FvH4_1g04380

protein ABIL5 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013584
Physical Location & Seq
Forward (+)
2345056 .. 2346979
1924 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04380.t1

Sequence Viewer

Length: 750 bp
ATGGAGAAGATGGAGGACTCTATACCCTGTTCAGGGAAACAAGGAGATTCAGAAGACGAGTCCAAGGAGGTTGTGAACTTTGACAAGTCTCTCCAGGAACTGAAAGACTTGAGCTCCCAACTTCATTATGCTGCTGAATACTGTGAATCAACCTTCTTGGCTGCCCAAGAAAAGAGAGCTGTGGTGGAAAACACAAAAGAGTATGTATGCAGAGCTGTGATTACTGTTGTTGATCATCTCGGATGCGTTTCTGCTAACCTCAATGGCCTCATTTCCGAGACTAATGAATTTTCAGACGCCGAGCTGCGAGTAGATTGCCTCAAACAAAGAATTCTCCTGTGTGAACAATTTACCCACAAGCTTGCTCTCACAAGAACAAGATGGCATGAGACTTTGCCGAGGCATAGCGCACGTTTTCTATTTGCACCTATCAGACATGATGAGAAATCTAATGAAGATATGAGGGATTCTGGAAAACCAGCCTTTCGGAAAACTATTGACAAGCATGAATTTGAGAAAGAGGAAGCAATGCCACTTTTCGTGTACACTTACTCACACAAACCATCTTTGTCCAAGGATAATGCTAATTCAGCTTTAGTGCCTGTTCGTGATGGCCTATCAATCCTTTCCAGAGGTCCAAATCCTACATTTCATTTTCAGGAAACTCGGAAGAAAGGACGCAACATTAGGAAATCTGGGCAGGGTGGTGACATTTTTTCACTCATGAGACGAGCTAGACGAGCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

28.48

Weight (kDa)

7.67

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 287, 330, 509
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 1 cut(s) 545
AfiI CCNNNNNNNGG 2 cut(s) 32, 33
AjnI CCWGG 1 cut(s) 93
AluBI AGCT 7 cut(s) 114, 179, 215, 304, 361, 593, 734
AluI AGCT 7 cut(s) 114, 179, 215, 304, 361, 593, 734
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 4 cut(s) 93, 272, 383, 721
AlwNI CAGNNNCTG 1 cut(s) 100
AoxI GGCC 2 cut(s) 265, 613
ApeKI GCWGC 3 cut(s) 131, 161, 304
ApoI RAATTY 3 cut(s) 287, 330, 509
AspLEI GCGC 1 cut(s) 410
AspS9I GGNCC 1 cut(s) 635
AsuHPI GGTGA 1 cut(s) 719
AvaII GGWCC 1 cut(s) 635
BanII GRGCYC 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 3 cut(s) 118, 148, 291
BccI CCATC 4 cut(s) 4, 375, 571, 605
BcgI CGANNNNNNTGC 2 cut(s) 297, 331
BciT130I CCWGG 1 cut(s) 95
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 4 cut(s) 93, 272, 383, 721
BfaI CTAG 1 cut(s) 735
BisI GCNGC 3 cut(s) 132, 162, 305
BlsI GCNGC 3 cut(s) 133, 163, 306
Bme1390I CCNGG 1 cut(s) 95
Bme18I GGWCC 1 cut(s) 635
BmgT120I GGNCC 1 cut(s) 635
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 1 cut(s) 233
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 77
BpuEI CTTGAG 1 cut(s) 130
BsaHI GRCGYC 1 cut(s) 297
BsaJI CCNNGG 3 cut(s) 63, 398, 573
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 33
Bse3DI GCAATG 2 cut(s) 534, 750
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 3 cut(s) 63, 398, 573
BseGI GGATG 1 cut(s) 248
BseLI CCNNNNNNNGG 2 cut(s) 32, 33
BseMI GCAATG 2 cut(s) 534, 750
BseXI GCAGC 3 cut(s) 118, 148, 291
BshFI GGCC 2 cut(s) 267, 615
BsiHKAI GWGCWC 1 cut(s) 116
BslI CCNNNNNNNGG 2 cut(s) 32, 33
BsmAI GTCTC 4 cut(s) 93, 272, 383, 721
BsmBI CGTCTC 1 cut(s) 721
BsnI GGCC 2 cut(s) 267, 615
Bsp1286I GDGCHC 1 cut(s) 116
Bsp1407I TGTACA 1 cut(s) 543
Bsp143I GATC 1 cut(s) 232
BspANI GGCC 2 cut(s) 267, 615
BspHI TCATGA 1 cut(s) 723
BsrDI GCAATG 2 cut(s) 534, 750
BsrGI TGTACA 1 cut(s) 543
BssECI CCNNGG 3 cut(s) 63, 398, 573
BssMI GATC 1 cut(s) 232
BssNI GRCGYC 1 cut(s) 297
BssT1I CCWWGG 2 cut(s) 63, 573
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 2 cut(s) 143, 226
BstACI GRCGYC 1 cut(s) 297
BstAUI TGTACA 1 cut(s) 543
BstC8I GCNNGC 1 cut(s) 363
BstF5I GGATG 1 cut(s) 248
BstHHI GCGC 1 cut(s) 410
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 4 cut(s) 93, 272, 383, 721
BstMBI GATC 1 cut(s) 232
BstMWI GCNNNNNNNGC 2 cut(s) 590, 740
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 93
BstV1I GCAGC 3 cut(s) 118, 148, 291
BstV2I GAAGAC 1 cut(s) 60
BsuRI GGCC 2 cut(s) 267, 615
BtsCI GGATG 1 cut(s) 248
Cac8I GCNNGC 1 cut(s) 363
CaiI CAGNNNCTG 1 cut(s) 100
CciI TCATGA 1 cut(s) 723
CfoI GCGC 1 cut(s) 410
Cfr13I GGNCC 1 cut(s) 635
CseI GACGC 2 cut(s) 305, 687
Csp6I GTAC 1 cut(s) 544
CviAII CATG 4 cut(s) 386, 437, 506, 724
CviQI GTAC 1 cut(s) 544
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 2 cut(s) 63, 573
Eco24I GRGCYC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 635
Eco53kI GAGCTC 1 cut(s) 114
EcoICRI GAGCTC 1 cut(s) 114
EcoRI GAATTC 1 cut(s) 330
EcoRII CCWGG 1 cut(s) 93
EcoT14I CCWWGG 2 cut(s) 63, 573
EcoT38I GRGCYC 1 cut(s) 116
ErhI CCWWGG 2 cut(s) 63, 573
Esp3I CGTCTC 1 cut(s) 721
FaeI CATG 4 cut(s) 389, 440, 509, 727
FatI CATG 4 cut(s) 385, 436, 505, 723
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 3 cut(s) 132, 162, 305
FokI GGATG 1 cut(s) 255
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 3 cut(s) 132, 162, 305
FspBI CTAG 1 cut(s) 735
GlaI GCGC 1 cut(s) 409
GluI GCNGC 3 cut(s) 132, 162, 305
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 2 cut(s) 267, 615
HgaI GACGC 2 cut(s) 305, 687
HhaI GCGC 1 cut(s) 410
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 4 cut(s) 389, 440, 509, 727
Hin6I GCGC 1 cut(s) 408
HinP1I GCGC 1 cut(s) 408
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 5 cut(s) 17, 47, 59, 146, 467
HphI GGTGA 1 cut(s) 719
Hpy166II GTNNAC 4 cut(s) 76, 344, 544, 546
Hpy188I TCNGA 7 cut(s) 52, 242, 277, 295, 434, 489, 669
Hpy188III TCNNGA 5 cut(s) 471, 608, 630, 659, 724
Hpy8I GTNNAC 4 cut(s) 76, 344, 544, 546
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 2 cut(s) 143, 226
HpyCH4IV ACGT 1 cut(s) 412
HpyCH4V TGCA 2 cut(s) 210, 425
HpyF10VI GCNNNNNNNGC 2 cut(s) 590, 740
HpySE526I ACGT 1 cut(s) 412
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 4 cut(s) 389, 440, 509, 727
HspAI GCGC 1 cut(s) 408
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 1 cut(s) 232
LmnI GCTCC 1 cut(s) 119
Lsp1109I GCAGC 3 cut(s) 118, 148, 291
LweI GCATC 1 cut(s) 233
MaeI CTAG 1 cut(s) 735
MaeII ACGT 1 cut(s) 412
MaeIII GTNAC 1 cut(s) 707
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 4 cut(s) 19, 65, 467, 682
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 5 cut(s) 287, 330, 347, 509, 586
MlyI GAGTC 2 cut(s) 11, 68
MnlI CCTC 9 cut(s) 7, 61, 269, 278, 329, 393, 456, 514, 626
MspR9I CCNGG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 590, 740
NdeII GATC 1 cut(s) 232
NlaIII CATG 4 cut(s) 389, 440, 509, 727
NmeAIII GCCGAG 2 cut(s) 325, 423
NmuCI GTSAC 1 cut(s) 707
PagI TCATGA 1 cut(s) 723
PcsI WCGNNNNNNNCGW 1 cut(s) 736
PfeI GAWTC 3 cut(s) 47, 146, 467
PfoI TCCNGGA 1 cut(s) 93
PkrI GCNGC 3 cut(s) 133, 163, 306
PleI GAGTC 2 cut(s) 11, 67
PpsI GAGTC 2 cut(s) 11, 67
Psp124BI GAGCTC 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspPI GGNCC 1 cut(s) 635
PstNI CAGNNNCTG 1 cut(s) 100
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
SacI GAGCTC 1 cut(s) 116
SatI GCNGC 3 cut(s) 132, 162, 305
Sau3AI GATC 1 cut(s) 232
Sau96I GGNCC 1 cut(s) 635
SchI GAGTC 2 cut(s) 11, 68
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 1 cut(s) 116
SfaNI GCATC 1 cut(s) 233
SinI GGWCC 1 cut(s) 635
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
Sse9I AATT 5 cut(s) 287, 330, 347, 509, 586
SspMI CTAG 1 cut(s) 735
SstI GAGCTC 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 93
StyI CCWWGG 2 cut(s) 63, 573
TaaI ACNGT 2 cut(s) 143, 226
TaiI ACGT 1 cut(s) 415
TasI AATT 5 cut(s) 287, 330, 347, 509, 586
TatI WGTACW 1 cut(s) 543
TfiI GAWTC 3 cut(s) 47, 146, 467
TseFI GTSAC 1 cut(s) 707
TseI GCWGC 3 cut(s) 131, 161, 304
Tsp45I GTSAC 1 cut(s) 707
TspDTI ATGAA 5 cut(s) 113, 300, 468, 522, 641
VpaK11BI GGWCC 1 cut(s) 635
XapI RAATTY 3 cut(s) 287, 330, 509
XspI CTAG 1 cut(s) 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.