Rroxscaffold_2G00151460

protein ABIL5 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013584
Physical Location & Seq
Reverse (-)
88708332 .. 88710110
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00151460.1

Sequence Viewer

Length: 666 bp
ATGGAGAAGATGGAGAACTCTATACCCTGTTCAGGGAAGCAAGAAGATTCAGAAGGCGAGTCCAAGGACATTGTGAACTTTGATAAGTCTCTCCAGGAACTAAGAGACTTGAGCTCCCAACTTCATTATGCTGCTGACTACTGTGAATCAACCTTCTTGGCTGCCCAAGAAAAGAGAGCTGTGGTGGAAAACACAAAAGAGTACATATGCAGAGCTGTGATTACTGTTGTTGATCATCTAGGATGCGTTTCTGCTAACCTTAATGGTCTCATTTCCGAGACTAATGAGTTTTCAGACGCTGAGCTGCGAATCAATTGCCTCGAACAAGTTACTATAATCATCATCATCTTCAATTCATCATCATCTATCTCTAGAGATGATGAGAAATCAAATGAAGATACAAGGGACTCTGGAAAGCTGGCCTTTCGGAAAACTATTGACAGGCATGAATTTGACAGAGAGGAAGCAATGCCACTTTTCTTGTACACTTATTCACACAAACCGTCTTTGTCCAAGGATAATGCTAATTCAGCTTTAGTGCCTGTTCGTGATGGTCTATCAATCCTTTCCAAAAGTCCAAATCCCGCATTTCATTTCCAGGAAACTCGGAAGAATGGACGCAGTACCAGGAGATCTGGGCAGAGTGGTGACTTTTTTCACTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

24.9

Weight (kDa)

5.22

Isoelectric Point (pI)

48.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 585
AcsI RAATTY 1 cut(s) 449
AfaI GTAC 3 cut(s) 203, 485, 625
AfiI CCNNNNNNNGG 2 cut(s) 32, 33
AgsI TTSAA 1 cut(s) 352
AjnI CCWGG 3 cut(s) 93, 597, 626
AluBI AGCT 6 cut(s) 114, 179, 215, 304, 418, 533
AluI AGCT 6 cut(s) 114, 179, 215, 304, 418, 533
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 4 cut(s) 93, 99, 272, 272
AlwNI CAGNNNCTG 1 cut(s) 299
AoxI GGCC 1 cut(s) 420
ApeKI GCWGC 3 cut(s) 131, 161, 304
ApoI RAATTY 1 cut(s) 449
AsuHPI GGTGA 1 cut(s) 659
BanII GRGCYC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 3 cut(s) 118, 148, 291
BccI CCATC 2 cut(s) 4, 545
BcgI CGANNNNNNTGC 2 cut(s) 297, 331
BciT130I CCWGG 3 cut(s) 95, 599, 628
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 4 cut(s) 93, 99, 272, 272
BfaI CTAG 2 cut(s) 239, 372
BglII AGATCT 1 cut(s) 632
BisI GCNGC 3 cut(s) 132, 162, 305
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 3 cut(s) 133, 163, 306
Bme1390I CCNGG 3 cut(s) 95, 599, 628
BmrFI CCNGG 3 cut(s) 95, 599, 628
BmsI GCATC 1 cut(s) 233
BpmI CTGGAG 1 cut(s) 77
Bpu1102I GCTNAGC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 130
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 63, 513
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 33
Bse3DI GCAATG 1 cut(s) 474
BseBI CCWGG 3 cut(s) 95, 599, 628
BseDI CCNNGG 2 cut(s) 63, 513
BseGI GGATG 1 cut(s) 248
BseLI CCNNNNNNNGG 2 cut(s) 32, 33
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 1 cut(s) 291
BseXI GCAGC 3 cut(s) 118, 148, 291
BshFI GGCC 1 cut(s) 422
BsiHKAI GWGCWC 1 cut(s) 116
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 2 cut(s) 32, 33
BsmAI GTCTC 4 cut(s) 93, 99, 272, 272
BsmFI GGGAC 1 cut(s) 419
BsnI GGCC 1 cut(s) 422
Bso31I GGTCTC 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 116
Bsp1407I TGTACA 1 cut(s) 483
Bsp143I GATC 2 cut(s) 232, 632
Bsp1720I GCTNAGC 1 cut(s) 300
BspACI CCGC 1 cut(s) 585
BspANI GGCC 1 cut(s) 422
BspCNI CTCAG 1 cut(s) 292
BspHI TCATGA 1 cut(s) 662
BspTNI GGTCTC 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 474
BsrGI TGTACA 1 cut(s) 483
BssECI CCNNGG 2 cut(s) 63, 513
BssMI GATC 2 cut(s) 232, 632
BssT1I CCWWGG 2 cut(s) 63, 513
Bst2UI CCWGG 3 cut(s) 95, 599, 628
Bst4CI ACNGT 3 cut(s) 143, 226, 504
BstAUI TGTACA 1 cut(s) 483
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 2 cut(s) 101, 300
BstF5I GGATG 1 cut(s) 248
BstKTI GATC 2 cut(s) 235, 635
BstMAI GTCTC 4 cut(s) 93, 99, 272, 272
BstMBI GATC 2 cut(s) 232, 632
BstMWI GCNNNNNNNGC 1 cut(s) 530
BstNI CCWGG 3 cut(s) 95, 599, 628
BstSCI CCNGG 3 cut(s) 93, 597, 626
BstV1I GCAGC 3 cut(s) 118, 148, 291
BstX2I RGATCY 1 cut(s) 632
BstYI RGATCY 1 cut(s) 632
BsuRI GGCC 1 cut(s) 422
BtsCI GGATG 1 cut(s) 248
Cac8I GCNNGC 1 cut(s) 420
CaiI CAGNNNCTG 1 cut(s) 299
CciI TCATGA 1 cut(s) 662
CseI GACGC 2 cut(s) 305, 627
Csp6I GTAC 3 cut(s) 202, 484, 624
CspCI CAANNNNNGTGG 2 cut(s) 462, 497
CviAII CATG 2 cut(s) 446, 663
CviJI RGCY 8 cut(s) 114, 161, 179, 215, 304, 418, 422, 533
CviKI_1 RGCY 8 cut(s) 114, 161, 179, 215, 304, 418, 422, 533
CviQI GTAC 3 cut(s) 202, 484, 624
DdeI CTNAG 2 cut(s) 101, 300
DpnI GATC 2 cut(s) 234, 634
DpnII GATC 2 cut(s) 232, 632
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 2 cut(s) 63, 513
Eco24I GRGCYC 1 cut(s) 116
Eco31I GGTCTC 1 cut(s) 272
Eco53kI GAGCTC 1 cut(s) 114
EcoICRI GAGCTC 1 cut(s) 114
EcoRII CCWGG 3 cut(s) 93, 597, 626
EcoT14I CCWWGG 2 cut(s) 63, 513
EcoT38I GRGCYC 1 cut(s) 116
ErhI CCWWGG 2 cut(s) 63, 513
FaeI CATG 2 cut(s) 449, 666
FaiI YATR 7 cut(s) 23, 129, 206, 208, 335, 447, 664
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FaqI GGGAC 1 cut(s) 419
FatI CATG 2 cut(s) 445, 662
FauI CCCGC 1 cut(s) 592
FauNDI CATATG 1 cut(s) 206
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 3 cut(s) 132, 162, 305
FokI GGATG 1 cut(s) 255
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 3 cut(s) 132, 162, 305
FspBI CTAG 2 cut(s) 239, 372
GluI GCNGC 3 cut(s) 132, 162, 305
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 1 cut(s) 422
HgaI GACGC 2 cut(s) 305, 627
Hin1II CATG 2 cut(s) 449, 666
HinfI GANTC 5 cut(s) 47, 59, 146, 309, 407
HphI GGTGA 1 cut(s) 659
Hpy166II GTNNAC 2 cut(s) 76, 486
Hpy188I TCNGA 5 cut(s) 52, 277, 295, 429, 609
Hpy188III TCNNGA 4 cut(s) 372, 411, 548, 663
Hpy8I GTNNAC 2 cut(s) 76, 486
HpyAV CCTTC 2 cut(s) 47, 163
HpyCH4III ACNGT 3 cut(s) 143, 226, 504
HpyCH4V TGCA 1 cut(s) 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 530
HpyF3I CTNAG 2 cut(s) 101, 300
Hsp92II CATG 2 cut(s) 449, 666
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 2 cut(s) 232, 632
LmnI GCTCC 1 cut(s) 119
Lsp1109I GCAGC 3 cut(s) 118, 148, 291
LweI GCATC 1 cut(s) 233
MaeI CTAG 2 cut(s) 239, 372
MaeIII GTNAC 2 cut(s) 328, 647
MalI GATC 2 cut(s) 234, 634
MboI GATC 2 cut(s) 232, 632
MboII GAAGA 5 cut(s) 19, 56, 340, 407, 622
MfeI CAATTG 1 cut(s) 313
MflI RGATCY 1 cut(s) 632
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 4 cut(s) 313, 352, 449, 526
MlyI GAGTC 2 cut(s) 68, 401
MnlI CCTC 2 cut(s) 329, 454
MseI TTAA 1 cut(s) 261
MspR9I CCNGG 3 cut(s) 95, 599, 628
MunI CAATTG 1 cut(s) 313
MvaI CCWGG 3 cut(s) 95, 599, 628
MwoI GCNNNNNNNGC 1 cut(s) 530
NdeI CATATG 1 cut(s) 206
NdeII GATC 2 cut(s) 232, 632
NlaIII CATG 2 cut(s) 449, 666
NmuCI GTSAC 1 cut(s) 647
PagI TCATGA 1 cut(s) 662
PfeI GAWTC 3 cut(s) 47, 146, 309
PfoI TCCNGGA 2 cut(s) 93, 597
PkrI GCNGC 3 cut(s) 133, 163, 306
PleI GAGTC 2 cut(s) 67, 401
PpsI GAGTC 2 cut(s) 67, 401
Psp124BI GAGCTC 1 cut(s) 116
Psp6I CCWGG 3 cut(s) 93, 597, 626
PspGI CCWGG 3 cut(s) 93, 597, 626
PstNI CAGNNNCTG 1 cut(s) 299
PsuI RGATCY 1 cut(s) 632
RsaI GTAC 3 cut(s) 203, 485, 625
RsaNI GTAC 3 cut(s) 202, 484, 624
SacI GAGCTC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 3 cut(s) 132, 162, 305
Sau3AI GATC 2 cut(s) 232, 632
SchI GAGTC 2 cut(s) 68, 401
ScrFI CCNGG 3 cut(s) 95, 599, 628
SduI GDGCHC 1 cut(s) 116
SetI ASST 8 cut(s) 116, 155, 181, 217, 261, 306, 420, 535
SfaNI GCATC 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
Sse9I AATT 4 cut(s) 313, 352, 449, 526
SsiI CCGC 1 cut(s) 585
SspMI CTAG 2 cut(s) 239, 372
SstI GAGCTC 1 cut(s) 116
StyD4I CCNGG 3 cut(s) 93, 597, 626
StyI CCWWGG 2 cut(s) 63, 513
TaaI ACNGT 3 cut(s) 143, 226, 504
TaqI TCGA 1 cut(s) 321
TasI AATT 4 cut(s) 313, 352, 449, 526
TatI WGTACW 2 cut(s) 201, 483
TfiI GAWTC 3 cut(s) 47, 146, 309
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TseFI GTSAC 1 cut(s) 647
TseI GCWGC 3 cut(s) 131, 161, 304
Tsp45I GTSAC 1 cut(s) 647
TspDTI ATGAA 5 cut(s) 113, 345, 408, 462, 581
XapI RAATTY 1 cut(s) 449
XbaI TCTAGA 1 cut(s) 371
XspI CTAG 2 cut(s) 239, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.