FvH4_1g05030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016631
Physical Location & Seq
Reverse (-)
2672092 .. 2672403
312 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05030.t1

Sequence Viewer

Length: 312 bp
ATGTGTCACCCAGCGGGAGTGTCTTTGGTTGCACACAGAGACTTGGCGGTGCAAAATCGCCGGTGGCTGCTGCTTCTTCTGCAGGCACGGTTCGACGGTTCAAGGAACTTGCATGCAGCTGCAGACAGAGGAGTTAGAGAGGCTGCTGCTTCTGGTGGAGGTGGCGGCGGTGGCGGCGGAGCAAGGCGATGTGTGTGCTCGCCGACAAGGCATCCGGGGTCGTTCCGGTGCAGGCAACACCATGCTGATCAGTATGTATGGGGTGGTCGAACTGTGACAAGAATCAGGTCCAGTAGTACTAGTACTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

10.98

Weight (kDa)

11.57

Isoelectric Point (pI)

58.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52342
fragaria_vesca FvH4_1g05030
prunus_persica Prupe.7G229700_v2.0.a1
pyrus_communis pycom02g04070 pycom15g16740
rosa_chinensis RchiOBHm_Chr2g0090641
rosa_laevigata RLG00000016127
rosa_roxburghii Rroxscaffold_2G00150930
rosa_rugosa Rorug02G0009700
rosa_samantha Rh2AG055600 Rh2BG054000 Rh2CG056300 Rh2DG055000
rosa_wichuraiana Rw2G004720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 14, 47, 165, 168, 174, 177
AfaI GTAC 2 cut(s) 298, 304
AgsI TTSAA 1 cut(s) 102
AhlI ACTAGT 1 cut(s) 299
AluBI AGCT 2 cut(s) 119, 309
AluI AGCT 2 cut(s) 119, 309
Alw21I GWGCWC 1 cut(s) 200
Alw26I GTCTC 1 cut(s) 33
ApeKI GCWGC 6 cut(s) 67, 70, 116, 119, 143, 146
AspS9I GGNCC 1 cut(s) 288
AsuC2I CCSGG 1 cut(s) 216
AvaII GGWCC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 6 cut(s) 54, 57, 106, 128, 130, 133
BcgI CGANNNNNNTGC 2 cut(s) 177, 211
BclI TGATCA 1 cut(s) 247
BcnI CCSGG 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 33
BcuI ACTAGT 1 cut(s) 299
BfaI CTAG 2 cut(s) 300, 306
BfmI CTRYAG 2 cut(s) 80, 120
BglI GCCNNNNNGGC 1 cut(s) 208
BisI GCNGC 8 cut(s) 68, 71, 117, 120, 144, 147, 166, 175
BlsI GCNGC 8 cut(s) 69, 72, 118, 121, 145, 148, 167, 176
BmcAI AGTACT 2 cut(s) 298, 304
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 1 cut(s) 220
BpuMI CCSGG 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 215
BsaWI WCCGGW 1 cut(s) 225
Bse118I RCCGGY 1 cut(s) 60
Bse1I ACTGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 1 cut(s) 211
BseNI ACTGG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 144
BseXI GCAGC 6 cut(s) 54, 57, 106, 128, 130, 133
BseYI CCCAGC 1 cut(s) 10
BsgI GTGCAG 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 200
BsiSI CCGG 3 cut(s) 61, 215, 226
BsmAI GTCTC 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 1 cut(s) 247
BspACI CCGC 6 cut(s) 14, 47, 165, 168, 174, 177
BspMAI CTGCAG 2 cut(s) 84, 124
BsrFI RCCGGY 1 cut(s) 60
BsrI ACTGG 1 cut(s) 291
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 1 cut(s) 247
Bst4CI ACNGT 3 cut(s) 90, 98, 274
BstC8I GCNNGC 4 cut(s) 84, 114, 200, 233
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 1 cut(s) 250
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 4 cut(s) 79, 171, 174, 208
BstNSI RCATGY 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 214
BstSFI CTRYAG 2 cut(s) 80, 120
BstV1I GCAGC 6 cut(s) 54, 57, 106, 128, 130, 133
BtgZI GCGATG 1 cut(s) 202
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 4 cut(s) 84, 114, 200, 233
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 288
Csp6I GTAC 2 cut(s) 297, 303
CviAII CATG 2 cut(s) 113, 242
CviJI RGCY 4 cut(s) 67, 119, 143, 309
CviKI_1 RGCY 4 cut(s) 67, 119, 143, 309
CviQI GTAC 2 cut(s) 297, 303
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
EciI GGCGGA 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 288
FaeI CATG 2 cut(s) 116, 245
FaiI YATR 4 cut(s) 114, 243, 255, 259
FatI CATG 2 cut(s) 112, 241
FauI CCCGC 1 cut(s) 7
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 8 cut(s) 68, 71, 117, 120, 144, 147, 166, 175
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 8 cut(s) 68, 71, 117, 120, 144, 147, 166, 175
FspBI CTAG 2 cut(s) 300, 306
GluI GCNGC 8 cut(s) 68, 71, 117, 120, 144, 147, 166, 175
GsaI CCCAGC 1 cut(s) 14
HapII CCGG 3 cut(s) 61, 215, 226
Hin1II CATG 2 cut(s) 116, 245
HinfI GANTC 1 cut(s) 282
HpaII CCGG 3 cut(s) 61, 215, 226
Hpy99I CGWCG 1 cut(s) 98
HpyCH4III ACNGT 3 cut(s) 90, 98, 274
HpyCH4V TGCA 7 cut(s) 32, 52, 82, 112, 116, 122, 231
HpyF10VI GCNNNNNNNGC 4 cut(s) 79, 171, 174, 208
Hsp92II CATG 2 cut(s) 116, 245
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 9 cut(s) 24, 68, 74, 138, 217, 228, 239, 271, 304
Lsp1109I GCAGC 6 cut(s) 54, 57, 106, 128, 130, 133
LweI GCATC 1 cut(s) 220
MaeI CTAG 2 cut(s) 300, 306
MaeIII GTNAC 2 cut(s) 5, 274
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 200
MnlI CCTC 3 cut(s) 122, 133, 152
MspA1I CMGCKG 2 cut(s) 14, 119
MspI CCGG 3 cut(s) 61, 215, 226
MspR9I CCNGG 1 cut(s) 216
MwoI GCNNNNNNNGC 4 cut(s) 79, 171, 174, 208
NciI CCSGG 1 cut(s) 216
NdeII GATC 1 cut(s) 247
NlaIII CATG 2 cut(s) 116, 245
NmuCI GTSAC 2 cut(s) 5, 274
NspI RCATGY 1 cut(s) 116
PaeI GCATGC 1 cut(s) 116
PfeI GAWTC 1 cut(s) 282
PkrI GCNGC 8 cut(s) 69, 72, 118, 121, 145, 148, 167, 176
PspFI CCCAGC 1 cut(s) 10
PspPI GGNCC 1 cut(s) 288
PstI CTGCAG 2 cut(s) 84, 124
PvuII CAGCTG 1 cut(s) 119
RsaI GTAC 2 cut(s) 298, 304
RsaNI GTAC 2 cut(s) 297, 303
SatI GCNGC 8 cut(s) 68, 71, 117, 120, 144, 147, 166, 175
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 1 cut(s) 288
ScaI AGTACT 2 cut(s) 298, 304
ScrFI CCNGG 1 cut(s) 216
SduI GDGCHC 1 cut(s) 200
SetI ASST 4 cut(s) 121, 163, 290, 311
SfaNI GCATC 1 cut(s) 220
SfcI CTRYAG 2 cut(s) 80, 120
SgrAI CRCCGGYG 1 cut(s) 60
SinI GGWCC 1 cut(s) 288
SpeI ACTAGT 1 cut(s) 299
SphI GCATGC 1 cut(s) 116
SsiI CCGC 6 cut(s) 14, 47, 165, 168, 174, 177
SspMI CTAG 2 cut(s) 300, 306
StyD4I CCNGG 1 cut(s) 214
TaaI ACNGT 3 cut(s) 90, 98, 274
TaqI TCGA 2 cut(s) 93, 268
TatI WGTACW 2 cut(s) 296, 302
TauI GCSGC 2 cut(s) 168, 177
TfiI GAWTC 1 cut(s) 282
TseFI GTSAC 2 cut(s) 5, 274
TseI GCWGC 6 cut(s) 67, 70, 116, 119, 143, 146
Tsp45I GTSAC 2 cut(s) 5, 274
VpaK11BI GGWCC 1 cut(s) 288
XceI RCATGY 1 cut(s) 116
XspI CTAG 2 cut(s) 300, 306
ZrmI AGTACT 2 cut(s) 298, 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.