Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0013584

Physical Location & Seq

Genomic Coordinates Forward (+)

2421654 .. 2425147

Gene Structure 3494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g03630.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCATTTGATGTAACGAAACTTTTCTCTGTGCTTCCATGCTCATCATCTCTATTTCTCTATATATCACGTGTCTATCTGTATAGTCACAATCTCCGTGTCTCCTTCTCTCGCTCAAAACAAAAGCAAGCCACCCACCCCACTCTAATTGTACCATTATCCCTTTCTCAAAGTTTTCAAGTTTCAAACATGGAGGAGGAGATGCAGAGCAACTCCAAGTCCCCCTCAGGGAGAGGGCAAGAATCAGAGGCAGAGTCTAAGGACATTGTAAGCTTTGATAAGTCTCTTCAGGAACTAAGAGACCTGCGCTCACAACTTCACTATGCTGCTGACTACTGTGAATCAACCTTCCTAAAGACCAAAGAAAAGAAAGTTGTGATGGAAAACACCAAAGAGTACATATGCAGAGCTGTGGTGACTGTTGTCGATCATCTTGGATGCGTTTCTGCCAACCTCAACGGCCTCATTTCCGAAACTAACACATTTTCGGAGGCTGAGATTCGAATTGACTGCCTCAAACAAAGGATGTTCTTATGTGAACAATACACCCACAAATTTTCTCTGCCTAGATTCCGATGGAAGGACATTATCCCGCAGAATAAAGCACGGTTTTTATCTGCAGCTACCGAAGAAGCTGAGAAGCCCAATGAAGATTTGAGGGCTATTCCAGGAAATCCAGCCTCTCGTAAAACCATTGACAAGCAAGAACTTGGCAAAGATGTAGCAATGCCACTTGTGTTGTACACCTCGTCTCACAAACGGTCATTGTCCAAGGACGAAAACAATTCAGTTTTAGTGCCGGTTCGTGATGGCCTCTCAATCCTGTCTAGAGGTCCAAACCCTACATTTCATTTCCAGGAATCTCGGAAGATTACTGGCCGCCTCAAGAAATCTGGGCACAGTAATGACATCTTGGCACTCATTAGACGAGCAAAAAGAACGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

316

Amino Acids

35.78

Weight (kDa)

9.33

Isoelectric Point (pI)

54.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013584)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04380
malus_domestica	MD02G1043600.v1.1 MD15G1182100.v1.1
prunus_persica	Prupe.7G233400_v2.0.a1
pyrus_communis	pycom02g03630 pycom15g16440
rosa_chinensis	RchiOBHm_Chr2g0090031
rosa_laevigata	RLG00000016070 RLG00000016073 RLG00000016077
rosa_roxburghii	Rroxscaffold_2G00151460
rosa_rugosa	Rorug02G0004700 Rorug02G0004700
rosa_samantha	Rh2AG050000 Rh2BG048800 Rh2CG051000 Rh2DG050200
rosa_wichuraiana	Rw2G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	312
AciI	CCGC	2 cut(s)	593, 880
AcoI	YGGCCR	1 cut(s)	877
AcsI	RAATTY	1 cut(s)	554
AcuI	CTGAAG	1 cut(s)	272
AcvI	CACGTG	1 cut(s)	71
AfaI	GTAC	3 cut(s)	153, 398, 743
AfiI	CCNNNNNNNGG	2 cut(s)	228, 580
AflIII	ACRYGT	1 cut(s)	70
AgsI	TTSAA	2 cut(s)	179, 186
AjnI	CCWGG	2 cut(s)	667, 855
AluBI	AGCT	4 cut(s)	273, 410, 623, 635
AluI	AGCT	4 cut(s)	273, 410, 623, 635
Alw26I	GTCTC	4 cut(s)	106, 288, 294, 756
AoxI	GGCC	3 cut(s)	460, 811, 877
ApeKI	GCWGC	2 cut(s)	326, 620
ApoI	RAATTY	1 cut(s)	554
Asp700I	GAANNNNTTC	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	1 cut(s)	833
AsuHPI	GGTGA	1 cut(s)	427
AsuII	TTCGAA	1 cut(s)	502
AvaII	GGWCC	1 cut(s)	833
AxyI	CCTNAGG	1 cut(s)	226
BaeGI	GKGCMC	1 cut(s)	900
BbrPI	CACGTG	1 cut(s)	71
BbvI	GCAGC	2 cut(s)	313, 632
BccI	CCATC	3 cut(s)	373, 570, 803
BceAI	ACGGC	1 cut(s)	475
BcgI	CGANNNNNNTGC	2 cut(s)	492, 526
BciT130I	CCWGG	2 cut(s)	669, 857
BcoDI	GTCTC	4 cut(s)	106, 288, 294, 756
BfaI	CTAG	2 cut(s)	567, 828
BfmI	CTRYAG	1 cut(s)	618
BfuAI	ACCTGC	1 cut(s)	312
BisI	GCNGC	3 cut(s)	327, 621, 880
BlsI	GCNGC	3 cut(s)	328, 622, 881
Bme1390I	CCNGG	2 cut(s)	669, 857
Bme18I	GGWCC	1 cut(s)	833
BmgT120I	GGNCC	1 cut(s)	833
BmrFI	CCNGG	2 cut(s)	669, 857
BmsI	GCATC	2 cut(s)	192, 428
BoxI	GACNNNNGTC	1 cut(s)	422
Bpu14I	TTCGAA	1 cut(s)	502
BpuEI	CTTGAG	1 cut(s)	869
BsaAI	YACGTR	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	771
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 580
Bse118I	RCCGGY	1 cut(s)	799
Bse1I	ACTGG	1 cut(s)	880
Bse21I	CCTNAGG	1 cut(s)	226
Bse3DI	GCAATG	1 cut(s)	732
BseBI	CCWGG	2 cut(s)	669, 857
BseDI	CCNNGG	1 cut(s)	771
BseGI	GGATG	2 cut(s)	443, 531
BseLI	CCNNNNNNNGG	2 cut(s)	228, 580
BseMI	GCAATG	1 cut(s)	732
BseMII	CTCAG	3 cut(s)	240, 486, 627
BseNI	ACTGG	1 cut(s)	880
BseRI	GAGGAG	2 cut(s)	209, 212
BseSI	GKGCMC	1 cut(s)	900
BseXI	GCAGC	2 cut(s)	313, 632
BshFI	GGCC	3 cut(s)	462, 813, 879
BsiSI	CCGG	1 cut(s)	800
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	2 cut(s)	228, 580
BsmAI	GTCTC	4 cut(s)	106, 288, 294, 756
BsmBI	CGTCTC	1 cut(s)	756
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	3 cut(s)	462, 813, 879
Bso31I	GGTCTC	1 cut(s)	294
Bsp119I	TTCGAA	1 cut(s)	502
Bsp1286I	GDGCHC	1 cut(s)	900
Bsp1407I	TGTACA	1 cut(s)	741
Bsp143I	GATC	1 cut(s)	427
BspACI	CCGC	2 cut(s)	593, 880
BspANI	GGCC	3 cut(s)	462, 813, 879
BspCNI	CTCAG	3 cut(s)	239, 487, 628
BspMAI	CTGCAG	1 cut(s)	622
BspMI	ACCTGC	1 cut(s)	312
BspT104I	TTCGAA	1 cut(s)	502
BspTNI	GGTCTC	1 cut(s)	294
BsrDI	GCAATG	1 cut(s)	732
BsrFI	RCCGGY	1 cut(s)	799
BsrGI	TGTACA	1 cut(s)	741
BsrI	ACTGG	1 cut(s)	880
BssAI	RCCGGY	1 cut(s)	799
BssECI	CCNNGG	1 cut(s)	771
BssMI	GATC	1 cut(s)	427
BssT1I	CCWWGG	1 cut(s)	771
Bst2UI	CCWGG	2 cut(s)	669, 857
Bst4CI	ACNGT	6 cut(s)	338, 421, 609, 762, 902, 943
Bst6I	CTCTTC	1 cut(s)	291
BstAUI	TGTACA	1 cut(s)	741
BstBAI	YACGTR	1 cut(s)	71
BstBI	TTCGAA	1 cut(s)	502
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	5 cut(s)	226, 258, 296, 495, 636
BstF5I	GGATG	2 cut(s)	443, 531
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	1 cut(s)	430
BstMAI	GTCTC	4 cut(s)	106, 288, 294, 756
BstMBI	GATC	1 cut(s)	427
BstNI	CCWGG	2 cut(s)	669, 857
BstPAI	GACNNNNGTC	1 cut(s)	422
BstSCI	CCNGG	2 cut(s)	667, 855
BstSFI	CTRYAG	1 cut(s)	618
BstSLI	GKGCMC	1 cut(s)	900
BstV1I	GCAGC	2 cut(s)	313, 632
Bsu36I	CCTNAGG	1 cut(s)	226
BsuRI	GGCC	3 cut(s)	462, 813, 879
BtsCI	GGATG	2 cut(s)	443, 531
BveI	ACCTGC	1 cut(s)	312
Cac8I	GCNNGC	1 cut(s)	129
CfoI	GCGC	1 cut(s)	309
Cfr10I	RCCGGY	1 cut(s)	799
Cfr13I	GGNCC	1 cut(s)	833
Csp6I	GTAC	3 cut(s)	152, 397, 742
CspCI	CAANNNNNGTGG	4 cut(s)	130, 165, 720, 755
CviAII	CATG	2 cut(s)	39, 190
CviQI	GTAC	3 cut(s)	152, 397, 742
DdeI	CTNAG	5 cut(s)	226, 258, 296, 495, 636
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	877
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	771
Eco31I	GGTCTC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	833
Eco57I	CTGAAG	1 cut(s)	272
Eco72I	CACGTG	1 cut(s)	71
Eco81I	CCTNAGG	1 cut(s)	226
EcoRII	CCWGG	2 cut(s)	667, 855
EcoT14I	CCWWGG	1 cut(s)	771
ErhI	CCWWGG	1 cut(s)	771
Esp3I	CGTCTC	1 cut(s)	756
FaeI	CATG	2 cut(s)	42, 193
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	2 cut(s)	38, 189
FauI	CCCGC	1 cut(s)	600
FauNDI	CATATG	1 cut(s)	401
Fnu4HI	GCNGC	3 cut(s)	327, 621, 880
FokI	GGATG	2 cut(s)	450, 538
Fsp4HI	GCNGC	3 cut(s)	327, 621, 880
FspBI	CTAG	2 cut(s)	567, 828
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	3 cut(s)	327, 621, 880
HaeIII	GGCC	3 cut(s)	462, 813, 879
HapII	CCGG	1 cut(s)	800
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	2 cut(s)	42, 193
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HindIII	AAGCTT	1 cut(s)	271
HinfI	GANTC	6 cut(s)	242, 254, 341, 499, 570, 860
HpaII	CCGG	1 cut(s)	800
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	2 cut(s)	539, 744
Hpy188I	TCNGA	5 cut(s)	247, 472, 490, 575, 867
Hpy188III	TCNNGA	4 cut(s)	290, 806, 828, 886
Hpy8I	GTNNAC	2 cut(s)	539, 744
HpyAV	CCTTC	3 cut(s)	115, 358, 574
HpyCH4III	ACNGT	6 cut(s)	338, 421, 609, 762, 902, 943
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	3 cut(s)	205, 405, 620
HpyF3I	CTNAG	5 cut(s)	226, 258, 296, 495, 636
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	2 cut(s)	42, 193
HspAI	GCGC	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	427
Lsp1109I	GCAGC	2 cut(s)	313, 632
LweI	GCATC	2 cut(s)	192, 428
MaeI	CTAG	2 cut(s)	567, 828
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	3 cut(s)	13, 86, 415
MalI	GATC	1 cut(s)	429
MboI	GATC	1 cut(s)	427
MboII	GAAGA	4 cut(s)	278, 641, 662, 880
MhlI	GDGCHC	1 cut(s)	900
MluCI	AATT	4 cut(s)	147, 504, 554, 784
MlyI	GAGTC	1 cut(s)	263
MroXI	GAANNNNTTC	1 cut(s)	23
MslI	CAYNNNNRTG	1 cut(s)	903
MspI	CCGG	1 cut(s)	800
MspR9I	CCNGG	2 cut(s)	669, 857
MvaI	CCWGG	2 cut(s)	669, 857
NdeI	CATATG	1 cut(s)	401
NdeII	GATC	1 cut(s)	427
NlaIII	CATG	2 cut(s)	42, 193
NmuCI	GTSAC	2 cut(s)	86, 415
NspV	TTCGAA	1 cut(s)	502
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	5 cut(s)	242, 341, 499, 570, 860
PfoI	TCCNGGA	2 cut(s)	667, 855
PkrI	GCNGC	3 cut(s)	328, 622, 881
PleI	GAGTC	1 cut(s)	262
PmaCI	CACGTG	1 cut(s)	71
PmlI	CACGTG	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	262
Ppu21I	YACGTR	1 cut(s)	71
PshAI	GACNNNNGTC	1 cut(s)	422
Psp6I	CCWGG	2 cut(s)	667, 855
PspCI	CACGTG	1 cut(s)	71
PspGI	CCWGG	2 cut(s)	667, 855
PspPI	GGNCC	1 cut(s)	833
PstI	CTGCAG	1 cut(s)	622
RsaI	GTAC	3 cut(s)	153, 398, 743
RsaNI	GTAC	3 cut(s)	152, 397, 742
RseI	CAYNNNNRTG	1 cut(s)	903
SatI	GCNGC	3 cut(s)	327, 621, 880
Sau3AI	GATC	1 cut(s)	427
Sau96I	GGNCC	1 cut(s)	833
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	2 cut(s)	669, 857
SduI	GDGCHC	1 cut(s)	900
SfaNI	GCATC	2 cut(s)	192, 428
SfcI	CTRYAG	1 cut(s)	618
SfuI	TTCGAA	1 cut(s)	502
SinI	GGWCC	1 cut(s)	833
SmiMI	CAYNNNNRTG	1 cut(s)	903
SmlI	CTYRAG	1 cut(s)	884
SmoI	CTYRAG	1 cut(s)	884
Sse9I	AATT	4 cut(s)	147, 504, 554, 784
SsiI	CCGC	2 cut(s)	593, 880
SspMI	CTAG	2 cut(s)	567, 828
StyD4I	CCNGG	2 cut(s)	667, 855
StyI	CCWWGG	1 cut(s)	771
TaaI	ACNGT	6 cut(s)	338, 421, 609, 762, 902, 943
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	2 cut(s)	426, 502
TasI	AATT	4 cut(s)	147, 504, 554, 784
TatI	WGTACW	2 cut(s)	396, 741
TauI	GCSGC	1 cut(s)	882
TfiI	GAWTC	5 cut(s)	242, 341, 499, 570, 860
TseFI	GTSAC	2 cut(s)	86, 415
TseI	GCWGC	2 cut(s)	326, 620
Tsp45I	GTSAC	2 cut(s)	86, 415
TspDTI	ATGAA	2 cut(s)	663, 839
TspGWI	ACGGA	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	833
XapI	RAATTY	1 cut(s)	554
XbaI	TCTAGA	1 cut(s)	827
XmnI	GAANNNNTTC	1 cut(s)	23
XspI	CTAG	2 cut(s)	567, 828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.