Rh2DG055000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0016631
Physical Location & Seq
Reverse (-)
3983726 .. 3987416
3691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG055000.1

Sequence Viewer

Length: 528 bp
ATGTGTCACCCGGCGGGTGTGTCTTCAGTTGGCCATAGAGACTCGGCGGTGCAAAATCGCCGGTGGCTGCTTCTTCTTCTGCAGGCGCGTGTAGATGGTGCAAGGAACTTGCAGGAACCTGCAGCTAGAGGAGTTAGAGAGGCTGCTGCTTCTGGTGGAGGTGGCAGCGGTGGTGGCGGAGGAAGGCGGTGCGTGTGCTCGCCGACCAGGCATCCGGGGTCGTTCCGGTGCAGGCAACACCATGCTGATCAGTATGTCTGGGGTGGTCGAACTGTGACAAGAAACAGGGATGTTTTGATTGCTCTAACCCAGAGGTGGATCAACAATCAAGGATGTTGCTCGTTGACTACTAGGAATGTTGAATTAAGAGACGACATGGCCTTCTTGACTGTGGAAAGTCCCAAGGATTCAAAGACTACCGCAAAAATCTTCTTGGAGTTTCTTATGGCTGTTCATGGAATTATAGGTTGTTTTAGGGCTCGAGACGATCTCTATTTTAAACTGAAGAAACAGAATATCTCACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.3

Weight (kDa)

10.07

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52342
fragaria_vesca FvH4_1g05030
prunus_persica Prupe.7G229700_v2.0.a1
pyrus_communis pycom02g04070 pycom15g16740
rosa_chinensis RchiOBHm_Chr2g0090641
rosa_laevigata RLG00000016127
rosa_roxburghii Rroxscaffold_2G00150930
rosa_rugosa Rorug02G0009700
rosa_samantha Rh2AG055600 Rh2BG054000 Rh2CG056300 Rh2DG055000
rosa_wichuraiana Rw2G004720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 127
AccII CGCG 1 cut(s) 88
AciI CCGC 6 cut(s) 14, 47, 168, 177, 187, 420
AclWI GGATC 1 cut(s) 326
AcoI YGGCCR 1 cut(s) 31
AcuI CTGAAG 2 cut(s) 9, 524
AfiI CCNNNNNNNGG 1 cut(s) 315
AgsI TTSAA 2 cut(s) 362, 411
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw21I GWGCWC 1 cut(s) 200
Alw26I GTCTC 3 cut(s) 33, 363, 477
AlwI GGATC 1 cut(s) 326
Ama87I CYCGRG 1 cut(s) 480
AoxI GGCC 2 cut(s) 31, 378
ApeKI GCWGC 5 cut(s) 67, 122, 143, 146, 165
AspLEI GCGC 1 cut(s) 88
AsuC2I CCSGG 2 cut(s) 11, 216
AvaI CYCGRG 1 cut(s) 480
BalI TGGCCA 1 cut(s) 33
BanII GRGCYC 1 cut(s) 481
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 5 cut(s) 54, 130, 133, 134, 177
BccI CCATC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 208
BclI TGATCA 1 cut(s) 247
BcnI CCSGG 2 cut(s) 11, 216
BcoDI GTCTC 3 cut(s) 33, 363, 477
BfaI CTAG 2 cut(s) 126, 351
BfmI CTRYAG 2 cut(s) 80, 120
BfuAI ACCTGC 1 cut(s) 127
BglI GCCNNNNNGGC 1 cut(s) 208
BisI GCNGC 5 cut(s) 68, 123, 144, 147, 166
BlsI GCNGC 5 cut(s) 69, 124, 145, 148, 167
Bme1390I CCNGG 3 cut(s) 11, 208, 216
BmeT110I CYCGRG 1 cut(s) 480
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 3 cut(s) 11, 208, 216
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 15
BplI GAGNNNNNCTC 2 cut(s) 474, 506
BpuMI CCSGG 2 cut(s) 11, 216
BsaJI CCNNGG 2 cut(s) 215, 402
BsaWI WCCGGW 1 cut(s) 225
Bsc4I CCNNNNNNNGG 1 cut(s) 315
Bse118I RCCGGY 1 cut(s) 60
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 2 cut(s) 215, 402
BseGI GGATG 3 cut(s) 211, 295, 338
BseLI CCNNNNNNNGG 1 cut(s) 315
BseRI GAGGAG 1 cut(s) 144
BseXI GCAGC 5 cut(s) 54, 130, 133, 134, 177
BsgI GTGCAG 1 cut(s) 250
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 2 cut(s) 33, 380
BsiHKAI GWGCWC 1 cut(s) 200
BsiHKCI CYCGRG 1 cut(s) 480
BsiSI CCGG 4 cut(s) 11, 61, 215, 226
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 1 cut(s) 315
BsmAI GTCTC 3 cut(s) 33, 363, 477
BsmBI CGTCTC 2 cut(s) 363, 477
BsmFI GGGAC 1 cut(s) 384
BsnI GGCC 2 cut(s) 33, 380
BsoBI CYCGRG 1 cut(s) 480
Bsp1286I GDGCHC 2 cut(s) 200, 481
Bsp143I GATC 3 cut(s) 247, 318, 487
BspACI CCGC 6 cut(s) 14, 47, 168, 177, 187, 420
BspANI GGCC 2 cut(s) 33, 380
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 117
BspMAI CTGCAG 2 cut(s) 84, 124
BspMI ACCTGC 1 cut(s) 127
BspPI GGATC 1 cut(s) 326
BsrFI RCCGGY 1 cut(s) 60
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 2 cut(s) 215, 402
BssMI GATC 3 cut(s) 247, 318, 487
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 2 cut(s) 274, 391
BstC8I GCNNGC 3 cut(s) 84, 200, 233
BstF5I GGATG 3 cut(s) 211, 295, 338
BstFNI CGCG 1 cut(s) 88
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 3 cut(s) 250, 321, 490
BstMAI GTCTC 3 cut(s) 33, 363, 477
BstMBI GATC 3 cut(s) 247, 318, 487
BstMWI GCNNNNNNNGC 2 cut(s) 174, 208
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 3 cut(s) 9, 206, 214
BstSFI CTRYAG 2 cut(s) 80, 120
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 5 cut(s) 54, 130, 133, 134, 177
BstV2I GAAGAC 1 cut(s) 15
BsuRI GGCC 2 cut(s) 33, 380
BtsCI GGATG 3 cut(s) 211, 295, 338
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 3 cut(s) 84, 200, 233
CfoI GCGC 1 cut(s) 88
Cfr10I RCCGGY 1 cut(s) 60
CviAII CATG 3 cut(s) 242, 376, 455
CviJI RGCY 7 cut(s) 33, 67, 125, 143, 380, 449, 479
CviKI_1 RGCY 7 cut(s) 33, 67, 125, 143, 380, 449, 479
DpnI GATC 3 cut(s) 249, 320, 489
DpnII GATC 3 cut(s) 247, 318, 487
DraI TTTAAA 1 cut(s) 499
EaeI YGGCCR 1 cut(s) 31
EciI GGCGGA 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 481
Eco57I CTGAAG 2 cut(s) 9, 524
Eco88I CYCGRG 1 cut(s) 480
EcoRII CCWGG 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 481
ErhI CCWWGG 1 cut(s) 402
Esp3I CGTCTC 2 cut(s) 363, 477
FaeI CATG 3 cut(s) 245, 379, 458
FaiI YATR 8 cut(s) 36, 243, 255, 377, 446, 456, 464, 526
FaqI GGGAC 1 cut(s) 384
FatI CATG 3 cut(s) 241, 375, 454
FauI CCCGC 1 cut(s) 7
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 5 cut(s) 68, 123, 144, 147, 166
FokI GGATG 3 cut(s) 198, 302, 345
FriOI GRGCYC 1 cut(s) 481
Fsp4HI GCNGC 5 cut(s) 68, 123, 144, 147, 166
FspBI CTAG 2 cut(s) 126, 351
GlaI GCGC 1 cut(s) 87
GluI GCNGC 5 cut(s) 68, 123, 144, 147, 166
HaeIII GGCC 2 cut(s) 33, 380
HapII CCGG 4 cut(s) 11, 61, 215, 226
HhaI GCGC 1 cut(s) 88
Hin1II CATG 3 cut(s) 245, 379, 458
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 2 cut(s) 41, 407
HpaII CCGG 4 cut(s) 11, 61, 215, 226
Hpy166II GTNNAC 1 cut(s) 345
Hpy188III TCNNGA 2 cut(s) 385, 482
Hpy8I GTNNAC 1 cut(s) 345
HpyAV CCTTC 2 cut(s) 177, 391
HpyCH4III ACNGT 2 cut(s) 274, 391
HpyCH4V TGCA 6 cut(s) 52, 82, 101, 112, 122, 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 208
Hsp92II CATG 3 cut(s) 245, 379, 458
HspAI GCGC 1 cut(s) 86
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 3 cut(s) 247, 318, 487
Lsp1109I GCAGC 5 cut(s) 54, 130, 133, 134, 177
LweI GCATC 1 cut(s) 220
MaeI CTAG 2 cut(s) 126, 351
MaeIII GTNAC 2 cut(s) 5, 274
MalI GATC 3 cut(s) 249, 320, 489
MboI GATC 3 cut(s) 247, 318, 487
MboII GAAGA 5 cut(s) 15, 65, 68, 421, 517
MhlI GDGCHC 2 cut(s) 200, 481
MlsI TGGCCA 1 cut(s) 33
MluCI AATT 2 cut(s) 362, 459
MluNI TGGCCA 1 cut(s) 33
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 5 cut(s) 122, 133, 152, 173, 306
Mox20I TGGCCA 1 cut(s) 33
MscI TGGCCA 1 cut(s) 33
MseI TTAA 2 cut(s) 365, 498
Msp20I TGGCCA 1 cut(s) 33
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 4 cut(s) 11, 61, 215, 226
MspR9I CCNGG 3 cut(s) 11, 208, 216
MvaI CCWGG 1 cut(s) 208
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 2 cut(s) 174, 208
NciI CCSGG 2 cut(s) 11, 216
NdeII GATC 3 cut(s) 247, 318, 487
NlaIII CATG 3 cut(s) 245, 379, 458
NlaIV GGNNCC 1 cut(s) 117
NmeAIII GCCGAG 1 cut(s) 23
NmuCI GTSAC 2 cut(s) 5, 274
PaeR7I CTCGAG 1 cut(s) 480
PfeI GAWTC 1 cut(s) 407
PkrI GCNGC 5 cut(s) 69, 124, 145, 148, 167
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 117
PstI CTGCAG 2 cut(s) 84, 124
SaqAI TTAA 2 cut(s) 365, 498
SatI GCNGC 5 cut(s) 68, 123, 144, 147, 166
Sau3AI GATC 3 cut(s) 247, 318, 487
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 3 cut(s) 11, 208, 216
SduI GDGCHC 2 cut(s) 200, 481
SetI ASST 5 cut(s) 121, 127, 163, 317, 469
SfaNI GCATC 1 cut(s) 220
SfcI CTRYAG 2 cut(s) 80, 120
Sfr274I CTCGAG 1 cut(s) 480
SgrAI CRCCGGYG 1 cut(s) 60
SlaI CTCGAG 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 480
SmoI CTYRAG 1 cut(s) 480
Sse9I AATT 2 cut(s) 362, 459
SsiI CCGC 6 cut(s) 14, 47, 168, 177, 187, 420
SspMI CTAG 2 cut(s) 126, 351
StyD4I CCNGG 3 cut(s) 9, 206, 214
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 2 cut(s) 274, 391
TaqI TCGA 2 cut(s) 268, 481
TasI AATT 2 cut(s) 362, 459
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 2 cut(s) 365, 498
Tru9I TTAA 2 cut(s) 365, 498
TseFI GTSAC 2 cut(s) 5, 274
TseI GCWGC 5 cut(s) 67, 122, 143, 146, 165
Tsp45I GTSAC 2 cut(s) 5, 274
TspDTI ATGAA 1 cut(s) 443
XhoI CTCGAG 1 cut(s) 480
XspI CTAG 2 cut(s) 126, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.