RLG00000016127

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016631
Physical Location & Seq
Reverse (-)
4072661 .. 4076704
4044 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016127

Sequence Viewer

Length: 435 bp
ATGTGTCACCCGGCGGGTGTGTCTTCGGTTGGCCATAGAGACTTGGCGGGGCAAAATCGCCGGTGGCTGCTTCTTCTTCTGCAGGCTCGGGTAGATGGTGCAAGGAACTTGCAGGAACCTGCAGCTAGAGGAGTTAGAGAGGCTGCTGCTTCAGGTGGAGGTGGCAGCGGTGGTGGCGGAGCAAGGCGGTGCGTGTGCTCGCCGACCAGGCATCCGGGGTCGTTCCGGTGCAGGCAACACCAAGCTGATCAGTATGTCTGGGGTGGTCGAACTGTGACAAGAAACAGGGACGTTTTGAATGCTCTAACCCAGAGGTGGATTAACAATCAAGGATGTTGCTTGTTGACTACTAGGAATGTTGAATTAACAGACGACACGGCCTTCTTGCCTGTGGAAGGTCCCAAGGATTCAGAGACTACCGAAAAGTCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.55

Weight (kDa)

9.42

Isoelectric Point (pI)

55.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52342
fragaria_vesca FvH4_1g05030
prunus_persica Prupe.7G229700_v2.0.a1
pyrus_communis pycom02g04070 pycom15g16740
rosa_chinensis RchiOBHm_Chr2g0090641
rosa_laevigata RLG00000016127
rosa_roxburghii Rroxscaffold_2G00150930
rosa_rugosa Rorug02G0009700
rosa_samantha Rh2AG055600 Rh2BG054000 Rh2CG056300 Rh2DG055000
rosa_wichuraiana Rw2G004720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 127
AciI CCGC 5 cut(s) 14, 47, 168, 177, 187
AcoI YGGCCR 1 cut(s) 31
AcuI CTGAAG 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 315, 395
AgsI TTSAA 2 cut(s) 298, 362
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 2 cut(s) 125, 245
AluI AGCT 2 cut(s) 125, 245
Alw21I GWGCWC 1 cut(s) 200
Alw26I GTCTC 2 cut(s) 33, 407
Ama87I CYCGRG 1 cut(s) 87
AoxI GGCC 2 cut(s) 31, 378
ApeKI GCWGC 5 cut(s) 67, 122, 143, 146, 165
AspS9I GGNCC 1 cut(s) 398
AsuC2I CCSGG 2 cut(s) 11, 216
AvaI CYCGRG 1 cut(s) 87
AvaII GGWCC 1 cut(s) 398
BalI TGGCCA 1 cut(s) 33
BbsI GAAGAC 2 cut(s) 15, 420
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 5 cut(s) 54, 130, 133, 134, 177
BccI CCATC 1 cut(s) 89
BceAI ACGGC 1 cut(s) 393
BciT130I CCWGG 1 cut(s) 208
BclI TGATCA 1 cut(s) 247
BcnI CCSGG 2 cut(s) 11, 216
BcoDI GTCTC 2 cut(s) 33, 407
BfaI CTAG 2 cut(s) 126, 351
BfmI CTRYAG 2 cut(s) 80, 120
BfuAI ACCTGC 1 cut(s) 127
BglI GCCNNNNNGGC 1 cut(s) 208
BisI GCNGC 5 cut(s) 68, 123, 144, 147, 166
BlsI GCNGC 5 cut(s) 69, 124, 145, 148, 167
Bme1390I CCNGG 3 cut(s) 11, 208, 216
Bme18I GGWCC 1 cut(s) 398
BmeT110I CYCGRG 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 2 cut(s) 117, 400
BmrFI CCNGG 3 cut(s) 11, 208, 216
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 2 cut(s) 15, 420
BpuMI CCSGG 2 cut(s) 11, 216
BsaJI CCNNGG 2 cut(s) 215, 402
BsaWI WCCGGW 1 cut(s) 225
Bsc4I CCNNNNNNNGG 2 cut(s) 315, 395
Bse118I RCCGGY 1 cut(s) 60
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 2 cut(s) 215, 402
BseGI GGATG 2 cut(s) 211, 338
BseLI CCNNNNNNNGG 2 cut(s) 315, 395
BseRI GAGGAG 1 cut(s) 144
BseXI GCAGC 5 cut(s) 54, 130, 133, 134, 177
BsgI GTGCAG 1 cut(s) 250
BshFI GGCC 2 cut(s) 33, 380
BsiHKAI GWGCWC 1 cut(s) 200
BsiHKCI CYCGRG 1 cut(s) 87
BsiSI CCGG 4 cut(s) 11, 61, 215, 226
BslFI GGGAC 2 cut(s) 302, 384
BslI CCNNNNNNNGG 2 cut(s) 315, 395
BsmAI GTCTC 2 cut(s) 33, 407
BsmFI GGGAC 2 cut(s) 302, 384
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 2 cut(s) 33, 380
BsoBI CYCGRG 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 1 cut(s) 247
BspACI CCGC 5 cut(s) 14, 47, 168, 177, 187
BspANI GGCC 2 cut(s) 33, 380
BspLI GGNNCC 2 cut(s) 117, 400
BspMAI CTGCAG 2 cut(s) 84, 124
BspMI ACCTGC 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 60
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 2 cut(s) 215, 402
BssMI GATC 1 cut(s) 247
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 1 cut(s) 274
BstC8I GCNNGC 3 cut(s) 84, 200, 233
BstDEI CTNAG 1 cut(s) 432
BstENI CCTNNNNNAGG 1 cut(s) 393
BstF5I GGATG 2 cut(s) 211, 338
BstKTI GATC 1 cut(s) 250
BstMAI GTCTC 2 cut(s) 33, 407
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 2 cut(s) 174, 208
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 3 cut(s) 9, 206, 214
BstSFI CTRYAG 2 cut(s) 80, 120
BstV1I GCAGC 5 cut(s) 54, 130, 133, 134, 177
BstV2I GAAGAC 2 cut(s) 15, 420
BsuRI GGCC 2 cut(s) 33, 380
BtsCI GGATG 2 cut(s) 211, 338
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 3 cut(s) 84, 200, 233
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 398
CviJI RGCY 7 cut(s) 33, 67, 86, 125, 143, 245, 380
CviKI_1 RGCY 7 cut(s) 33, 67, 86, 125, 143, 245, 380
DdeI CTNAG 1 cut(s) 432
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
EaeI YGGCCR 1 cut(s) 31
EciI GGCGGA 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 402
Eco47I GGWCC 1 cut(s) 398
Eco57I CTGAAG 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 87
EcoNI CCTNNNNNAGG 1 cut(s) 393
EcoO109I RGGNCCY 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 402
ErhI CCWWGG 1 cut(s) 402
FaiI YATR 2 cut(s) 36, 255
FaqI GGGAC 2 cut(s) 302, 384
FauI CCCGC 2 cut(s) 7, 40
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 5 cut(s) 68, 123, 144, 147, 166
FokI GGATG 2 cut(s) 198, 345
Fsp4HI GCNGC 5 cut(s) 68, 123, 144, 147, 166
FspBI CTAG 2 cut(s) 126, 351
GluI GCNGC 5 cut(s) 68, 123, 144, 147, 166
HaeIII GGCC 2 cut(s) 33, 380
HapII CCGG 4 cut(s) 11, 61, 215, 226
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 1 cut(s) 407
HpaII CCGG 4 cut(s) 11, 61, 215, 226
Hpy166II GTNNAC 1 cut(s) 345
Hpy188I TCNGA 1 cut(s) 412
Hpy8I GTNNAC 1 cut(s) 345
HpyAV CCTTC 2 cut(s) 389, 391
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 5 cut(s) 82, 101, 112, 122, 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 208
HpyF3I CTNAG 1 cut(s) 432
HpySE526I ACGT 1 cut(s) 291
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 1 cut(s) 179
Lsp1109I GCAGC 5 cut(s) 54, 130, 133, 134, 177
LweI GCATC 1 cut(s) 220
MaeI CTAG 2 cut(s) 126, 351
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 2 cut(s) 5, 274
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 4 cut(s) 15, 65, 68, 420
MhlI GDGCHC 1 cut(s) 200
MlsI TGGCCA 1 cut(s) 33
MluCI AATT 1 cut(s) 362
MluNI TGGCCA 1 cut(s) 33
MnlI CCTC 4 cut(s) 122, 133, 152, 306
Mox20I TGGCCA 1 cut(s) 33
MscI TGGCCA 1 cut(s) 33
MseI TTAA 2 cut(s) 321, 365
Msp20I TGGCCA 1 cut(s) 33
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 4 cut(s) 11, 61, 215, 226
MspR9I CCNGG 3 cut(s) 11, 208, 216
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 1 cut(s) 208
MwoI GCNNNNNNNGC 2 cut(s) 174, 208
NciI CCSGG 2 cut(s) 11, 216
NdeII GATC 1 cut(s) 247
NlaIV GGNNCC 2 cut(s) 117, 400
NmuCI GTSAC 2 cut(s) 5, 274
PctI GAATGC 1 cut(s) 304
PfeI GAWTC 1 cut(s) 407
PkrI GCNGC 5 cut(s) 69, 124, 145, 148, 167
PpuMI RGGWCCY 1 cut(s) 398
Psp5II RGGWCCY 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 117, 400
PspPI GGNCC 1 cut(s) 398
PspPPI RGGWCCY 1 cut(s) 398
PstI CTGCAG 2 cut(s) 84, 124
SaqAI TTAA 2 cut(s) 321, 365
SatI GCNGC 5 cut(s) 68, 123, 144, 147, 166
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 1 cut(s) 398
ScrFI CCNGG 3 cut(s) 11, 208, 216
SduI GDGCHC 1 cut(s) 200
SetI ASST 8 cut(s) 121, 127, 157, 163, 247, 294, 317, 400
SfaNI GCATC 1 cut(s) 220
SfcI CTRYAG 2 cut(s) 80, 120
SgrAI CRCCGGYG 1 cut(s) 60
SinI GGWCC 1 cut(s) 398
Sse9I AATT 1 cut(s) 362
SsiI CCGC 5 cut(s) 14, 47, 168, 177, 187
SspMI CTAG 2 cut(s) 126, 351
StyD4I CCNGG 3 cut(s) 9, 206, 214
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 1 cut(s) 294
TaqI TCGA 1 cut(s) 268
TasI AATT 1 cut(s) 362
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 2 cut(s) 321, 365
Tru9I TTAA 2 cut(s) 321, 365
TseFI GTSAC 2 cut(s) 5, 274
TseI GCWGC 5 cut(s) 67, 122, 143, 146, 165
Tsp45I GTSAC 2 cut(s) 5, 274
VpaK11BI GGWCC 1 cut(s) 398
XagI CCTNNNNNAGG 1 cut(s) 393
XspI CTAG 2 cut(s) 126, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.