Rh2DG036400

Equilibrative nucleotide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0013473
Physical Location & Seq
Forward (+)
2500543 .. 2502212
1670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG036400.1

Sequence Viewer

Length: 1242 bp
ATGGTGCTATATAAGTTTCCAACCAAGAGTGACACAAACCAAGAGTTTCACAAAATGGAAAGTGGAGTAAAAGGTCTAGAATTCAAAGATGAGCCAAGAGATGCTTACAAGATTGCTTACGTTATTCACTTCTTGCTCGGCGCTGGCAATTTGCTTCCTTGGAATGCATTCATCACTGCTGTTGATTACTTTGGCTATCTCTATCCAACCAAGCATGTTGAGAAGGTCTTCTCCGTAGCTTACATGAGTTCTTCAGTGCTAGTTCTGGTTGTAATGATGACTTGGGGTTGCTGGTGGGAGAAAATGAGCCCTAGGCTCAGACTCAACTTGGGTTTTTTGATGTTTATTCTCTCGTTAACCGTGGCTCCTATCACAGATTGGGCTAGTTATCTCAGTACTAATGCAGCTTATGGTGTAACAGTTGCATCAGTTGTAATATGTGGCCTAGCTGATGGCTTGGTAGGTGGAAGCTTAATGGGATCAGCTGGAAAGCTTCCCAAAAAGTATATGCAGGCTGTTTTTGCTGGCACTGCTTCTTCAGGTGTTATAATTTGTGTCCTGAGAATTTCAACAAAGGCAATGGTTCCACAGACCCCAAAAGGACTTAAAACAAGTGCCCACTTATATTTTATTGTCAGCATCATTATACTCCTATGCAGCATCCTTTGTTCCAACTTGCTATACAAGCTGAGAGTCATGCAGGAACACTGCAAACTTGTTCAAGATCAATCCTTTTGCTGCTCATCAAGGCCGAAATTTTGGGCTGTGGCGCAAAAAGTTCCCGGGCCAGCTTTTGGGATCTTCTTAATCTATACAGTGACTCTGTCAATCTTTCCAGGATTTATAGCTGAAAATTTGGAATCCAAGCTTCTTCAAGATTGGTATCCCATTTTGCTTATCACAGTGTACAACTTTGCGGATTTAGTAGGTAAATTTTTGACTGCAGTGTACCTTCTGAAGAGTATCAAAAAGGCAACATGGGCTTGTGTTACCAGACTCTTATTCTATCCAATCTTCACTGCTTGCCTCCATGGACCAACATGGCTGAAAACTGAAGTTCCTATGATCTTCCTCACATTTATGCTTGGAATGTCCAATGGTTACCTCACAAGTGTCATCATGATGACAGTACCAAAACTAGTACCAGTTCCAGAAGCAGAACTATCTGCAATTGTAATGGTTGTGTTCCTTGGAGTCGGGTTGGTTAGTGGTTCGGTTCTAGGCTGGTTCTGGATTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleoside_tran

Protein Analysis

413

Amino Acids

45.87

Weight (kDa)

9.13

Isoelectric Point (pI)

29.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoside_tran PF01733 142 - 239 6.6e-20 Nucleoside transporter
Nucleoside_tran PF01733 252 - 411 2.7e-36 Nucleoside transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02630 AT1G02630
fragaria_vesca FvH4_1g03060
malus_domestica MD02G1029900.v1.1 MD15G1171300.v1.1
prunus_persica Prupe.7G245000_v2.0.a1
pyrus_communis pycom02g02490 pycom15g15290
rosa_chinensis RchiOBHm_Chr2g0088191
rosa_laevigata RLG00000015930
rosa_multiflora Rmu_sc0003275.1_g000069
rosa_roxburghii Rroxscaffold_2G00152840
rosa_rugosa Rorug01G0481700
rosa_samantha Rh2AG036700 Rh2BG035900 Rh2CG037000 Rh2DG036400
rosa_wichuraiana Rw2G002890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 548
AccB7I CCANNNNNTGG 1 cut(s) 794
AciI CCGC 1 cut(s) 917
AclWI GGATC 2 cut(s) 487, 806
AcsI RAATTY 5 cut(s) 80, 564, 755, 853, 932
AcuI CTGAAG 4 cut(s) 237, 522, 977, 1074
AfaI GTAC 5 cut(s) 397, 908, 950, 1131, 1143
AfiI CCNNNNNNNGG 1 cut(s) 794
AgsI TTSAA 4 cut(s) 85, 570, 722, 875
AhlI ACTAGT 1 cut(s) 1138
AjnI CCWGG 1 cut(s) 835
AlwI GGATC 2 cut(s) 487, 806
Ama87I CYCGRG 1 cut(s) 782
AoxI GGCC 3 cut(s) 442, 749, 785
ApeKI GCWGC 3 cut(s) 404, 657, 738
ApoI RAATTY 5 cut(s) 80, 564, 755, 853, 932
Asp700I GAANNNNTTC 2 cut(s) 167, 227
AspA2I CCTAGG 1 cut(s) 311
AspLEI GCGC 2 cut(s) 143, 772
AspS9I GGNCC 2 cut(s) 785, 1034
AsuC2I CCSGG 2 cut(s) 783, 784
AvaI CYCGRG 1 cut(s) 782
AvaII GGWCC 1 cut(s) 1034
AvrII CCTAGG 1 cut(s) 311
BaeGI GKGCMC 1 cut(s) 619
BanII GRGCYC 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 220
BbvI GCAGC 3 cut(s) 416, 669, 725
BccI CCATC 1 cut(s) 446
BciT130I CCWGG 1 cut(s) 837
BciVI GTATCC 1 cut(s) 894
BcnI CCSGG 2 cut(s) 783, 784
BcuI ACTAGT 1 cut(s) 1138
BfaI CTAG 7 cut(s) 77, 260, 312, 384, 446, 1139, 1220
BfmI CTRYAG 1 cut(s) 942
BfoI RGCGCY 1 cut(s) 144
BfuI GTATCC 1 cut(s) 894
BisI GCNGC 3 cut(s) 405, 658, 739
BlnI CCTAGG 1 cut(s) 311
BlsI GCNGC 3 cut(s) 406, 659, 740
BmcAI AGTACT 1 cut(s) 397
Bme1390I CCNGG 3 cut(s) 783, 784, 837
Bme18I GGWCC 1 cut(s) 1034
BmeT110I CYCGRG 1 cut(s) 782
BmgT120I GGNCC 2 cut(s) 785, 1034
BmiI GGNNCC 2 cut(s) 366, 585
BmrFI CCNGG 3 cut(s) 783, 784, 837
BmsI GCATC 4 cut(s) 91, 434, 648, 669
BpiI GAAGAC 1 cut(s) 220
BpuMI CCSGG 2 cut(s) 783, 784
BsaBI GATNNNNATC 1 cut(s) 882
BsaJI CCNNGG 6 cut(s) 158, 311, 360, 782, 1030, 1189
BsaXI ACNNNNNCTCC 2 cut(s) 349, 379
Bsc4I CCNNNNNNNGG 1 cut(s) 794
Bse1I ACTGG 1 cut(s) 1145
Bse3DI GCAATG 1 cut(s) 585
Bse8I GATNNNNATC 1 cut(s) 882
BseBI CCWGG 1 cut(s) 837
BseDI CCNNGG 6 cut(s) 158, 311, 360, 782, 1030, 1189
BseGI GGATG 1 cut(s) 660
BseJI GATNNNNATC 1 cut(s) 882
BseLI CCNNNNNNNGG 1 cut(s) 794
BseMI GCAATG 1 cut(s) 585
BseMII CTCAG 4 cut(s) 331, 406, 551, 680
BseNI ACTGG 1 cut(s) 1145
BseSI GKGCMC 1 cut(s) 619
BseXI GCAGC 3 cut(s) 416, 669, 725
BshFI GGCC 3 cut(s) 444, 751, 787
BsiHKCI CYCGRG 1 cut(s) 782
BsiSI CCGG 1 cut(s) 783
BslI CCNNNNNNNGG 1 cut(s) 794
BsmI GAATGC 2 cut(s) 167, 169
BsnI GGCC 3 cut(s) 444, 751, 787
BsoBI CYCGRG 1 cut(s) 782
Bsp1286I GDGCHC 2 cut(s) 311, 619
Bsp1407I TGTACA 1 cut(s) 906
Bsp143I GATC 4 cut(s) 479, 724, 798, 1065
Bsp19I CCATGG 1 cut(s) 1030
BspACI CCGC 1 cut(s) 917
BspANI GGCC 3 cut(s) 444, 751, 787
BspCNI CTCAG 4 cut(s) 330, 405, 552, 681
BspHI TCATGA 1 cut(s) 1119
BspLI GGNNCC 2 cut(s) 366, 585
BspMAI CTGCAG 1 cut(s) 946
BspPI GGATC 2 cut(s) 487, 806
BsrDI GCAATG 1 cut(s) 585
BsrGI TGTACA 1 cut(s) 906
BsrI ACTGG 1 cut(s) 1145
BssECI CCNNGG 6 cut(s) 158, 311, 360, 782, 1030, 1189
BssMI GATC 4 cut(s) 479, 724, 798, 1065
BssT1I CCWWGG 4 cut(s) 158, 311, 1030, 1189
Bst2UI CCWGG 1 cut(s) 837
Bst4CI ACNGT 5 cut(s) 361, 421, 817, 904, 1129
Bst6I CTCTTC 1 cut(s) 953
BstAUI TGTACA 1 cut(s) 906
BstC8I GCNNGC 5 cut(s) 145, 513, 526, 789, 1024
BstDEI CTNAG 4 cut(s) 317, 392, 560, 689
BstDSI CCRYGG 2 cut(s) 360, 1030
BstEII GGTNACC 1 cut(s) 1100
BstF5I GGATG 1 cut(s) 660
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 2 cut(s) 143, 772
BstKTI GATC 4 cut(s) 482, 727, 801, 1068
BstMBI GATC 4 cut(s) 479, 724, 798, 1065
BstMWI GCNNNNNNNGC 4 cut(s) 521, 530, 685, 980
BstNI CCWGG 1 cut(s) 837
BstNSI RCATGY 1 cut(s) 218
BstPI GGTNACC 1 cut(s) 1100
BstSCI CCNGG 3 cut(s) 781, 782, 835
BstSFI CTRYAG 1 cut(s) 942
BstSLI GKGCMC 1 cut(s) 619
BstV1I GCAGC 3 cut(s) 416, 669, 725
BstV2I GAAGAC 1 cut(s) 220
BstX2I RGATCY 1 cut(s) 798
BstYI RGATCY 1 cut(s) 798
BsuI GTATCC 1 cut(s) 894
BsuRI GGCC 3 cut(s) 444, 751, 787
BtgI CCRYGG 2 cut(s) 360, 1030
BtsCI GGATG 1 cut(s) 660
BtsI GCAGTG 5 cut(s) 174, 528, 706, 951, 1017
BtsIMutI CAGTG 8 cut(s) 174, 261, 528, 706, 822, 909, 951, 1017
Cac8I GCNNGC 5 cut(s) 145, 513, 526, 789, 1024
CciI TCATGA 1 cut(s) 1119
CfoI GCGC 2 cut(s) 143, 772
Cfr13I GGNCC 2 cut(s) 785, 1034
Cfr9I CCCGGG 1 cut(s) 782
Csp6I GTAC 5 cut(s) 396, 907, 949, 1130, 1142
CviAII CATG 7 cut(s) 215, 244, 697, 978, 1031, 1041, 1120
CviQI GTAC 5 cut(s) 396, 907, 949, 1130, 1142
DdeI CTNAG 4 cut(s) 317, 392, 560, 689
DpnI GATC 4 cut(s) 481, 726, 800, 1067
DpnII GATC 4 cut(s) 479, 724, 798, 1065
Eam1104I CTCTTC 1 cut(s) 953
EarI CTCTTC 1 cut(s) 953
Eco130I CCWWGG 4 cut(s) 158, 311, 1030, 1189
Eco24I GRGCYC 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 1034
Eco57I CTGAAG 4 cut(s) 237, 522, 977, 1074
Eco88I CYCGRG 1 cut(s) 782
Eco91I GGTNACC 1 cut(s) 1100
EcoO65I GGTNACC 1 cut(s) 1100
EcoRI GAATTC 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 835
EcoT14I CCWWGG 4 cut(s) 158, 311, 1030, 1189
EcoT22I ATGCAT 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 311
ErhI CCWWGG 4 cut(s) 158, 311, 1030, 1189
FaeI CATG 7 cut(s) 218, 247, 700, 981, 1034, 1044, 1123
FalI AAGNNNNNCTT 2 cut(s) 88, 120
FatI CATG 7 cut(s) 214, 243, 696, 977, 1030, 1040, 1119
Fnu4HI GCNGC 3 cut(s) 405, 658, 739
FokI GGATG 1 cut(s) 647
FriOI GRGCYC 1 cut(s) 311
Fsp4HI GCNGC 3 cut(s) 405, 658, 739
FspBI CTAG 7 cut(s) 77, 260, 312, 384, 446, 1139, 1220
GlaI GCGC 2 cut(s) 142, 771
GluI GCNGC 3 cut(s) 405, 658, 739
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 3 cut(s) 444, 751, 787
HapII CCGG 1 cut(s) 783
HhaI GCGC 2 cut(s) 143, 772
Hin1II CATG 7 cut(s) 218, 247, 700, 981, 1034, 1044, 1123
Hin6I GCGC 2 cut(s) 141, 770
HinP1I GCGC 2 cut(s) 141, 770
HincII GTYRAC 1 cut(s) 357
HindII GTYRAC 1 cut(s) 357
HindIII AAGCTT 3 cut(s) 469, 491, 866
HinfI GANTC 6 cut(s) 321, 693, 820, 860, 996, 1194
HpaI GTTAAC 1 cut(s) 357
HpaII CCGG 1 cut(s) 783
Hpy166II GTNNAC 3 cut(s) 357, 907, 949
Hpy188I TCNGA 2 cut(s) 320, 957
Hpy188III TCNNGA 7 cut(s) 77, 559, 722, 875, 1120, 1151, 1231
Hpy8I GTNNAC 3 cut(s) 357, 907, 949
HpyAV CCTTC 2 cut(s) 217, 962
HpyCH4III ACNGT 5 cut(s) 361, 421, 817, 904, 1129
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 9 cut(s) 167, 404, 425, 511, 657, 700, 711, 944, 1169
HpyF10VI GCNNNNNNNGC 4 cut(s) 521, 530, 685, 980
HpyF3I CTNAG 4 cut(s) 317, 392, 560, 689
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 7 cut(s) 218, 247, 700, 981, 1034, 1044, 1123
HspAI GCGC 2 cut(s) 141, 770
KspAI GTTAAC 1 cut(s) 357
Kzo9I GATC 4 cut(s) 479, 724, 798, 1065
LmnI GCTCC 1 cut(s) 370
Lsp1109I GCAGC 3 cut(s) 416, 669, 725
LweI GCATC 4 cut(s) 91, 434, 648, 669
MaeI CTAG 7 cut(s) 77, 260, 312, 384, 446, 1139, 1220
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 5 cut(s) 29, 415, 817, 988, 1100
MalI GATC 4 cut(s) 481, 726, 800, 1067
MboI GATC 4 cut(s) 479, 724, 798, 1065
MboII GAAGA 8 cut(s) 220, 243, 528, 793, 863, 970, 1006, 1060
MfeI CAATTG 1 cut(s) 1170
MflI RGATCY 1 cut(s) 798
MhlI GDGCHC 2 cut(s) 311, 619
MluCI AATT 8 cut(s) 80, 148, 549, 564, 755, 853, 932, 1170
MlyI GAGTC 5 cut(s) 315, 702, 814, 990, 1203
MmeI TCCRAC 3 cut(s) 44, 230, 696
MnlI CCTC 3 cut(s) 1037, 1082, 1115
Mph1103I ATGCAT 1 cut(s) 169
MroXI GAANNNNTTC 2 cut(s) 167, 227
MseI TTAA 4 cut(s) 356, 473, 606, 806
MslI CAYNNNNRTG 2 cut(s) 1079, 1121
MspA1I CMGCKG 1 cut(s) 485
MspI CCGG 1 cut(s) 783
MspR9I CCNGG 3 cut(s) 783, 784, 837
MunI CAATTG 1 cut(s) 1170
Mva1269I GAATGC 2 cut(s) 167, 169
MvaI CCWGG 1 cut(s) 837
MwoI GCNNNNNNNGC 4 cut(s) 521, 530, 685, 980
NciI CCSGG 2 cut(s) 783, 784
NcoI CCATGG 1 cut(s) 1030
NdeII GATC 4 cut(s) 479, 724, 798, 1065
NlaIII CATG 7 cut(s) 218, 247, 700, 981, 1034, 1044, 1123
NlaIV GGNNCC 2 cut(s) 366, 585
NmeAIII GCCGAG 1 cut(s) 117
NmuCI GTSAC 2 cut(s) 29, 817
NsiI ATGCAT 1 cut(s) 169
NspI RCATGY 1 cut(s) 218
PagI TCATGA 1 cut(s) 1119
PctI GAATGC 2 cut(s) 167, 169
PdmI GAANNNNTTC 2 cut(s) 167, 227
PfeI GAWTC 1 cut(s) 860
PflFI GACNNNGTC 1 cut(s) 823
PflMI CCANNNNNTGG 1 cut(s) 794
PfoI TCCNGGA 1 cut(s) 835
PkrI GCNGC 3 cut(s) 406, 659, 740
PleI GAGTC 5 cut(s) 315, 701, 814, 990, 1202
PpsI GAGTC 5 cut(s) 315, 701, 814, 990, 1202
PsiI TTATAA 1 cut(s) 548
Psp6I CCWGG 1 cut(s) 835
PspEI GGTNACC 1 cut(s) 1100
PspGI CCWGG 1 cut(s) 835
PspN4I GGNNCC 2 cut(s) 366, 585
PspPI GGNCC 2 cut(s) 785, 1034
PstI CTGCAG 1 cut(s) 946
PsuI RGATCY 1 cut(s) 798
PsyI GACNNNGTC 1 cut(s) 823
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 5 cut(s) 397, 908, 950, 1131, 1143
RsaNI GTAC 5 cut(s) 396, 907, 949, 1130, 1142
RseI CAYNNNNRTG 2 cut(s) 1079, 1121
SaqAI TTAA 4 cut(s) 356, 473, 606, 806
SatI GCNGC 3 cut(s) 405, 658, 739
Sau3AI GATC 4 cut(s) 479, 724, 798, 1065
Sau96I GGNCC 2 cut(s) 785, 1034
ScaI AGTACT 1 cut(s) 397
SchI GAGTC 5 cut(s) 315, 702, 814, 990, 1203
ScrFI CCNGG 3 cut(s) 783, 784, 837
SduI GDGCHC 2 cut(s) 311, 619
SfaNI GCATC 4 cut(s) 91, 434, 648, 669
SfcI CTRYAG 1 cut(s) 942
SinI GGWCC 1 cut(s) 1034
SmaI CCCGGG 1 cut(s) 784
SmiMI CAYNNNNRTG 2 cut(s) 1079, 1121
SpeI ACTAGT 1 cut(s) 1138
Sse9I AATT 8 cut(s) 80, 148, 549, 564, 755, 853, 932, 1170
SsiI CCGC 1 cut(s) 917
SspMI CTAG 7 cut(s) 77, 260, 312, 384, 446, 1139, 1220
StyD4I CCNGG 3 cut(s) 781, 782, 835
StyI CCWWGG 4 cut(s) 158, 311, 1030, 1189
TaaI ACNGT 5 cut(s) 361, 421, 817, 904, 1129
TaiI ACGT 1 cut(s) 123
TasI AATT 8 cut(s) 80, 148, 549, 564, 755, 853, 932, 1170
TatI WGTACW 2 cut(s) 395, 906
TfiI GAWTC 1 cut(s) 860
Tru1I TTAA 4 cut(s) 356, 473, 606, 806
Tru9I TTAA 4 cut(s) 356, 473, 606, 806
TscAI CASTG 8 cut(s) 181, 261, 535, 713, 822, 909, 951, 1024
TseFI GTSAC 2 cut(s) 29, 817
TseI GCWGC 3 cut(s) 404, 657, 738
Tsp45I GTSAC 2 cut(s) 29, 817
TspDTI ATGAA 1 cut(s) 160
TspGWI ACGGA 1 cut(s) 223
TspMI CCCGGG 1 cut(s) 782
TspRI CASTG 8 cut(s) 181, 261, 535, 713, 822, 909, 951, 1024
Tth111I GACNNNGTC 1 cut(s) 823
Van91I CCANNNNNTGG 1 cut(s) 794
VpaK11BI GGWCC 1 cut(s) 1034
XapI RAATTY 5 cut(s) 80, 564, 755, 853, 932
XbaI TCTAGA 1 cut(s) 76
XceI RCATGY 1 cut(s) 218
XmaI CCCGGG 1 cut(s) 782
XmaJI CCTAGG 1 cut(s) 311
XmnI GAANNNNTTC 2 cut(s) 167, 227
XspI CTAG 7 cut(s) 77, 260, 312, 384, 446, 1139, 1220
ZrmI AGTACT 1 cut(s) 397
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.