RchiOBHm_Chr2g0090031

protein ABIL5 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013584
Physical Location & Seq
Forward (+)
4036206 .. 4038153
1948 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46531

Sequence Viewer

Length: 753 bp
ATGGAGAAGATGGAGAACTCTATACCCTGTTCAGGGAAGCAAGAAGATTCAGAAGGCGAGTCCAAGGACGTTGTGAACTTTGATAAGTCTCTCCAGGAACTAAGAGACTTGAGCTCCCAACTTCATTATGCTGCTGACTACTGTGAATCAACCTTCTTGGCTGCCCAAGAAAAGAGAGCTGTGGTGGAAAACACAAAAGAGTATATATGCAGAGCTGTGATTACTGTTGTTGATCATCTAGGATGCGTTTCTGCTAACCTTAATGGTCTCATTTCTGAGACTAATGAATTTTCAGACCCCGAGCTGCGAATCAATTGCCTCGAACAAAGAATTCTCCTATGTGAACAATTCACCCACAAGCTTGCTCTCACAAGAACTAGATGGCGTGAGACTTTACCGAGGCATAGCGCACGTTTTTTATGTGCACCTATCTCTAGAGAGGATGAGAAATCAAATGAAGATATAAGGGACTGTGGAAAGCCGGCCTTTCGGAAAACTACTGACAGGCATGAATTTGACAGAGAGGAAGCAATGCCACTTTTCTTGTACACTTACTCACACAAACCGTCTTTGTCCAAGGATAATGCTAATTCAGCTTTAGTGCCTGTTCGTGATGGTCTATCAATCCTTTCCAAAAGTCCAAATCCCGCATTTCATTTCCAGCAAACTCGGAATAATGGACGCAGTACCAGGAGATCCGGGCAGGGTAGTGACTTTTTTTCACGCATGAGACGAGCTAAACGAGCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

28.66

Weight (kDa)

7.6

Isoelectric Point (pI)

53.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 648
AclWI GGATC 1 cut(s) 690
AcsI RAATTY 3 cut(s) 287, 330, 512
AfaI GTAC 2 cut(s) 548, 688
AfiI CCNNNNNNNGG 2 cut(s) 32, 33
AjnI CCWGG 2 cut(s) 93, 689
AluBI AGCT 7 cut(s) 114, 179, 215, 304, 361, 596, 737
AluI AGCT 7 cut(s) 114, 179, 215, 304, 361, 596, 737
Alw21I GWGCWC 2 cut(s) 116, 427
Alw26I GTCTC 6 cut(s) 93, 99, 272, 272, 383, 724
Alw44I GTGCAC 1 cut(s) 423
AlwI GGATC 1 cut(s) 690
Ama87I CYCGRG 1 cut(s) 299
AoxI GGCC 1 cut(s) 483
ApaLI GTGCAC 1 cut(s) 423
ApeKI GCWGC 3 cut(s) 131, 161, 304
ApoI RAATTY 3 cut(s) 287, 330, 512
AspLEI GCGC 1 cut(s) 410
AsuC2I CCSGG 1 cut(s) 700
AsuHPI GGTGA 1 cut(s) 343
AvaI CYCGRG 1 cut(s) 299
BaeGI GKGCMC 1 cut(s) 427
BanII GRGCYC 1 cut(s) 116
Bbv12I GWGCWC 2 cut(s) 116, 427
BbvI GCAGC 3 cut(s) 118, 148, 291
BccI CCATC 3 cut(s) 4, 375, 608
BcgI CGANNNNNNTGC 2 cut(s) 297, 331
BciT130I CCWGG 2 cut(s) 95, 691
BclI TGATCA 1 cut(s) 232
BcnI CCSGG 1 cut(s) 700
BcoDI GTCTC 6 cut(s) 93, 99, 272, 272, 383, 724
BfaI CTAG 3 cut(s) 239, 378, 435
BisI GCNGC 3 cut(s) 132, 162, 305
BlsI GCNGC 3 cut(s) 133, 163, 306
Bme1390I CCNGG 3 cut(s) 95, 691, 700
BmeT110I CYCGRG 1 cut(s) 299
BmrFI CCNGG 3 cut(s) 95, 691, 700
BmsI GCATC 1 cut(s) 233
BpmI CTGGAG 1 cut(s) 77
BpuEI CTTGAG 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 700
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 3 cut(s) 63, 398, 576
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 33
Bse118I RCCGGY 1 cut(s) 481
Bse3DI GCAATG 2 cut(s) 537, 753
BseBI CCWGG 2 cut(s) 95, 691
BseDI CCNNGG 3 cut(s) 63, 398, 576
BseGI GGATG 2 cut(s) 248, 448
BseLI CCNNNNNNNGG 2 cut(s) 32, 33
BseMI GCAATG 2 cut(s) 537, 753
BseMII CTCAG 1 cut(s) 267
BseSI GKGCMC 1 cut(s) 427
BseXI GCAGC 3 cut(s) 118, 148, 291
BshFI GGCC 1 cut(s) 485
BsiHKAI GWGCWC 2 cut(s) 116, 427
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 2 cut(s) 482, 699
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 2 cut(s) 32, 33
BsmAI GTCTC 6 cut(s) 93, 99, 272, 272, 383, 724
BsmBI CGTCTC 1 cut(s) 724
BsmFI GGGAC 1 cut(s) 482
BsnI GGCC 1 cut(s) 485
Bso31I GGTCTC 1 cut(s) 272
BsoBI CYCGRG 1 cut(s) 299
Bsp1286I GDGCHC 2 cut(s) 116, 427
Bsp1407I TGTACA 1 cut(s) 546
Bsp143I GATC 2 cut(s) 232, 695
BspACI CCGC 1 cut(s) 648
BspANI GGCC 1 cut(s) 485
BspCNI CTCAG 1 cut(s) 268
BspPI GGATC 1 cut(s) 690
BspTNI GGTCTC 1 cut(s) 272
BsrDI GCAATG 2 cut(s) 537, 753
BsrFI RCCGGY 1 cut(s) 481
BsrGI TGTACA 1 cut(s) 546
BssAI RCCGGY 1 cut(s) 481
BssECI CCNNGG 3 cut(s) 63, 398, 576
BssMI GATC 2 cut(s) 232, 695
BssT1I CCWWGG 2 cut(s) 63, 576
Bst2UI CCWGG 2 cut(s) 95, 691
Bst4CI ACNGT 4 cut(s) 143, 226, 473, 567
BstAUI TGTACA 1 cut(s) 546
BstC8I GCNNGC 2 cut(s) 363, 483
BstDEI CTNAG 2 cut(s) 101, 276
BstF5I GGATG 2 cut(s) 248, 448
BstHHI GCGC 1 cut(s) 410
BstKTI GATC 2 cut(s) 235, 698
BstMAI GTCTC 6 cut(s) 93, 99, 272, 272, 383, 724
BstMBI GATC 2 cut(s) 232, 695
BstMWI GCNNNNNNNGC 2 cut(s) 593, 743
BstNI CCWGG 2 cut(s) 95, 691
BstSCI CCNGG 3 cut(s) 93, 689, 698
BstSLI GKGCMC 1 cut(s) 427
BstV1I GCAGC 3 cut(s) 118, 148, 291
BstX2I RGATCY 1 cut(s) 695
BstYI RGATCY 1 cut(s) 695
BsuRI GGCC 1 cut(s) 485
BtsCI GGATG 2 cut(s) 248, 448
Cac8I GCNNGC 2 cut(s) 363, 483
CfoI GCGC 1 cut(s) 410
Cfr10I RCCGGY 1 cut(s) 481
CseI GACGC 1 cut(s) 690
Csp6I GTAC 2 cut(s) 547, 687
CspCI CAANNNNNGTGG 2 cut(s) 525, 560
CviAII CATG 2 cut(s) 509, 727
CviQI GTAC 2 cut(s) 547, 687
DdeI CTNAG 2 cut(s) 101, 276
DpnI GATC 2 cut(s) 234, 697
DpnII GATC 2 cut(s) 232, 695
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 2 cut(s) 63, 576
Eco24I GRGCYC 1 cut(s) 116
Eco31I GGTCTC 1 cut(s) 272
Eco53kI GAGCTC 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 299
EcoICRI GAGCTC 1 cut(s) 114
EcoRI GAATTC 1 cut(s) 330
EcoRII CCWGG 2 cut(s) 93, 689
EcoT14I CCWWGG 2 cut(s) 63, 576
EcoT38I GRGCYC 1 cut(s) 116
ErhI CCWWGG 2 cut(s) 63, 576
Esp3I CGTCTC 1 cut(s) 724
FaeI CATG 2 cut(s) 512, 730
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FaqI GGGAC 1 cut(s) 482
FatI CATG 2 cut(s) 508, 726
FauI CCCGC 1 cut(s) 655
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 3 cut(s) 132, 162, 305
FokI GGATG 2 cut(s) 255, 455
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 3 cut(s) 132, 162, 305
FspBI CTAG 3 cut(s) 239, 378, 435
GlaI GCGC 1 cut(s) 409
GluI GCNGC 3 cut(s) 132, 162, 305
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 1 cut(s) 485
HapII CCGG 2 cut(s) 482, 699
HgaI GACGC 1 cut(s) 690
HhaI GCGC 1 cut(s) 410
Hin1II CATG 2 cut(s) 512, 730
Hin6I GCGC 1 cut(s) 408
HinP1I GCGC 1 cut(s) 408
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 4 cut(s) 47, 59, 146, 309
HpaII CCGG 2 cut(s) 482, 699
HphI GGTGA 1 cut(s) 343
Hpy166II GTNNAC 4 cut(s) 76, 344, 425, 549
Hpy188I TCNGA 5 cut(s) 52, 277, 295, 492, 672
Hpy188III TCNNGA 2 cut(s) 435, 611
Hpy8I GTNNAC 4 cut(s) 76, 344, 425, 549
HpyAV CCTTC 2 cut(s) 47, 163
HpyCH4III ACNGT 4 cut(s) 143, 226, 473, 567
HpyCH4IV ACGT 2 cut(s) 69, 412
HpyCH4V TGCA 2 cut(s) 210, 425
HpyF10VI GCNNNNNNNGC 2 cut(s) 593, 743
HpyF3I CTNAG 2 cut(s) 101, 276
HpySE526I ACGT 2 cut(s) 69, 412
Hsp92II CATG 2 cut(s) 512, 730
HspAI GCGC 1 cut(s) 408
KroI GCCGGC 1 cut(s) 481
KroNI GCCGGC 1 cut(s) 483
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 2 cut(s) 232, 695
LmnI GCTCC 1 cut(s) 119
Lsp1109I GCAGC 3 cut(s) 118, 148, 291
LweI GCATC 1 cut(s) 233
MaeI CTAG 3 cut(s) 239, 378, 435
MaeII ACGT 2 cut(s) 69, 412
MaeIII GTNAC 1 cut(s) 710
MalI GATC 2 cut(s) 234, 697
MboI GATC 2 cut(s) 232, 695
MboII GAAGA 3 cut(s) 19, 56, 470
MfeI CAATTG 1 cut(s) 313
MflI RGATCY 1 cut(s) 695
MhlI GDGCHC 2 cut(s) 116, 427
MluCI AATT 6 cut(s) 287, 313, 330, 347, 512, 589
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 4 cut(s) 329, 393, 433, 517
MroNI GCCGGC 1 cut(s) 481
MseI TTAA 1 cut(s) 261
MspI CCGG 2 cut(s) 482, 699
MspR9I CCNGG 3 cut(s) 95, 691, 700
MunI CAATTG 1 cut(s) 313
MvaI CCWGG 2 cut(s) 95, 691
MwoI GCNNNNNNNGC 2 cut(s) 593, 743
NaeI GCCGGC 1 cut(s) 483
NciI CCSGG 1 cut(s) 700
NdeII GATC 2 cut(s) 232, 695
NgoMIV GCCGGC 1 cut(s) 481
NlaIII CATG 2 cut(s) 512, 730
NmuCI GTSAC 1 cut(s) 710
PcsI WCGNNNNNNNCGW 2 cut(s) 730, 739
PdiI GCCGGC 1 cut(s) 483
PfeI GAWTC 3 cut(s) 47, 146, 309
PfoI TCCNGGA 1 cut(s) 93
PkrI GCNGC 3 cut(s) 133, 163, 306
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 116
Psp6I CCWGG 2 cut(s) 93, 689
PspGI CCWGG 2 cut(s) 93, 689
PsuI RGATCY 1 cut(s) 695
RsaI GTAC 2 cut(s) 548, 688
RsaNI GTAC 2 cut(s) 547, 687
SacI GAGCTC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 3 cut(s) 132, 162, 305
Sau3AI GATC 2 cut(s) 232, 695
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 3 cut(s) 95, 691, 700
SduI GDGCHC 2 cut(s) 116, 427
SfaNI GCATC 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
Sse9I AATT 6 cut(s) 287, 313, 330, 347, 512, 589
SsiI CCGC 1 cut(s) 648
SspMI CTAG 3 cut(s) 239, 378, 435
SstI GAGCTC 1 cut(s) 116
StyD4I CCNGG 3 cut(s) 93, 689, 698
StyI CCWWGG 2 cut(s) 63, 576
TaaI ACNGT 4 cut(s) 143, 226, 473, 567
TaiI ACGT 2 cut(s) 72, 415
TaqI TCGA 1 cut(s) 321
TasI AATT 6 cut(s) 287, 313, 330, 347, 512, 589
TatI WGTACW 1 cut(s) 546
TfiI GAWTC 3 cut(s) 47, 146, 309
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TseFI GTSAC 1 cut(s) 710
TseI GCWGC 3 cut(s) 131, 161, 304
Tsp45I GTSAC 1 cut(s) 710
TspDTI ATGAA 5 cut(s) 113, 300, 471, 525, 644
VneI GTGCAC 1 cut(s) 423
XapI RAATTY 3 cut(s) 287, 330, 512
XbaI TCTAGA 1 cut(s) 434
XspI CTAG 3 cut(s) 239, 378, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.