) 1155
Bse8I GATNNNNATC 1 cut(s) 261
BseBI CCWGG 3 cut(s) 292, 673, 1222
BseDI CCNNGG 4 cut(s) 672, 829, 880, 1275
BseGI GGATG 3 cut(s) 178, 454, 637
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 2 cut(s) 910, 911
BseMII CTCAG 4 cut(s) 33, 266, 711, 1007
BseNI ACTGG 1 cut(s) 1155
BseRI GAGGAG 2 cut(s) 203, 248
BseXI GCAGC 4 cut(s) 605, 655, 991, 1240
BseYI CCCAGC 1 cut(s) 577
Bsh1236I CGCG 1 cut(s) 546
BshFI GGCC 4 cut(s) 290, 480, 1225, 1263
BsiHKAI GWGCWC 2 cut(s) 782, 1167
BsiHKCI CYCGRG 1 cut(s) 338
BslFI GGGAC 2 cut(s) 660, 1359
BslI CCNNNNNNNGG 2 cut(s) 910, 911
BsmAI GTCTC 1 cut(s) 716
BsmFI GGGAC 2 cut(s) 660, 1359
BsmI GAATGC 1 cut(s) 1255
BsnI GGCC 4 cut(s) 290, 480, 1225, 1263
Bso31I GGTCTC 1 cut(s) 716
BsoBI CYCGRG 1 cut(s) 338
Bsp1286I GDGCHC 2 cut(s) 782, 1167
Bsp143I GATC 3 cut(s) 610, 799, 1338
BspACI CCGC 5 cut(s) 230, 523, 544, 911, 932
BspANI GGCC 4 cut(s) 290, 480, 1225, 1263
BspCNI CTCAG 4 cut(s) 34, 267, 712, 1006
BspFNI CGCG 1 cut(s) 546
BspLI GGNNCC 1 cut(s) 1347
BspMI ACCTGC 1 cut(s) 1225
BspPI GGATC 1 cut(s) 794
BspQI GCTCTTC 1 cut(s) 1314
BspTNI GGTCTC 1 cut(s) 716
BsrI ACTGG 1 cut(s) 1155
BssECI CCNNGG 4 cut(s) 672, 829, 880, 1275
BssMI GATC 3 cut(s) 610, 799, 1338
BssT1I CCWWGG 3 cut(s) 829, 880, 1275
Bst2UI CCWGG 3 cut(s) 292, 673, 1222
Bst4CI ACNGT 3 cut(s) 784, 1102, 1109
Bst6I CTCTTC 3 cut(s) 42, 1194, 1314
BstAPI GCANNNNNTGC 1 cut(s) 92
BstDEI CTNAG 5 cut(s) 42, 275, 720, 993, 1350
BstF5I GGATG 3 cut(s) 178, 454, 637
BstFNI CGCG 1 cut(s) 546
BstKTI GATC 3 cut(s) 613, 802, 1341
BstMAI GTCTC 1 cut(s) 716
BstMBI GATC 3 cut(s) 610, 799, 1338
BstMWI GCNNNNNNNGC 4 cut(s) 92, 227, 1013, 1069
BstNI CCWGG 3 cut(s) 292, 673, 1222
BstNSI RCATGY 1 cut(s) 1063
BstSCI CCNGG 3 cut(s) 290, 671, 1220
BstSFI CTRYAG 1 cut(s) 159
BstUI CGCG 1 cut(s) 546
BstV1I GCAGC 4 cut(s) 605, 655, 991, 1240
BstV2I GAAGAC 2 cut(s) 317, 356
BstX2I RGATCY 1 cut(s) 1338
BstYI RGATCY 1 cut(s) 1338
BsuI GTATCC 1 cut(s) 887
BsuRI GGCC 4 cut(s) 290, 480, 1225, 1263
BtsCI GGATG 3 cut(s) 178, 454, 637
BtsIMutI CAGTG 3 cut(s) 780, 1074, 1098
BveI ACCTGC 1 cut(s) 1225
Cfr13I GGNCC 4 cut(s) 8, 327, 1261, 1346
Csp6I GTAC 3 cut(s) 618, 898, 1158
CviAII CATG 8 cut(s) 179, 434, 539, 1012, 1060, 1168, 1283, 1403
CviQI GTAC 3 cut(s) 618, 898, 1158
DdeI CTNAG 5 cut(s) 42, 275, 720, 993, 1350
DpnI GATC 3 cut(s) 612, 801, 1340
DpnII GATC 3 cut(s) 610, 799, 1338
Eam1104I CTCTTC 3 cut(s) 42, 1194, 1314
EarI CTCTTC 3 cut(s) 42, 1194, 1314
Ecl136II GAGCTC 1 cut(s) 1165
Eco130I CCWWGG 3 cut(s) 829, 880, 1275
Eco147I AGGCCT 1 cut(s) 480
Eco24I GRGCYC 1 cut(s) 1167
Eco31I GGTCTC 1 cut(s) 716
Eco32I GATATC 1 cut(s) 304
Eco47I GGWCC 3 cut(s) 8, 327, 1346
Eco53kI GAGCTC 1 cut(s) 1165
Eco57I CTGAAG 1 cut(s) 677
Eco88I CYCGRG 1 cut(s) 338
EcoICRI GAGCTC 1 cut(s) 1165
EcoO109I RGGNCCY 1 cut(s) 1346
EcoRII CCWGG 3 cut(s) 290, 671, 1220
EcoRV GATATC 1 cut(s) 304
EcoT14I CCWWGG 3 cut(s) 829, 880, 1275
EcoT38I GRGCYC 1 cut(s) 1167
ErhI CCWWGG 3 cut(s) 829, 880, 1275
FaeI CATG 8 cut(s) 182, 437, 542, 1015, 1063, 1171, 1286, 1406
FaqI GGGAC 2 cut(s) 660, 1359
FatI CATG 8 cut(s) 178, 433, 538, 1011, 1059, 1167, 1282, 1402
FauI CCCGC 1 cut(s) 904
FauNDI CATATG 1 cut(s) 321
FbaI TGATCA 1 cut(s) 610
Fnu4HI GCNGC 4 cut(s) 594, 669, 1005, 1254
FokI GGATG 3 cut(s) 185, 461, 644
FriOI GRGCYC 1 cut(s) 1167
Fsp4HI GCNGC 4 cut(s) 594, 669, 1005, 1254
FspBI CTAG 3 cut(s) 60, 482, 867
GluI GCNGC 4 cut(s) 594, 669, 1005, 1254
GsaI CCCAGC 1 cut(s) 581
GsuI CTGGAG 1 cut(s) 1138
HaeIII GGCC 4 cut(s) 290, 480, 1225, 1263
Hin1II CATG 8 cut(s) 182, 437, 542, 1015, 1063, 1171, 1286, 1406
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HinfI GANTC 8 cut(s) 105, 150, 206, 279, 730, 984, 1079, 1316
HphI GGTGA 1 cut(s) 1121
Hpy166II GTNNAC 2 cut(s) 442, 1105
Hpy188I TCNGA 6 cut(s) 43, 110, 331, 696, 996, 1248
Hpy188III TCNNGA 5 cut(s) 6, 283, 307, 719, 1313
Hpy8I GTNNAC 2 cut(s) 442, 1105
HpyAV CCTTC 7 cut(s) 280, 701, 802, 1096, 1146, 1228, 1297
HpyCH4III ACNGT 3 cut(s) 784, 1102, 1109
HpyCH4IV ACGT 1 cut(s) 1183
HpyCH4V TGCA 4 cut(s) 178, 412, 505, 637
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 227, 1013, 1069
HpyF3I CTNAG 5 cut(s) 42, 275, 720, 993, 1350
HpySE526I ACGT 1 cut(s) 1183
Hsp92II CATG 8 cut(s) 182, 437, 542, 1015, 1063, 1171, 1286, 1406
Ksp22I TGATCA 1 cut(s) 610
Kzo9I GATC 3 cut(s) 610, 799, 1338
LguI GCTCTTC 1 cut(s) 1314
LmnI GCTCC 4 cut(s) 235, 777, 970, 1279
Lsp1109I GCAGC 4 cut(s) 605, 655, 991, 1240
LweI GCATC 6 cut(s) 261, 324, 492, 853, 952, 1261
MaeI CTAG 3 cut(s) 60, 482, 867
MaeII ACGT 1 cut(s) 1183
MaeIII GTNAC 6 cut(s) 490, 833, 846, 1033, 1055, 1317
MalI GATC 3 cut(s) 612, 801, 1340
MboI GATC 3 cut(s) 610, 799, 1338
MflI RGATCY 1 cut(s) 1338
MhlI GDGCHC 2 cut(s) 782, 1167
MluCI AATT 3 cut(s) 858, 1193, 1388
MlyI GAGTC 2 cut(s) 159, 1325
MroXI GAANNNNTTC 1 cut(s) 791
MseI TTAA 5 cut(s) 570, 651, 822, 936, 1209
MslI CAYNNNNRTG 1 cut(s) 371
MspR9I CCNGG 3 cut(s) 292, 673, 1222
Mva1269I GAATGC 1 cut(s) 1255
MvaI CCWGG 3 cut(s) 292, 673, 1222
MvnI CGCG 1 cut(s) 546
MwoI GCNNNNNNNGC 4 cut(s) 92, 227, 1013, 1069
NdeI CATATG 1 cut(s) 321
NdeII GATC 3 cut(s) 610, 799, 1338
NlaIII CATG 8 cut(s) 182, 437, 542, 1015, 1063, 1171, 1286, 1406
NlaIV GGNNCC 1 cut(s) 1347
NmeAIII GCCGAG 1 cut(s) 1289
NmuCI GTSAC 2 cut(s) 1033, 1317
NspI RCATGY 1 cut(s) 1063
PaeR7I CTCGAG 1 cut(s) 338
PaqCI CACCTGC 1 cut(s) 1225
PceI AGGCCT 1 cut(s) 480
PciSI GCTCTTC 1 cut(s) 1314
PctI GAATGC 1 cut(s) 1255
PdmI GAANNNNTTC 1 cut(s) 791
PfeI GAWTC 6 cut(s) 105, 206, 279, 730, 984, 1079
PkrI GCNGC 4 cut(s) 595, 670, 1006, 1255
PleI GAGTC 2 cut(s) 158, 1324
PpsI GAGTC 2 cut(s) 158, 1324
PpuMI RGGWCCY 1 cut(s) 1346
PshBI ATTAAT 1 cut(s) 822
Psp124BI GAGCTC 1 cut(s) 1167
Psp5II RGGWCCY 1 cut(s) 1346
Psp6I CCWGG 3 cut(s) 290, 671, 1220
PspFI CCCAGC 1 cut(s) 577
PspGI CCWGG 3 cut(s) 290, 671, 1220
PspN4I GGNNCC 1 cut(s) 1347
PspPI GGNCC 4 cut(s) 8, 327, 1261, 1346
PspPPI RGGWCCY 1 cut(s) 1346
PspXI VCTCGAGB 1 cut(s) 338
PsuI RGATCY 1 cut(s) 1338
RsaI GTAC 3 cut(s) 619, 899, 1159
RsaNI GTAC 3 cut(s) 618, 898, 1158
RseI CAYNNNNRTG 1 cut(s) 371
SacI GAGCTC 1 cut(s) 1167
SapI GCTCTTC 1 cut(s) 1314
SaqAI TTAA 5 cut(s) 570, 651, 822, 936, 1209
SatI GCNGC 4 cut(s) 594, 669, 1005, 1254
Sau3AI GATC 3 cut(s) 610, 799, 1338
Sau96I GGNCC 4 cut(s) 8, 327, 1261, 1346
SchI GAGTC 2 cut(s) 159, 1325
ScrFI CCNGG 3 cut(s) 292, 673, 1222
SduI GDGCHC 2 cut(s) 782, 1167
SfaNI GCATC 6 cut(s) 261, 324, 492, 853, 952, 1261
SfcI CTRYAG 1 cut(s) 159
Sfr274I CTCGAG 1 cut(s) 338
SinI GGWCC 3 cut(s) 8, 327, 1346
SlaI CTCGAG 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 4 cut(s) 185, 338, 423, 1093
SmoI CTYRAG 4 cut(s) 185, 338, 423, 1093
Sse9I AATT 3 cut(s) 858, 1193, 1388
SseBI AGGCCT 1 cut(s) 480
SsiI CCGC 5 cut(s) 230, 523, 544, 911, 932
SspMI CTAG 3 cut(s) 60, 482, 867
SstI GAGCTC 1 cut(s) 1167
StuI AGGCCT 1 cut(s) 480
StyD4I CCNGG 3 cut(s) 290, 671, 1220
StyI CCWWGG 3 cut(s) 829, 880, 1275
TaaI ACNGT 3 cut(s) 784, 1102, 1109
TaiI ACGT 1 cut(s) 1186
TaqI TCGA 5 cut(s) 33, 168, 306, 339, 399
TasI AATT 3 cut(s) 858, 1193, 1388
TatI WGTACW 2 cut(s) 617, 1157
TfiI GAWTC 6 cut(s) 105, 206, 279, 730, 984, 1079
Tru1I TTAA 5 cut(s) 570, 651, 822, 936, 1209
Tru9I TTAA 5 cut(s) 570, 651, 822, 936, 1209
TscAI CASTG 3 cut(s) 787, 1081, 1105
TseFI GTSAC 2 cut(s) 1033, 1317
TseI GCWGC 4 cut(s) 593, 668, 1004, 1253
Tsp45I GTSAC 2 cut(s) 1033, 1317
TspDTI ATGAA 3 cut(s) 195, 417, 1400
TspRI CASTG 3 cut(s) 787, 1081, 1105
VpaK11BI GGWCC 3 cut(s) 8, 327, 1346
VspI ATTAAT 1 cut(s) 822
XapI RAATTY 1 cut(s) 1388
XceI RCATGY 1 cut(s) 1063
XhoI CTCGAG 1 cut(s) 338
XmnI GAANNNNTTC 1 cut(s) 791
XspI CTAG 3 cut(s) 60, 482, 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.