Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013584

Physical Location & Seq

Genomic Coordinates Forward (+)

11525297 .. 11527538

Gene Structure 2242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g16440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGAGGAGAAGATGCAGAACAACTCTAAACCCTCCTCGGAGCAAGATGCAGAAGCAGAGTCTAAGGACGTTCCAAACATGGAGGAGAAGATGCAGAACATCTCTAAACCCTCCTCAGGGCAAGATGCAGAAGCAAAGTCTAAGGACATTGGAAGCTTTCATAATTCTCTTCAGGAACTGAGAGACCTGCGCTCTCAACTTCACTATGCTGCAGACTACTGTGAATCAACCTTTTTGAACACCAAAGAAAAGAAAGTAGTGATGGAAAACACCAAAGAGTACATATGCAGAGCTGTGGTGACTGTTGTTGATCATCTCGGATGCGTCTCCGCCAACCTTAACAGCATCGTTTCCAAAACTAACGCATTTTCGGAGGCTGAGACTCGAATTGATTGCCTCAAACAAAGGATGTTCTTATGTGAACAATACACCCATAAGTTTGCTCTGCCTAGAGTCCGATGGAGGGAGATTATCCCGCGGCATAATGCACGTTTTTTATCTGCAGCTACCAGAGAAGCTGAGAAACCCAATGATACCAGAGAAGCTGAGAAATCCAATGAAGATTCGAGGGATATTCCTAGAAACCCAGCCTCTCATAAAACCACTGACAAGCAAGAATCTGACAGAGATGTAGCAATGCCGCTTTTGTTGTGCACATCGTCTCACAAACCGTCTTTGCCCAAGGGCGAAAACAATTCAGCTTTAGTGCCGGTTCATGATGGCCTCTCAATCCTGTCTAGGGGTCCAAACCTTACCTTTCACTTCCAGGAATCTCGGAAGATTAATGGACGCCTCAAGAAATCTGGGCACGGTAATGACATCTTGTCGCTCATCAGACGAGCCAAAAGAAGAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

286

Amino Acids

32.33

Weight (kDa)

8.81

Isoelectric Point (pI)

53.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013584)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04380
malus_domestica	MD02G1043600.v1.1 MD15G1182100.v1.1
prunus_persica	Prupe.7G233400_v2.0.a1
pyrus_communis	pycom02g03630 pycom15g16440
rosa_chinensis	RchiOBHm_Chr2g0090031
rosa_laevigata	RLG00000016070 RLG00000016073 RLG00000016077
rosa_roxburghii	Rroxscaffold_2G00151460
rosa_rugosa	Rorug02G0004700 Rorug02G0004700
rosa_samantha	Rh2AG050000 Rh2BG048800 Rh2CG051000 Rh2DG050200
rosa_wichuraiana	Rw2G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	195
AccII	CGCG	1 cut(s)	478
AciI	CCGC	4 cut(s)	330, 476, 478, 641
AcuI	CTGAAG	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	790
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	4 cut(s)	116, 117, 463, 739
AgsI	TTSAA	1 cut(s)	238
AhdI	GACNNNNNGTC	1 cut(s)	823
AjnI	CCWGG	1 cut(s)	765
AluBI	AGCT	6 cut(s)	156, 293, 506, 518, 545, 701
AluI	AGCT	6 cut(s)	156, 293, 506, 518, 545, 701
Alw21I	GWGCWC	1 cut(s)	656
Alw26I	GTCTC	4 cut(s)	177, 331, 374, 666
Alw44I	GTGCAC	1 cut(s)	652
AlwNI	CAGNNNCTG	1 cut(s)	178
AoxI	GGCC	1 cut(s)	721
ApaLI	GTGCAC	1 cut(s)	652
ApeKI	GCWGC	2 cut(s)	209, 503
AseI	ATTAAT	1 cut(s)	783
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	1 cut(s)	743
AsuHPI	GGTGA	1 cut(s)	310
AvaII	GGWCC	1 cut(s)	743
AxyI	CCTNAGG	1 cut(s)	115
BaeGI	GKGCMC	2 cut(s)	656, 810
Bbv12I	GWGCWC	1 cut(s)	656
BbvI	GCAGC	2 cut(s)	196, 515
BccI	CCATC	3 cut(s)	256, 453, 713
BcgI	CGANNNNNNTGC	2 cut(s)	375, 409
BciT130I	CCWGG	1 cut(s)	767
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	4 cut(s)	177, 331, 374, 666
BfaI	CTAG	3 cut(s)	450, 579, 738
BfmI	CTRYAG	2 cut(s)	210, 501
BfuAI	ACCTGC	1 cut(s)	195
BisI	GCNGC	4 cut(s)	210, 479, 504, 641
BlsI	GCNGC	4 cut(s)	211, 480, 505, 642
Bme1390I	CCNGG	1 cut(s)	767
Bme18I	GGWCC	1 cut(s)	743
BmeRI	GACNNNNNGTC	1 cut(s)	823
BmgT120I	GGNCC	1 cut(s)	743
BmiI	GGNNCC	1 cut(s)	744
BmrFI	CCNGG	1 cut(s)	767
BmsI	GCATC	6 cut(s)	3, 37, 81, 115, 311, 354
BpuEI	CTTGAG	1 cut(s)	779
BsaHI	GRCGYC	1 cut(s)	790
BsaI	GGTCTC	1 cut(s)	177
BsaJI	CCNNGG	3 cut(s)	36, 476, 681
Bsc4I	CCNNNNNNNGG	4 cut(s)	116, 117, 463, 739
Bse118I	RCCGGY	1 cut(s)	709
Bse21I	CCTNAGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	642
BseBI	CCWGG	1 cut(s)	767
BseDI	CCNNGG	3 cut(s)	36, 476, 681
BseGI	GGATG	2 cut(s)	326, 414
BseLI	CCNNNNNNNGG	4 cut(s)	116, 117, 463, 739
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	5 cut(s)	129, 170, 369, 510, 537
BseRI	GAGGAG	4 cut(s)	20, 25, 98, 103
BseSI	GKGCMC	2 cut(s)	656, 810
BseXI	GCAGC	2 cut(s)	196, 515
BseYI	CCCAGC	1 cut(s)	586
Bsh1236I	CGCG	1 cut(s)	478
BshFI	GGCC	1 cut(s)	723
BsiHKAI	GWGCWC	1 cut(s)	656
BsiSI	CCGG	1 cut(s)	710
BslI	CCNNNNNNNGG	4 cut(s)	116, 117, 463, 739
BsmAI	GTCTC	4 cut(s)	177, 331, 374, 666
BsmBI	CGTCTC	2 cut(s)	331, 666
BsnI	GGCC	1 cut(s)	723
Bso31I	GGTCTC	1 cut(s)	177
Bsp1286I	GDGCHC	2 cut(s)	656, 810
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	4 cut(s)	330, 476, 478, 641
BspANI	GGCC	1 cut(s)	723
BspCNI	CTCAG	5 cut(s)	128, 171, 370, 511, 538
BspFNI	CGCG	1 cut(s)	478
BspHI	TCATGA	1 cut(s)	715
BspLI	GGNNCC	1 cut(s)	744
BspMAI	CTGCAG	2 cut(s)	214, 505
BspMI	ACCTGC	1 cut(s)	195
BspTNI	GGTCTC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	642
BsrFI	RCCGGY	1 cut(s)	709
BssAI	RCCGGY	1 cut(s)	709
BssECI	CCNNGG	3 cut(s)	36, 476, 681
BssMI	GATC	1 cut(s)	310
BssNI	GRCGYC	1 cut(s)	790
BssT1I	CCWWGG	1 cut(s)	681
Bst2UI	CCWGG	1 cut(s)	767
Bst4CI	ACNGT	4 cut(s)	221, 304, 672, 812
Bst6I	CTCTTC	2 cut(s)	174, 844
BstACI	GRCGYC	1 cut(s)	790
BstDEI	CTNAG	7 cut(s)	63, 115, 141, 179, 378, 519, 546
BstDSI	CCRYGG	1 cut(s)	476
BstF5I	GGATG	2 cut(s)	326, 414
BstFNI	CGCG	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	4 cut(s)	177, 331, 374, 666
BstMBI	GATC	1 cut(s)	310
BstNI	CCWGG	1 cut(s)	767
BstSCI	CCNGG	1 cut(s)	765
BstSFI	CTRYAG	2 cut(s)	210, 501
BstSLI	GKGCMC	2 cut(s)	656, 810
BstUI	CGCG	1 cut(s)	478
BstV1I	GCAGC	2 cut(s)	196, 515
Bsu36I	CCTNAGG	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	723
BtgI	CCRYGG	1 cut(s)	476
BtsCI	GGATG	2 cut(s)	326, 414
BtsIMutI	CAGTG	1 cut(s)	603
BveI	ACCTGC	1 cut(s)	195
CaiI	CAGNNNCTG	1 cut(s)	178
CciI	TCATGA	1 cut(s)	715
CfoI	GCGC	1 cut(s)	192
Cfr10I	RCCGGY	1 cut(s)	709
Cfr13I	GGNCC	1 cut(s)	743
Cfr42I	CCGCGG	1 cut(s)	479
CseI	GACGC	2 cut(s)	313, 798
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	2 cut(s)	79, 716
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	7 cut(s)	63, 115, 141, 179, 378, 519, 546
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
DriI	GACNNNNNGTC	1 cut(s)	823
Eam1104I	CTCTTC	2 cut(s)	174, 844
Eam1105I	GACNNNNNGTC	1 cut(s)	823
EarI	CTCTTC	2 cut(s)	174, 844
EciI	GGCGGA	1 cut(s)	319
Eco130I	CCWWGG	1 cut(s)	681
Eco31I	GGTCTC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	743
Eco57I	CTGAAG	1 cut(s)	155
Eco81I	CCTNAGG	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	765
EcoT14I	CCWWGG	1 cut(s)	681
ErhI	CCWWGG	1 cut(s)	681
Esp3I	CGTCTC	2 cut(s)	331, 666
FaeI	CATG	2 cut(s)	82, 719
FatI	CATG	2 cut(s)	78, 715
FauI	CCCGC	1 cut(s)	483
FauNDI	CATATG	1 cut(s)	284
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	4 cut(s)	210, 479, 504, 641
FokI	GGATG	2 cut(s)	333, 421
Fsp4HI	GCNGC	4 cut(s)	210, 479, 504, 641
FspBI	CTAG	3 cut(s)	450, 579, 738
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	4 cut(s)	210, 479, 504, 641
GsaI	CCCAGC	1 cut(s)	590
HaeIII	GGCC	1 cut(s)	723
HapII	CCGG	1 cut(s)	710
HgaI	GACGC	2 cut(s)	313, 798
HhaI	GCGC	1 cut(s)	192
Hin1I	GRCGYC	1 cut(s)	790
Hin1II	CATG	2 cut(s)	82, 719
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	7 cut(s)	59, 224, 382, 453, 563, 617, 770
HpaII	CCGG	1 cut(s)	710
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	2 cut(s)	422, 654
Hpy188I	TCNGA	7 cut(s)	40, 320, 373, 458, 622, 777, 836
Hpy188III	TCNNGA	3 cut(s)	173, 716, 796
Hpy8I	GTNNAC	2 cut(s)	422, 654
HpyCH4III	ACNGT	4 cut(s)	221, 304, 672, 812
HpyCH4IV	ACGT	2 cut(s)	69, 490
HpyCH4V	TGCA	9 cut(s)	16, 50, 94, 128, 212, 288, 488, 503, 654
HpyF3I	CTNAG	7 cut(s)	63, 115, 141, 179, 378, 519, 546
HpySE526I	ACGT	2 cut(s)	69, 490
Hsp92I	GRCGYC	1 cut(s)	790
Hsp92II	CATG	2 cut(s)	82, 719
HspAI	GCGC	1 cut(s)	190
Ksp22I	TGATCA	1 cut(s)	310
KspI	CCGCGG	1 cut(s)	479
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	1 cut(s)	40
Lsp1109I	GCAGC	2 cut(s)	196, 515
LweI	GCATC	6 cut(s)	3, 37, 81, 115, 311, 354
MaeI	CTAG	3 cut(s)	450, 579, 738
MaeII	ACGT	2 cut(s)	69, 490
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	5 cut(s)	22, 100, 161, 572, 790
MhlI	GDGCHC	2 cut(s)	656, 810
MluCI	AATT	3 cut(s)	163, 387, 694
MlyI	GAGTC	3 cut(s)	68, 376, 462
MseI	TTAA	2 cut(s)	339, 783
MslI	CAYNNNNRTG	1 cut(s)	813
MspA1I	CMGCKG	1 cut(s)	478
MspI	CCGG	1 cut(s)	710
MspR9I	CCNGG	1 cut(s)	767
MvaI	CCWGG	1 cut(s)	767
MvnI	CGCG	1 cut(s)	478
NdeI	CATATG	1 cut(s)	284
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	2 cut(s)	82, 719
NlaIV	GGNNCC	1 cut(s)	744
NmuCI	GTSAC	1 cut(s)	298
PagI	TCATGA	1 cut(s)	715
PfeI	GAWTC	4 cut(s)	224, 563, 617, 770
PfoI	TCCNGGA	1 cut(s)	765
PkrI	GCNGC	4 cut(s)	211, 480, 505, 642
PleI	GAGTC	3 cut(s)	67, 376, 461
PpsI	GAGTC	3 cut(s)	67, 376, 461
PshBI	ATTAAT	1 cut(s)	783
Psp6I	CCWGG	1 cut(s)	765
PspFI	CCCAGC	1 cut(s)	586
PspGI	CCWGG	1 cut(s)	765
PspN4I	GGNNCC	1 cut(s)	744
PspPI	GGNCC	1 cut(s)	743
PstI	CTGCAG	2 cut(s)	214, 505
PstNI	CAGNNNCTG	1 cut(s)	178
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	813
SacII	CCGCGG	1 cut(s)	479
SaqAI	TTAA	2 cut(s)	339, 783
SatI	GCNGC	4 cut(s)	210, 479, 504, 641
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	1 cut(s)	743
SchI	GAGTC	3 cut(s)	68, 376, 462
ScrFI	CCNGG	1 cut(s)	767
SduI	GDGCHC	2 cut(s)	656, 810
SfaNI	GCATC	6 cut(s)	3, 37, 81, 115, 311, 354
SfcI	CTRYAG	2 cut(s)	210, 501
Sfr303I	CCGCGG	1 cut(s)	479
SgrBI	CCGCGG	1 cut(s)	479
SinI	GGWCC	1 cut(s)	743
SmiMI	CAYNNNNRTG	1 cut(s)	813
SmlI	CTYRAG	1 cut(s)	794
SmoI	CTYRAG	1 cut(s)	794
Sse9I	AATT	3 cut(s)	163, 387, 694
SsiI	CCGC	4 cut(s)	330, 476, 478, 641
SspMI	CTAG	3 cut(s)	450, 579, 738
StyD4I	CCNGG	1 cut(s)	765
StyI	CCWWGG	1 cut(s)	681
TaaI	ACNGT	4 cut(s)	221, 304, 672, 812
TaiI	ACGT	2 cut(s)	72, 493
TaqI	TCGA	2 cut(s)	385, 566
TasI	AATT	3 cut(s)	163, 387, 694
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	2 cut(s)	481, 643
TfiI	GAWTC	4 cut(s)	224, 563, 617, 770
Tru1I	TTAA	2 cut(s)	339, 783
Tru9I	TTAA	2 cut(s)	339, 783
TscAI	CASTG	1 cut(s)	610
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	2 cut(s)	209, 503
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	3 cut(s)	149, 573, 704
TspRI	CASTG	1 cut(s)	610
VneI	GTGCAC	1 cut(s)	652
VpaK11BI	GGWCC	1 cut(s)	743
VspI	ATTAAT	1 cut(s)	783
XspI	CTAG	3 cut(s)	450, 579, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.