pycom02g02490

Equilibrative nucleotide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0013473
Physical Location & Seq
Forward (+)
1543435 .. 1544523
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g02490.2

Sequence Viewer

Length: 933 bp
ATGGAAGGTGGAGTAAAGGGTGTTGAATATCAAGCCCAGCCAAGAGATGCTTACAAGATTGCTTACATTATTCATTTCTTGCTGGGAGCAGGTAATTTGCTTCCTTGGAATGCATTCATCACCGCCGTTGATTATTTCGGGCATCTCTATCCCACCAAGCATGTCGAGAAGGTCTTCTCTGTCGCTTACATGAGTTCTTCGGTACTCGTATTGCTTGTGATGATGACATGGAGTGGCTGGTGGGAGAAGATGAGTCCTAGGCTGAGACTCAACTTGGGATTTTCTCTGTTTGTTCTCTCGTTAATGGTGGCTCCAATTACGGACTGGCTTTCGCACAGTTCTGCGTTGAGTAGTGGGAGAGCTAATGCAGGTTATGGCGTGACAGTTGCATCAGTTGTATTGTGTGGCTTAGCTGATGGCTTGGTAGGAGGAAGCTTGATGGGATCCATCGGCAAGCTTCCGAAAAAATACATGCAAGCTGTTTTTGCAGGAACCGCTTCTTCAGGTGTGATAATTTCTCTGCTGAGGATTTCAACCAAGGCGATGCTTCCACAAACCCCGAAGGGACTACAAACAAGCGCGCACTTGTACTTCATCGTCAGCACCATGTTCCTCCTGTGCTGCATCCTCGCCTGCAACTTGTTATACAGGTTGACAGTCATGCAGGAACACTGCAGGCTTGCTCAAGAAGAACCTTCTTGCGCAAGACCAAAATTTTGGGACCTGGCGCGAAAAATCCCCGTGCCAGCTTTTGGGATTTTCGTAACCTATACAGTGACTCTGTCGATTTTTCCAGGATTTATTGCCGAAGATCTCGAATCCAATCTTTTTCGAGATTGGTATCCTATTTTAAGAGAGGCTGATCACAGTGTACAATGTTGCAGATTTAGTGGGAAAATCATTGACTGCAGTATATCTTCTAAAGAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleoside_tran

Protein Analysis

311

Amino Acids

34.24

Weight (kDa)

8.8

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02630 AT1G02630
fragaria_vesca FvH4_1g03060
malus_domestica MD02G1029900.v1.1 MD15G1171300.v1.1
prunus_persica Prupe.7G245000_v2.0.a1
pyrus_communis pycom02g02490 pycom15g15290
rosa_chinensis RchiOBHm_Chr2g0088191
rosa_laevigata RLG00000015930
rosa_multiflora Rmu_sc0003275.1_g000069
rosa_roxburghii Rroxscaffold_2G00152840
rosa_rugosa Rorug01G0481700
rosa_samantha Rh2AG036700 Rh2BG035900 Rh2CG037000 Rh2DG036400
rosa_wichuraiana Rw2G002890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 703
Acc36I ACCTGC 2 cut(s) 80, 359
AccB7I CCANNNNNTGG 1 cut(s) 752
AccII CGCG 2 cut(s) 581, 730
AciI CCGC 2 cut(s) 123, 495
AclWI GGATC 2 cut(s) 438, 451
AcsI RAATTY 1 cut(s) 713
AcuI CTGAAG 1 cut(s) 486
AfaI GTAC 3 cut(s) 204, 590, 873
AfiI CCNNNNNNNGG 1 cut(s) 752
AgsI TTSAA 2 cut(s) 26, 534
AjnI CCWGG 2 cut(s) 723, 793
AluBI AGCT 6 cut(s) 362, 413, 435, 457, 479, 749
AluI AGCT 6 cut(s) 362, 413, 435, 457, 479, 749
Alw26I GTCTC 1 cut(s) 259
AlwI GGATC 2 cut(s) 438, 451
ApeKI GCWGC 1 cut(s) 621
ApoI RAATTY 1 cut(s) 713
ArsI GACNNNNNNTTYG 2 cut(s) 699, 731
Asp700I GAANNNNTTC 3 cut(s) 113, 173, 496
AspA2I CCTAGG 1 cut(s) 257
AspLEI GCGC 4 cut(s) 581, 583, 704, 730
AspS9I GGNCC 1 cut(s) 721
AsuHPI GGTGA 1 cut(s) 112
AvaII GGWCC 1 cut(s) 721
AvrII CCTAGG 1 cut(s) 257
BamHI GGATCC 1 cut(s) 443
BbsI GAAGAC 1 cut(s) 166
BbvCI CCTCAGC 1 cut(s) 524
BbvI GCAGC 1 cut(s) 608
BccI CCATC 3 cut(s) 410, 433, 455
BceAI ACGGC 1 cut(s) 110
BciT130I CCWGG 2 cut(s) 725, 795
BciVI GTATCC 1 cut(s) 852
BclI TGATCA 1 cut(s) 862
BcoDI GTCTC 1 cut(s) 259
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 2 cut(s) 673, 907
BfuAI ACCTGC 2 cut(s) 80, 359
BfuI GTATCC 1 cut(s) 852
BglII AGATCT 1 cut(s) 811
BisI GCNGC 1 cut(s) 622
BlnI CCTAGG 1 cut(s) 257
BlpI GCTNAGC 1 cut(s) 409
BlsI GCNGC 1 cut(s) 623
Bme1390I CCNGG 2 cut(s) 725, 795
Bme18I GGWCC 1 cut(s) 721
BmgT120I GGNCC 1 cut(s) 721
BmiI GGNNCC 4 cut(s) 312, 445, 493, 722
BmrFI CCNGG 2 cut(s) 725, 795
BmsI GCATC 5 cut(s) 37, 151, 398, 534, 633
BpiI GAAGAC 1 cut(s) 166
Bpu10I CCTNAGC 1 cut(s) 524
Bpu1102I GCTNAGC 1 cut(s) 409
BpuEI CTTGAG 1 cut(s) 669
BsaBI GATNNNNATC 1 cut(s) 840
BsaJI CCNNGG 3 cut(s) 104, 257, 537
Bsc4I CCNNNNNNNGG 1 cut(s) 752
Bse1I ACTGG 1 cut(s) 329
Bse8I GATNNNNATC 1 cut(s) 840
BseBI CCWGG 2 cut(s) 725, 795
BseDI CCNNGG 3 cut(s) 104, 257, 537
BseGI GGATG 1 cut(s) 624
BseJI GATNNNNATC 1 cut(s) 840
BseLI CCNNNNNNNGG 1 cut(s) 752
BseMII CTCAG 2 cut(s) 254, 515
BseNI ACTGG 1 cut(s) 329
BsePI GCGCGC 1 cut(s) 579
BseXI GCAGC 1 cut(s) 608
BseYI CCCAGC 2 cut(s) 36, 82
Bsh1236I CGCG 2 cut(s) 581, 730
BslFI GGGAC 2 cut(s) 579, 734
BslI CCNNNNNNNGG 1 cut(s) 752
BsmAI GTCTC 1 cut(s) 259
BsmFI GGGAC 2 cut(s) 579, 734
BsmI GAATGC 2 cut(s) 113, 115
Bsp1407I TGTACA 1 cut(s) 871
Bsp143I GATC 3 cut(s) 443, 811, 862
Bsp1720I GCTNAGC 1 cut(s) 409
BspACI CCGC 2 cut(s) 123, 495
BspCNI CTCAG 2 cut(s) 255, 516
BspFNI CGCG 2 cut(s) 581, 730
BspLI GGNNCC 4 cut(s) 312, 445, 493, 722
BspMAI CTGCAG 2 cut(s) 677, 911
BspMI ACCTGC 2 cut(s) 80, 359
BspPI GGATC 2 cut(s) 438, 451
BsrGI TGTACA 1 cut(s) 871
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 3 cut(s) 104, 257, 537
BssHII GCGCGC 1 cut(s) 579
BssMI GATC 3 cut(s) 443, 811, 862
BssT1I CCWWGG 3 cut(s) 104, 257, 537
Bst2UI CCWGG 2 cut(s) 725, 795
Bst4CI ACNGT 5 cut(s) 338, 385, 658, 775, 869
BstAUI TGTACA 1 cut(s) 871
BstC8I GCNNGC 7 cut(s) 455, 477, 581, 634, 677, 681, 747
BstDEI CTNAG 3 cut(s) 263, 409, 524
BstF5I GGATG 1 cut(s) 624
BstFNI CGCG 2 cut(s) 581, 730
BstHHI GCGC 4 cut(s) 581, 583, 704, 730
BstKTI GATC 3 cut(s) 446, 814, 865
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 3 cut(s) 443, 811, 862
BstMWI GCNNNNNNNGC 2 cut(s) 485, 494
BstNI CCWGG 2 cut(s) 725, 795
BstNSI RCATGY 2 cut(s) 164, 475
BstSCI CCNGG 2 cut(s) 723, 793
BstSFI CTRYAG 2 cut(s) 673, 907
BstUI CGCG 2 cut(s) 581, 730
BstV1I GCAGC 1 cut(s) 608
BstV2I GAAGAC 1 cut(s) 166
BstX2I RGATCY 2 cut(s) 443, 811
BstXI CCANNNNNNTGG 1 cut(s) 717
BstYI RGATCY 2 cut(s) 443, 811
BsuI GTATCC 1 cut(s) 852
BtgZI GCGATG 1 cut(s) 557
BtsCI GGATG 1 cut(s) 624
BtsI GCAGTG 1 cut(s) 670
BtsIMutI CAGTG 3 cut(s) 670, 780, 874
BveI ACCTGC 2 cut(s) 80, 359
Cac8I GCNNGC 7 cut(s) 455, 477, 581, 634, 677, 681, 747
CfoI GCGC 4 cut(s) 581, 583, 704, 730
Cfr13I GGNCC 1 cut(s) 721
Csp6I GTAC 3 cut(s) 203, 589, 872
CviAII CATG 6 cut(s) 161, 190, 228, 472, 607, 661
CviQI GTAC 3 cut(s) 203, 589, 872
DdeI CTNAG 3 cut(s) 263, 409, 524
DpnI GATC 3 cut(s) 445, 813, 864
DpnII GATC 3 cut(s) 443, 811, 862
Eco130I CCWWGG 3 cut(s) 104, 257, 537
Eco47I GGWCC 1 cut(s) 721
Eco57I CTGAAG 1 cut(s) 486
EcoO109I RGGNCCY 1 cut(s) 721
EcoRII CCWGG 2 cut(s) 723, 793
EcoT14I CCWWGG 3 cut(s) 104, 257, 537
EcoT22I ATGCAT 1 cut(s) 115
ErhI CCWWGG 3 cut(s) 104, 257, 537
FaeI CATG 6 cut(s) 164, 193, 231, 475, 610, 664
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FaqI GGGAC 2 cut(s) 579, 734
FatI CATG 6 cut(s) 160, 189, 227, 471, 606, 660
FbaI TGATCA 1 cut(s) 862
Fnu4HI GCNGC 1 cut(s) 622
FokI GGATG 1 cut(s) 611
Fsp4HI GCNGC 1 cut(s) 622
FspBI CTAG 1 cut(s) 258
FspI TGCGCA 1 cut(s) 703
GlaI GCGC 4 cut(s) 580, 582, 703, 729
GluI GCNGC 1 cut(s) 622
GsaI CCCAGC 2 cut(s) 40, 86
HhaI GCGC 4 cut(s) 581, 583, 704, 730
Hin1II CATG 6 cut(s) 164, 193, 231, 475, 610, 664
Hin6I GCGC 4 cut(s) 579, 581, 702, 728
HinP1I GCGC 4 cut(s) 579, 581, 702, 728
HincII GTYRAC 1 cut(s) 654
HindII GTYRAC 1 cut(s) 654
HindIII AAGCTT 2 cut(s) 433, 455
HinfI GANTC 4 cut(s) 253, 267, 778, 818
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 2 cut(s) 654, 872
Hpy188I TCNGA 1 cut(s) 462
Hpy188III TCNNGA 4 cut(s) 166, 686, 815, 833
Hpy8I GTNNAC 2 cut(s) 654, 872
HpyAV CCTTC 3 cut(s) 163, 556, 705
HpyCH4III ACNGT 5 cut(s) 338, 385, 658, 775, 869
HpyF10VI GCNNNNNNNGC 2 cut(s) 485, 494
HpyF3I CTNAG 3 cut(s) 263, 409, 524
Hsp92II CATG 6 cut(s) 164, 193, 231, 475, 610, 664
HspAI GCGC 4 cut(s) 579, 581, 702, 728
Ksp22I TGATCA 1 cut(s) 862
Kzo9I GATC 3 cut(s) 443, 811, 862
LmnI GCTCC 2 cut(s) 86, 316
Lsp1109I GCAGC 1 cut(s) 608
LweI GCATC 5 cut(s) 37, 151, 398, 534, 633
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 3 cut(s) 379, 763, 775
MalI GATC 3 cut(s) 445, 813, 864
MboI GATC 3 cut(s) 443, 811, 862
MboII GAAGA 7 cut(s) 166, 189, 259, 492, 701, 821, 909
MflI RGATCY 2 cut(s) 443, 811
MluCI AATT 4 cut(s) 94, 315, 513, 713
MlyI GAGTC 3 cut(s) 261, 262, 772
MnlI CCTC 5 cut(s) 422, 519, 623, 638, 850
Mph1103I ATGCAT 1 cut(s) 115
MroXI GAANNNNTTC 3 cut(s) 113, 173, 496
MseI TTAA 3 cut(s) 302, 851, 931
MspR9I CCNGG 2 cut(s) 725, 795
Mva1269I GAATGC 2 cut(s) 113, 115
MvaI CCWGG 2 cut(s) 725, 795
MvnI CGCG 2 cut(s) 581, 730
MwoI GCNNNNNNNGC 2 cut(s) 485, 494
NdeII GATC 3 cut(s) 443, 811, 862
NlaIII CATG 6 cut(s) 164, 193, 231, 475, 610, 664
NlaIV GGNNCC 4 cut(s) 312, 445, 493, 722
NmuCI GTSAC 2 cut(s) 379, 775
NsbI TGCGCA 1 cut(s) 703
NsiI ATGCAT 1 cut(s) 115
NspI RCATGY 2 cut(s) 164, 475
PauI GCGCGC 1 cut(s) 579
PctI GAATGC 2 cut(s) 113, 115
PdmI GAANNNNTTC 3 cut(s) 113, 173, 496
PfeI GAWTC 1 cut(s) 818
PflFI GACNNNGTC 1 cut(s) 781
PflMI CCANNNNNTGG 1 cut(s) 752
PfoI TCCNGGA 1 cut(s) 793
PkrI GCNGC 1 cut(s) 623
PleI GAGTC 3 cut(s) 261, 261, 772
PpsI GAGTC 3 cut(s) 261, 261, 772
PpuMI RGGWCCY 1 cut(s) 721
Psp5II RGGWCCY 1 cut(s) 721
Psp6I CCWGG 2 cut(s) 723, 793
PspFI CCCAGC 2 cut(s) 36, 82
PspGI CCWGG 2 cut(s) 723, 793
PspN4I GGNNCC 4 cut(s) 312, 445, 493, 722
PspPI GGNCC 1 cut(s) 721
PspPPI RGGWCCY 1 cut(s) 721
PstI CTGCAG 2 cut(s) 677, 911
PsuI RGATCY 2 cut(s) 443, 811
PsyI GACNNNGTC 1 cut(s) 781
PteI GCGCGC 1 cut(s) 579
RsaI GTAC 3 cut(s) 204, 590, 873
RsaNI GTAC 3 cut(s) 203, 589, 872
SaqAI TTAA 3 cut(s) 302, 851, 931
SatI GCNGC 1 cut(s) 622
Sau3AI GATC 3 cut(s) 443, 811, 862
Sau96I GGNCC 1 cut(s) 721
SchI GAGTC 3 cut(s) 261, 262, 772
ScrFI CCNGG 2 cut(s) 725, 795
SfaNI GCATC 5 cut(s) 37, 151, 398, 534, 633
SfcI CTRYAG 2 cut(s) 673, 907
SinI GGWCC 1 cut(s) 721
SmlI CTYRAG 1 cut(s) 684
SmoI CTYRAG 1 cut(s) 684
Sse9I AATT 4 cut(s) 94, 315, 513, 713
SsiI CCGC 2 cut(s) 123, 495
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 2 cut(s) 723, 793
StyI CCWWGG 3 cut(s) 104, 257, 537
TaaI ACNGT 5 cut(s) 338, 385, 658, 775, 869
TaqI TCGA 4 cut(s) 165, 785, 816, 832
TasI AATT 4 cut(s) 94, 315, 513, 713
TatI WGTACW 2 cut(s) 588, 871
TfiI GAWTC 1 cut(s) 818
Tru1I TTAA 3 cut(s) 302, 851, 931
Tru9I TTAA 3 cut(s) 302, 851, 931
TscAI CASTG 3 cut(s) 677, 780, 874
TseFI GTSAC 2 cut(s) 379, 775
TseI GCWGC 1 cut(s) 621
Tsp45I GTSAC 2 cut(s) 379, 775
TspDTI ATGAA 3 cut(s) 62, 106, 583
TspGWI ACGGA 1 cut(s) 335
TspRI CASTG 3 cut(s) 677, 780, 874
Tth111I GACNNNGTC 1 cut(s) 781
Van91I CCANNNNNTGG 1 cut(s) 752
VpaK11BI GGWCC 1 cut(s) 721
XapI RAATTY 1 cut(s) 713
XceI RCATGY 2 cut(s) 164, 475
XcmI CCANNNNNNNNNTGG 1 cut(s) 321
XmaJI CCTAGG 1 cut(s) 257
XmnI GAANNNNTTC 3 cut(s) 113, 173, 496
XspI CTAG 1 cut(s) 258
Zsp2I ATGCAT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.