Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0013584

Physical Location & Seq

Genomic Coordinates Forward (+)

3451880 .. 3454718

Gene Structure 2839 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG048800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAGAAGATGGAGAACTCTATACCCTGTTCAGGGAAGCAAGAAGATTCAGAAGGCGAGTCCAAGGACATTGTGAACTTTGATAAGTCTCTCCAGGAACTAAGAGACTTGAGCTCCCAACTTCATTATGCTGCTGACTACTGTGAATCAACCTTCTTGGCTGCCCAAGAAAAGAGAGCTGTGGTGGAAAACACAAAAGAGTATATATGCAGAGCTGTGATTACTGTTGTTGATCATCTAGGATGCGTTTCTGCTAACCTTAATGGTCTCATTTCCGAGACTAATGAATTTTCAGACGCCGAGCTGCGAATCAATTGCCTCAAACAAAGAATTCTCCTATGTGAACAATTCACCCACAAGCTTGCTCTTACAAGAACTCGATGGCGTGAGACGTTGCCGAGGCATAGCGCGCGTTTCTTATGTGCACCTATCTCTAGAGAAGATGAGAAATCAAATGAAGATATAAGGGATTCAGGAAAGTCGGCCTTTCCGAAAACTATTGACAGGCATGAATTTGACAGAGAGGAAGCAATGCCACTTTTCTTGTACACTTATTCACACAAACCGTCTTTGTCCAAGGATAATGCTAATTCAGCTTTAGGTGACATTATGTTTTCGTATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

23.79

Weight (kDa)

5.33

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013584)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04380
malus_domestica	MD02G1043600.v1.1 MD15G1182100.v1.1
prunus_persica	Prupe.7G233400_v2.0.a1
pyrus_communis	pycom02g03630 pycom15g16440
rosa_chinensis	RchiOBHm_Chr2g0090031
rosa_laevigata	RLG00000016070 RLG00000016073 RLG00000016077
rosa_roxburghii	Rroxscaffold_2G00151460
rosa_rugosa	Rorug02G0004700 Rorug02G0004700
rosa_samantha	Rh2AG050000 Rh2BG048800 Rh2CG051000 Rh2DG050200
rosa_wichuraiana	Rw2G004040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	410, 412
AcsI	RAATTY	3 cut(s)	287, 330, 512
AcyI	GRCGYC	1 cut(s)	297
AfaI	GTAC	1 cut(s)	548
AfiI	CCNNNNNNNGG	2 cut(s)	32, 33
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	6 cut(s)	114, 179, 215, 304, 361, 596
AluI	AGCT	6 cut(s)	114, 179, 215, 304, 361, 596
Alw21I	GWGCWC	2 cut(s)	116, 427
Alw26I	GTCTC	5 cut(s)	93, 99, 272, 272, 383
Alw44I	GTGCAC	1 cut(s)	423
AoxI	GGCC	1 cut(s)	483
ApaLI	GTGCAC	1 cut(s)	423
ApeKI	GCWGC	3 cut(s)	131, 161, 304
ApoI	RAATTY	3 cut(s)	287, 330, 512
AspLEI	GCGC	2 cut(s)	410, 412
AsuHPI	GGTGA	2 cut(s)	343, 614
BaeGI	GKGCMC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	116
Bbv12I	GWGCWC	2 cut(s)	116, 427
BbvI	GCAGC	3 cut(s)	118, 148, 291
BccI	CCATC	2 cut(s)	4, 375
BcgI	CGANNNNNNTGC	2 cut(s)	297, 331
BciT130I	CCWGG	1 cut(s)	95
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	5 cut(s)	93, 99, 272, 272, 383
BfaI	CTAG	2 cut(s)	239, 435
BisI	GCNGC	3 cut(s)	132, 162, 305
BlsI	GCNGC	3 cut(s)	133, 163, 306
Bme1390I	CCNGG	1 cut(s)	95
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	1 cut(s)	233
BpmI	CTGGAG	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	130
BsaHI	GRCGYC	1 cut(s)	297
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	3 cut(s)	63, 398, 576
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 33
Bse3DI	GCAATG	1 cut(s)	537
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	3 cut(s)	63, 398, 576
BseGI	GGATG	1 cut(s)	248
BseLI	CCNNNNNNNGG	2 cut(s)	32, 33
BseMI	GCAATG	1 cut(s)	537
BsePI	GCGCGC	1 cut(s)	408
BseSI	GKGCMC	1 cut(s)	427
BseXI	GCAGC	3 cut(s)	118, 148, 291
Bsh1236I	CGCG	2 cut(s)	410, 412
BshFI	GGCC	1 cut(s)	485
BsiHKAI	GWGCWC	2 cut(s)	116, 427
BslI	CCNNNNNNNGG	2 cut(s)	32, 33
BsmAI	GTCTC	5 cut(s)	93, 99, 272, 272, 383
BsmBI	CGTCTC	1 cut(s)	383
BsnI	GGCC	1 cut(s)	485
Bso31I	GGTCTC	1 cut(s)	272
Bsp1286I	GDGCHC	2 cut(s)	116, 427
Bsp1407I	TGTACA	1 cut(s)	546
Bsp143I	GATC	1 cut(s)	232
BspANI	GGCC	1 cut(s)	485
BspFNI	CGCG	2 cut(s)	410, 412
BspTNI	GGTCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	537
BsrGI	TGTACA	1 cut(s)	546
BssECI	CCNNGG	3 cut(s)	63, 398, 576
BssHII	GCGCGC	1 cut(s)	408
BssMI	GATC	1 cut(s)	232
BssNI	GRCGYC	1 cut(s)	297
BssT1I	CCWWGG	2 cut(s)	63, 576
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	3 cut(s)	143, 226, 567
BstACI	GRCGYC	1 cut(s)	297
BstAUI	TGTACA	1 cut(s)	546
BstC8I	GCNNGC	2 cut(s)	363, 410
BstDEI	CTNAG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	248
BstFNI	CGCG	2 cut(s)	410, 412
BstHHI	GCGC	2 cut(s)	410, 412
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	5 cut(s)	93, 99, 272, 272, 383
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	2 cut(s)	409, 593
BstNI	CCWGG	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	427
BstUI	CGCG	2 cut(s)	410, 412
BstV1I	GCAGC	3 cut(s)	118, 148, 291
BsuRI	GGCC	1 cut(s)	485
BtsCI	GGATG	1 cut(s)	248
Cac8I	GCNNGC	2 cut(s)	363, 410
CfoI	GCGC	2 cut(s)	410, 412
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	547
CspCI	CAANNNNNGTGG	2 cut(s)	525, 560
CviAII	CATG	1 cut(s)	509
CviJI	RGCY	8 cut(s)	114, 161, 179, 215, 304, 361, 485, 596
CviKI_1	RGCY	8 cut(s)	114, 161, 179, 215, 304, 361, 485, 596
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	2 cut(s)	63, 576
Eco24I	GRGCYC	1 cut(s)	116
Eco31I	GGTCTC	1 cut(s)	272
Eco53kI	GAGCTC	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	330
EcoRII	CCWGG	1 cut(s)	93
EcoT14I	CCWWGG	2 cut(s)	63, 576
EcoT38I	GRGCYC	1 cut(s)	116
ErhI	CCWWGG	2 cut(s)	63, 576
Esp3I	CGTCTC	1 cut(s)	383
FaeI	CATG	1 cut(s)	512
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FatI	CATG	1 cut(s)	508
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	3 cut(s)	132, 162, 305
FokI	GGATG	1 cut(s)	255
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	3 cut(s)	132, 162, 305
FspBI	CTAG	2 cut(s)	239, 435
GlaI	GCGC	2 cut(s)	409, 411
GluI	GCNGC	3 cut(s)	132, 162, 305
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	485
HgaI	GACGC	1 cut(s)	305
HhaI	GCGC	2 cut(s)	410, 412
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	1 cut(s)	512
Hin6I	GCGC	2 cut(s)	408, 410
HinP1I	GCGC	2 cut(s)	408, 410
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	5 cut(s)	47, 59, 146, 309, 470
HphI	GGTGA	2 cut(s)	343, 614
Hpy166II	GTNNAC	4 cut(s)	76, 344, 425, 549
Hpy188I	TCNGA	4 cut(s)	52, 277, 295, 492
Hpy188III	TCNNGA	2 cut(s)	435, 474
Hpy8I	GTNNAC	4 cut(s)	76, 344, 425, 549
HpyAV	CCTTC	2 cut(s)	47, 163
HpyCH4III	ACNGT	3 cut(s)	143, 226, 567
HpyCH4IV	ACGT	1 cut(s)	392
HpyCH4V	TGCA	2 cut(s)	210, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	409, 593
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	1 cut(s)	392
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	1 cut(s)	512
HspAI	GCGC	2 cut(s)	408, 410
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	6 cut(s)	18, 40, 80, 107, 459, 490
Lsp1109I	GCAGC	3 cut(s)	118, 148, 291
LweI	GCATC	1 cut(s)	233
MaeI	CTAG	2 cut(s)	239, 435
MaeII	ACGT	1 cut(s)	392
MaeIII	GTNAC	1 cut(s)	602
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	4 cut(s)	19, 56, 452, 470
MfeI	CAATTG	1 cut(s)	313
MhlI	GDGCHC	2 cut(s)	116, 427
MluCI	AATT	6 cut(s)	287, 313, 330, 347, 512, 589
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	3 cut(s)	329, 393, 517
MseI	TTAA	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	95
MunI	CAATTG	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	95
MvnI	CGCG	2 cut(s)	410, 412
MwoI	GCNNNNNNNGC	2 cut(s)	409, 593
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	1 cut(s)	512
NmeAIII	GCCGAG	2 cut(s)	325, 423
NmuCI	GTSAC	1 cut(s)	602
PauI	GCGCGC	1 cut(s)	408
PcsI	WCGNNNNNNNCGW	1 cut(s)	488
PfeI	GAWTC	4 cut(s)	47, 146, 309, 470
PfoI	TCCNGGA	1 cut(s)	93
PkrI	GCNGC	3 cut(s)	133, 163, 306
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PteI	GCGCGC	1 cut(s)	408
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
SacI	GAGCTC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	3 cut(s)	132, 162, 305
Sau3AI	GATC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	2 cut(s)	116, 427
SfaNI	GCATC	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
Sse9I	AATT	6 cut(s)	287, 313, 330, 347, 512, 589
SspMI	CTAG	2 cut(s)	239, 435
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	93
StyI	CCWWGG	2 cut(s)	63, 576
TaaI	ACNGT	3 cut(s)	143, 226, 567
TaiI	ACGT	1 cut(s)	395
TaqI	TCGA	1 cut(s)	379
TasI	AATT	6 cut(s)	287, 313, 330, 347, 512, 589
TatI	WGTACW	1 cut(s)	546
TfiI	GAWTC	4 cut(s)	47, 146, 309, 470
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	602
TseI	GCWGC	3 cut(s)	131, 161, 304
Tsp45I	GTSAC	1 cut(s)	602
TspDTI	ATGAA	4 cut(s)	113, 300, 471, 525
VneI	GTGCAC	1 cut(s)	423
XapI	RAATTY	3 cut(s)	287, 330, 512
XbaI	TCTAGA	1 cut(s)	434
XspI	CTAG	2 cut(s)	239, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.