Rmu_sc0003275.1_g000069

Equilibrative nucleotide transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003275.1
OG0013473
Physical Location & Seq
Forward (+)
250451 .. 251719
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003275.1_g000069.1.cds

Sequence Viewer

Length: 1269 bp
atggaaagtggagtaaaaggtctagaattcaaagatgagcctagagatgcttacaagattgcttacgttattcacttcttgctcggcgctggcaatttgcttccttggaatgcattcatcactgctgttgattactttggctatctctatccaaccaagcatgttgagaaggtcttctccgtagcttacatgagttcttcagtgctagttctggttgtaatgatgacttggggttgctggtgggagaaaatgagccctaggctcagactcaacttgggttttttgatgtttattctctcgttaaccgtggctcctatcacagattgggctagttatctcagtactaatgcagcttatggtgtaacagttgcatcagttgtaatatgtggcctagctgatggcttggtaggtggaagcttaatgggatcagctggaaagcttcccaaaaagtatatgcaggctgtttttgctggcactgcttcttcaggtaccatgcaaattataacctcagtaaatgtatgtgaacttttttccctcccaatatttaaattagagttcttggtttcaggtgttataatttgtgtcctgagaatttcaacaaaggcaatggttccacagaccccaaaaggacttaaaacaagtgcccacttatattttattgtcagcatcattatactcctatgctgcatcctttgttccaacttgctatacaagctgagagtcatgcaggaacactgcaaacttgttcaagatcaatccttttgctgctcatcaaggccgaaattttgggctgtggcgcaaaaagttcccgggccagcttttgggatcttcttaatctatacagtgactctgtcaatctttccaggatttatagctgaaaatttggaatccaagcttcttcaagattggtatcccattttgcttatcacagtgtacaactttgcggatttagtaggtaaatttttgactgcagtgtaccttctgaagagtatcaaaaaggcaacatgggcttgtgttaccagactcttattctatccaatcttcactgcttgcctccatggaccaacatggctgaaaactgaagttcctatgatcttcctcacatttatgcttggaatgtccaatggttacctcacaagtgtcatcatgatgacagtaccaaaactagtaccagttccagaagcagaactatctgcaattgtaatggttgtgttccttggagttgggttggttagtggttcggttctaggctggttctggattttatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nucleoside_tran

Protein Analysis

422

Amino Acids

46.71

Weight (kDa)

8.95

Isoelectric Point (pI)

26.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G02630 AT1G02630
fragaria_vesca FvH4_1g03060
malus_domestica MD02G1029900.v1.1 MD15G1171300.v1.1
prunus_persica Prupe.7G245000_v2.0.a1
pyrus_communis pycom02g02490 pycom15g15290
rosa_chinensis RchiOBHm_Chr2g0088191
rosa_laevigata RLG00000015930
rosa_multiflora Rmu_sc0003275.1_g000069
rosa_roxburghii Rroxscaffold_2G00152840
rosa_rugosa Rorug01G0481700
rosa_samantha Rh2AG036700 Rh2BG035900 Rh2CG037000 Rh2DG036400
rosa_wichuraiana Rw2G002890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 503, 575
Acc65I GGTACC 1 cut(s) 488
AccB1I GGYRCC 1 cut(s) 488
AccB7I CCANNNNNTGG 1 cut(s) 821
AciI CCGC 1 cut(s) 944
AclWI GGATC 2 cut(s) 433, 833
AcsI RAATTY 5 cut(s) 26, 591, 782, 880, 959
AcuI CTGAAG 4 cut(s) 183, 468, 1004, 1101
AfaI GTAC 6 cut(s) 343, 490, 935, 977, 1158, 1170
AfiI CCNNNNNNNGG 1 cut(s) 821
AgsI TTSAA 4 cut(s) 31, 597, 749, 902
AhlI ACTAGT 1 cut(s) 1165
AjnI CCWGG 1 cut(s) 862
AlwI GGATC 2 cut(s) 433, 833
Ama87I CYCGRG 1 cut(s) 809
AoxI GGCC 3 cut(s) 388, 776, 812
ApeKI GCWGC 3 cut(s) 350, 684, 765
ApoI RAATTY 5 cut(s) 26, 591, 782, 880, 959
Asp700I GAANNNNTTC 2 cut(s) 113, 173
Asp718I GGTACC 1 cut(s) 488
AspA2I CCTAGG 1 cut(s) 257
AspLEI GCGC 2 cut(s) 89, 799
AspS9I GGNCC 2 cut(s) 812, 1061
AsuC2I CCSGG 2 cut(s) 810, 811
AvaI CYCGRG 1 cut(s) 809
AvaII GGWCC 1 cut(s) 1061
AvrII CCTAGG 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 646
BanI GGYRCC 1 cut(s) 488
BanII GRGCYC 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 166
BbvI GCAGC 3 cut(s) 362, 671, 752
BccI CCATC 1 cut(s) 392
BciT130I CCWGG 1 cut(s) 864
BciVI GTATCC 1 cut(s) 921
BcnI CCSGG 2 cut(s) 810, 811
BcuI ACTAGT 1 cut(s) 1165
BfaI CTAG 8 cut(s) 23, 42, 206, 258, 330, 392, 1166, 1247
BfmI CTRYAG 1 cut(s) 969
BfoI RGCGCY 1 cut(s) 90
BfuI GTATCC 1 cut(s) 921
BisI GCNGC 3 cut(s) 351, 685, 766
BlnI CCTAGG 1 cut(s) 257
BlsI GCNGC 3 cut(s) 352, 686, 767
BmcAI AGTACT 1 cut(s) 343
Bme1390I CCNGG 3 cut(s) 810, 811, 864
Bme18I GGWCC 1 cut(s) 1061
BmeT110I CYCGRG 1 cut(s) 809
BmgT120I GGNCC 2 cut(s) 812, 1061
BmiI GGNNCC 3 cut(s) 312, 490, 612
BmrFI CCNGG 3 cut(s) 810, 811, 864
BmsI GCATC 4 cut(s) 37, 380, 675, 696
BpiI GAAGAC 1 cut(s) 166
BpuMI CCSGG 2 cut(s) 810, 811
BsaBI GATNNNNATC 1 cut(s) 909
BsaJI CCNNGG 6 cut(s) 104, 257, 306, 809, 1057, 1216
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bsc4I CCNNNNNNNGG 1 cut(s) 821
Bse1I ACTGG 1 cut(s) 1172
Bse3DI GCAATG 1 cut(s) 612
Bse8I GATNNNNATC 1 cut(s) 909
BseBI CCWGG 1 cut(s) 864
BseDI CCNNGG 6 cut(s) 104, 257, 306, 809, 1057, 1216
BseGI GGATG 1 cut(s) 687
BseJI GATNNNNATC 1 cut(s) 909
BseLI CCNNNNNNNGG 1 cut(s) 821
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 5 cut(s) 277, 352, 522, 578, 707
BseNI ACTGG 1 cut(s) 1172
BseSI GKGCMC 1 cut(s) 646
BseXI GCAGC 3 cut(s) 362, 671, 752
BshFI GGCC 3 cut(s) 390, 778, 814
BshNI GGYRCC 1 cut(s) 488
BsiHKCI CYCGRG 1 cut(s) 809
BsiSI CCGG 1 cut(s) 810
BslI CCNNNNNNNGG 1 cut(s) 821
BsmI GAATGC 2 cut(s) 113, 115
BsnI GGCC 3 cut(s) 390, 778, 814
BsoBI CYCGRG 1 cut(s) 809
Bsp1286I GDGCHC 2 cut(s) 257, 646
Bsp1407I TGTACA 1 cut(s) 933
Bsp143I GATC 4 cut(s) 425, 751, 825, 1092
Bsp19I CCATGG 1 cut(s) 1057
BspACI CCGC 1 cut(s) 944
BspANI GGCC 3 cut(s) 390, 778, 814
BspCNI CTCAG 5 cut(s) 276, 351, 521, 579, 708
BspHI TCATGA 1 cut(s) 1146
BspLI GGNNCC 3 cut(s) 312, 490, 612
BspMAI CTGCAG 1 cut(s) 973
BspPI GGATC 2 cut(s) 433, 833
BspT107I GGYRCC 1 cut(s) 488
BsrDI GCAATG 1 cut(s) 612
BsrGI TGTACA 1 cut(s) 933
BsrI ACTGG 1 cut(s) 1172
BssECI CCNNGG 6 cut(s) 104, 257, 306, 809, 1057, 1216
BssMI GATC 4 cut(s) 425, 751, 825, 1092
BssT1I CCWWGG 4 cut(s) 104, 257, 1057, 1216
Bst2UI CCWGG 1 cut(s) 864
Bst4CI ACNGT 5 cut(s) 307, 367, 844, 931, 1156
Bst6I CTCTTC 1 cut(s) 980
BstAUI TGTACA 1 cut(s) 933
BstC8I GCNNGC 5 cut(s) 91, 459, 472, 816, 1051
BstDEI CTNAG 5 cut(s) 263, 338, 508, 587, 716
BstDSI CCRYGG 2 cut(s) 306, 1057
BstEII GGTNACC 1 cut(s) 1127
BstF5I GGATG 1 cut(s) 687
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 2 cut(s) 89, 799
BstKTI GATC 4 cut(s) 428, 754, 828, 1095
BstMBI GATC 4 cut(s) 425, 751, 825, 1092
BstMWI GCNNNNNNNGC 4 cut(s) 467, 476, 712, 1007
BstNI CCWGG 1 cut(s) 864
BstNSI RCATGY 1 cut(s) 164
BstPI GGTNACC 1 cut(s) 1127
BstSCI CCNGG 3 cut(s) 808, 809, 862
BstSFI CTRYAG 1 cut(s) 969
BstSLI GKGCMC 1 cut(s) 646
BstV1I GCAGC 3 cut(s) 362, 671, 752
BstV2I GAAGAC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 825
BstYI RGATCY 1 cut(s) 825
BsuI GTATCC 1 cut(s) 921
BsuRI GGCC 3 cut(s) 390, 778, 814
BtgI CCRYGG 2 cut(s) 306, 1057
BtsCI GGATG 1 cut(s) 687
BtsI GCAGTG 5 cut(s) 120, 474, 733, 978, 1044
BtsIMutI CAGTG 8 cut(s) 120, 207, 474, 733, 849, 936, 978, 1044
Cac8I GCNNGC 5 cut(s) 91, 459, 472, 816, 1051
CciI TCATGA 1 cut(s) 1146
CfoI GCGC 2 cut(s) 89, 799
Cfr13I GGNCC 2 cut(s) 812, 1061
Cfr9I CCCGGG 1 cut(s) 809
Csp6I GTAC 6 cut(s) 342, 489, 934, 976, 1157, 1169
CviAII CATG 8 cut(s) 161, 190, 493, 724, 1005, 1058, 1068, 1147
CviQI GTAC 6 cut(s) 342, 489, 934, 976, 1157, 1169
DdeI CTNAG 5 cut(s) 263, 338, 508, 587, 716
DpnI GATC 4 cut(s) 427, 753, 827, 1094
DpnII GATC 4 cut(s) 425, 751, 825, 1092
DraI TTTAAA 1 cut(s) 547
Eam1104I CTCTTC 1 cut(s) 980
EarI CTCTTC 1 cut(s) 980
Eco130I CCWWGG 4 cut(s) 104, 257, 1057, 1216
Eco24I GRGCYC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 1061
Eco57I CTGAAG 4 cut(s) 183, 468, 1004, 1101
Eco88I CYCGRG 1 cut(s) 809
Eco91I GGTNACC 1 cut(s) 1127
EcoO65I GGTNACC 1 cut(s) 1127
EcoRI GAATTC 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 862
EcoT14I CCWWGG 4 cut(s) 104, 257, 1057, 1216
EcoT22I ATGCAT 1 cut(s) 115
EcoT38I GRGCYC 1 cut(s) 257
ErhI CCWWGG 4 cut(s) 104, 257, 1057, 1216
FaeI CATG 8 cut(s) 164, 193, 496, 727, 1008, 1061, 1071, 1150
FatI CATG 8 cut(s) 160, 189, 492, 723, 1004, 1057, 1067, 1146
Fnu4HI GCNGC 3 cut(s) 351, 685, 766
FokI GGATG 1 cut(s) 674
FriOI GRGCYC 1 cut(s) 257
Fsp4HI GCNGC 3 cut(s) 351, 685, 766
FspBI CTAG 8 cut(s) 23, 42, 206, 258, 330, 392, 1166, 1247
GlaI GCGC 2 cut(s) 88, 798
GluI GCNGC 3 cut(s) 351, 685, 766
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 3 cut(s) 390, 778, 814
HapII CCGG 1 cut(s) 810
HhaI GCGC 2 cut(s) 89, 799
Hin1II CATG 8 cut(s) 164, 193, 496, 727, 1008, 1061, 1071, 1150
Hin6I GCGC 2 cut(s) 87, 797
HinP1I GCGC 2 cut(s) 87, 797
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HindIII AAGCTT 3 cut(s) 415, 437, 893
HinfI GANTC 5 cut(s) 267, 720, 847, 887, 1023
HpaI GTTAAC 1 cut(s) 303
HpaII CCGG 1 cut(s) 810
Hpy166II GTNNAC 4 cut(s) 303, 524, 934, 976
Hpy188I TCNGA 2 cut(s) 266, 984
Hpy188III TCNNGA 7 cut(s) 23, 586, 749, 902, 1147, 1178, 1258
Hpy8I GTNNAC 4 cut(s) 303, 524, 934, 976
HpyAV CCTTC 2 cut(s) 163, 989
HpyCH4III ACNGT 5 cut(s) 307, 367, 844, 931, 1156
HpyCH4IV ACGT 1 cut(s) 66
HpyF10VI GCNNNNNNNGC 4 cut(s) 467, 476, 712, 1007
HpyF3I CTNAG 5 cut(s) 263, 338, 508, 587, 716
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 8 cut(s) 164, 193, 496, 727, 1008, 1061, 1071, 1150
HspAI GCGC 2 cut(s) 87, 797
KpnI GGTACC 1 cut(s) 492
KspAI GTTAAC 1 cut(s) 303
Kzo9I GATC 4 cut(s) 425, 751, 825, 1092
LmnI GCTCC 1 cut(s) 316
Lsp1109I GCAGC 3 cut(s) 362, 671, 752
LweI GCATC 4 cut(s) 37, 380, 675, 696
MaeI CTAG 8 cut(s) 23, 42, 206, 258, 330, 392, 1166, 1247
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 4 cut(s) 361, 844, 1015, 1127
MalI GATC 4 cut(s) 427, 753, 827, 1094
MboI GATC 4 cut(s) 425, 751, 825, 1092
MboII GAAGA 8 cut(s) 166, 189, 474, 820, 890, 997, 1033, 1087
MfeI CAATTG 1 cut(s) 1197
MflI RGATCY 1 cut(s) 825
MhlI GDGCHC 2 cut(s) 257, 646
MlyI GAGTC 4 cut(s) 261, 729, 841, 1017
MmeI TCCRAC 2 cut(s) 176, 723
MnlI CCTC 5 cut(s) 517, 545, 1064, 1109, 1142
Mph1103I ATGCAT 1 cut(s) 115
MroXI GAANNNNTTC 2 cut(s) 113, 173
MseI TTAA 5 cut(s) 302, 419, 546, 633, 833
MslI CAYNNNNRTG 2 cut(s) 1106, 1148
MspA1I CMGCKG 1 cut(s) 431
MspI CCGG 1 cut(s) 810
MspR9I CCNGG 3 cut(s) 810, 811, 864
MunI CAATTG 1 cut(s) 1197
Mva1269I GAATGC 2 cut(s) 113, 115
MvaI CCWGG 1 cut(s) 864
MwoI GCNNNNNNNGC 4 cut(s) 467, 476, 712, 1007
NciI CCSGG 2 cut(s) 810, 811
NcoI CCATGG 1 cut(s) 1057
NdeII GATC 4 cut(s) 425, 751, 825, 1092
NlaIII CATG 8 cut(s) 164, 193, 496, 727, 1008, 1061, 1071, 1150
NlaIV GGNNCC 3 cut(s) 312, 490, 612
NmeAIII GCCGAG 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 844
NsiI ATGCAT 1 cut(s) 115
NspI RCATGY 1 cut(s) 164
PagI TCATGA 1 cut(s) 1146
PctI GAATGC 2 cut(s) 113, 115
PdmI GAANNNNTTC 2 cut(s) 113, 173
PfeI GAWTC 1 cut(s) 887
PflFI GACNNNGTC 1 cut(s) 850
PflMI CCANNNNNTGG 1 cut(s) 821
PfoI TCCNGGA 1 cut(s) 862
PkrI GCNGC 3 cut(s) 352, 686, 767
PleI GAGTC 4 cut(s) 261, 728, 841, 1017
PpsI GAGTC 4 cut(s) 261, 728, 841, 1017
PsiI TTATAA 2 cut(s) 503, 575
Psp6I CCWGG 1 cut(s) 862
PspEI GGTNACC 1 cut(s) 1127
PspGI CCWGG 1 cut(s) 862
PspN4I GGNNCC 3 cut(s) 312, 490, 612
PspPI GGNCC 2 cut(s) 812, 1061
PstI CTGCAG 1 cut(s) 973
PsuI RGATCY 1 cut(s) 825
PsyI GACNNNGTC 1 cut(s) 850
PvuII CAGCTG 1 cut(s) 431
RsaI GTAC 6 cut(s) 343, 490, 935, 977, 1158, 1170
RsaNI GTAC 6 cut(s) 342, 489, 934, 976, 1157, 1169
RseI CAYNNNNRTG 2 cut(s) 1106, 1148
SaqAI TTAA 5 cut(s) 302, 419, 546, 633, 833
SatI GCNGC 3 cut(s) 351, 685, 766
Sau3AI GATC 4 cut(s) 425, 751, 825, 1092
Sau96I GGNCC 2 cut(s) 812, 1061
ScaI AGTACT 1 cut(s) 343
SchI GAGTC 4 cut(s) 261, 729, 841, 1017
ScrFI CCNGG 3 cut(s) 810, 811, 864
SduI GDGCHC 2 cut(s) 257, 646
SfaNI GCATC 4 cut(s) 37, 380, 675, 696
SfcI CTRYAG 1 cut(s) 969
SinI GGWCC 1 cut(s) 1061
SmaI CCCGGG 1 cut(s) 811
SmiI ATTTAAAT 1 cut(s) 547
SmiMI CAYNNNNRTG 2 cut(s) 1106, 1148
SpeI ACTAGT 1 cut(s) 1165
SsiI CCGC 1 cut(s) 944
SspI AATATT 1 cut(s) 543
SspMI CTAG 8 cut(s) 23, 42, 206, 258, 330, 392, 1166, 1247
StyD4I CCNGG 3 cut(s) 808, 809, 862
StyI CCWWGG 4 cut(s) 104, 257, 1057, 1216
SwaI ATTTAAAT 1 cut(s) 547
TaaI ACNGT 5 cut(s) 307, 367, 844, 931, 1156
TaiI ACGT 1 cut(s) 69
TatI WGTACW 2 cut(s) 341, 933
TfiI GAWTC 1 cut(s) 887
Tru1I TTAA 5 cut(s) 302, 419, 546, 633, 833
Tru9I TTAA 5 cut(s) 302, 419, 546, 633, 833
TscAI CASTG 8 cut(s) 127, 207, 481, 740, 849, 936, 978, 1051
TseFI GTSAC 1 cut(s) 844
TseI GCWGC 3 cut(s) 350, 684, 765
Tsp45I GTSAC 1 cut(s) 844
TspDTI ATGAA 1 cut(s) 106
TspGWI ACGGA 1 cut(s) 169
TspMI CCCGGG 1 cut(s) 809
TspRI CASTG 8 cut(s) 127, 207, 481, 740, 849, 936, 978, 1051
Tth111I GACNNNGTC 1 cut(s) 850
Van91I CCANNNNNTGG 1 cut(s) 821
VpaK11BI GGWCC 1 cut(s) 1061
XapI RAATTY 5 cut(s) 26, 591, 782, 880, 959
XbaI TCTAGA 1 cut(s) 22
XceI RCATGY 1 cut(s) 164
XmaI CCCGGG 1 cut(s) 809
XmaJI CCTAGG 1 cut(s) 257
XmnI GAANNNNTTC 2 cut(s) 113, 173
XspI CTAG 8 cut(s) 23, 42, 206, 258, 330, 392, 1166, 1247
ZrmI AGTACT 1 cut(s) 343
Zsp2I ATGCAT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.