Rh2BG054000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0016631
Physical Location & Seq
Reverse (-)
3874590 .. 3878257
3668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG054000.1

Sequence Viewer

Length: 465 bp
ATGTGTCTCCCGGCGGGTGTGTCTTCAGTTGGCCATAGAGACTCGGCGGTGCAAAATCGCCGGTGGCTGCTTCCTCTTCTGCAGGCGCGGGTAGATGGTGCAAGGAACTTGCAGGAACCTGCAGCTAGAGGAGTTAGAGAGGCTGGTGCTTCTGGTGGAGGTGACAGCCGTGGTGGCGGAGGAAGGCGGTGCGTGTGCTCGCCGACCAGGCATCCGGGGTCGTTCCGGTGCAGGCAACACCATGCTGATCAGTATGTCTGGGGTGGTCGAACTGTGACAAGAAACAGGGATGTTTTGATTGCTCTAACCCAGAGGTGGATCAACAATCAAGGATGTTGCTCGTTGACTACTAGGAATGTTGAATTAAGAGACGACATGGCCTTCTTGACTGTGGAAAGTCCCAAGGATTCAAAGACTACCGAAAAATCTTCTTGGAGTTTCTTATGGCTGTTCATGGAATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.11

Weight (kDa)

9.84

Isoelectric Point (pI)

60.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52342
fragaria_vesca FvH4_1g05030
prunus_persica Prupe.7G229700_v2.0.a1
pyrus_communis pycom02g04070 pycom15g16740
rosa_chinensis RchiOBHm_Chr2g0090641
rosa_laevigata RLG00000016127
rosa_roxburghii Rroxscaffold_2G00150930
rosa_rugosa Rorug02G0009700
rosa_samantha Rh2AG055600 Rh2BG054000 Rh2CG056300 Rh2DG055000
rosa_wichuraiana Rw2G004720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 127
AccII CGCG 1 cut(s) 88
AciI CCGC 5 cut(s) 14, 47, 88, 177, 187
AclWI GGATC 1 cut(s) 326
AcoI YGGCCR 1 cut(s) 31
AcuI CTGAAG 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 315
AgsI TTSAA 2 cut(s) 362, 411
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw21I GWGCWC 1 cut(s) 200
Alw26I GTCTC 3 cut(s) 11, 33, 363
AlwI GGATC 1 cut(s) 326
AoxI GGCC 2 cut(s) 31, 378
ApeKI GCWGC 2 cut(s) 67, 122
AspLEI GCGC 1 cut(s) 88
AsuC2I CCSGG 2 cut(s) 11, 216
AsuHPI GGTGA 1 cut(s) 173
BalI TGGCCA 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 2 cut(s) 54, 134
BccI CCATC 1 cut(s) 89
BceAI ACGGC 1 cut(s) 153
BciT130I CCWGG 1 cut(s) 208
BclI TGATCA 1 cut(s) 247
BcnI CCSGG 2 cut(s) 11, 216
BcoDI GTCTC 3 cut(s) 11, 33, 363
BfaI CTAG 2 cut(s) 126, 351
BfmI CTRYAG 2 cut(s) 80, 120
BfuAI ACCTGC 1 cut(s) 127
BglI GCCNNNNNGGC 2 cut(s) 174, 208
BisI GCNGC 2 cut(s) 68, 123
BlsI GCNGC 2 cut(s) 69, 124
Bme1390I CCNGG 3 cut(s) 11, 208, 216
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 3 cut(s) 11, 208, 216
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 15
BpuMI CCSGG 2 cut(s) 11, 216
BsaJI CCNNGG 3 cut(s) 169, 215, 402
BsaWI WCCGGW 1 cut(s) 225
Bsc4I CCNNNNNNNGG 1 cut(s) 315
Bse118I RCCGGY 1 cut(s) 60
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 3 cut(s) 169, 215, 402
BseGI GGATG 3 cut(s) 211, 295, 338
BseLI CCNNNNNNNGG 1 cut(s) 315
BseRI GAGGAG 1 cut(s) 144
BseXI GCAGC 2 cut(s) 54, 134
BsgI GTGCAG 1 cut(s) 250
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 2 cut(s) 33, 380
BsiHKAI GWGCWC 1 cut(s) 200
BsiSI CCGG 4 cut(s) 11, 61, 215, 226
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 1 cut(s) 315
BsmAI GTCTC 3 cut(s) 11, 33, 363
BsmBI CGTCTC 1 cut(s) 363
BsmFI GGGAC 1 cut(s) 384
BsnI GGCC 2 cut(s) 33, 380
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 2 cut(s) 247, 318
BspACI CCGC 5 cut(s) 14, 47, 88, 177, 187
BspANI GGCC 2 cut(s) 33, 380
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 117
BspMAI CTGCAG 2 cut(s) 84, 124
BspMI ACCTGC 1 cut(s) 127
BspPI GGATC 1 cut(s) 326
BsrFI RCCGGY 1 cut(s) 60
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 3 cut(s) 169, 215, 402
BssMI GATC 2 cut(s) 247, 318
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 2 cut(s) 274, 391
Bst6I CTCTTC 1 cut(s) 81
BstC8I GCNNGC 3 cut(s) 84, 200, 233
BstDSI CCRYGG 1 cut(s) 169
BstF5I GGATG 3 cut(s) 211, 295, 338
BstFNI CGCG 1 cut(s) 88
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 2 cut(s) 250, 321
BstMAI GTCTC 3 cut(s) 11, 33, 363
BstMBI GATC 2 cut(s) 247, 318
BstMWI GCNNNNNNNGC 2 cut(s) 174, 208
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 3 cut(s) 9, 206, 214
BstSFI CTRYAG 2 cut(s) 80, 120
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 2 cut(s) 54, 134
BstV2I GAAGAC 1 cut(s) 15
BsuRI GGCC 2 cut(s) 33, 380
BtgI CCRYGG 1 cut(s) 169
BtsCI GGATG 3 cut(s) 211, 295, 338
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 3 cut(s) 84, 200, 233
CfoI GCGC 1 cut(s) 88
Cfr10I RCCGGY 1 cut(s) 60
CviAII CATG 3 cut(s) 242, 376, 454
CviJI RGCY 7 cut(s) 33, 67, 125, 143, 168, 380, 448
CviKI_1 RGCY 7 cut(s) 33, 67, 125, 143, 168, 380, 448
DpnI GATC 2 cut(s) 249, 320
DpnII GATC 2 cut(s) 247, 318
EaeI YGGCCR 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
EciI GGCGGA 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 402
Eco57I CTGAAG 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 402
ErhI CCWWGG 1 cut(s) 402
Esp3I CGTCTC 1 cut(s) 363
FaeI CATG 3 cut(s) 245, 379, 457
FaiI YATR 7 cut(s) 36, 243, 255, 377, 445, 455, 463
FaqI GGGAC 1 cut(s) 384
FatI CATG 3 cut(s) 241, 375, 453
FauI CCCGC 2 cut(s) 7, 81
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 68, 123
FokI GGATG 3 cut(s) 198, 302, 345
Fsp4HI GCNGC 2 cut(s) 68, 123
FspBI CTAG 2 cut(s) 126, 351
GlaI GCGC 1 cut(s) 87
GluI GCNGC 2 cut(s) 68, 123
HaeIII GGCC 2 cut(s) 33, 380
HapII CCGG 4 cut(s) 11, 61, 215, 226
HhaI GCGC 1 cut(s) 88
Hin1II CATG 3 cut(s) 245, 379, 457
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 2 cut(s) 41, 407
HpaII CCGG 4 cut(s) 11, 61, 215, 226
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 345
Hpy188III TCNNGA 1 cut(s) 385
Hpy8I GTNNAC 1 cut(s) 345
HpyAV CCTTC 2 cut(s) 177, 391
HpyCH4III ACNGT 2 cut(s) 274, 391
HpyCH4V TGCA 6 cut(s) 52, 82, 101, 112, 122, 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 208
Hsp92II CATG 3 cut(s) 245, 379, 457
HspAI GCGC 1 cut(s) 86
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 247, 318
Lsp1109I GCAGC 2 cut(s) 54, 134
LweI GCATC 1 cut(s) 220
MaeI CTAG 2 cut(s) 126, 351
MaeIII GTNAC 2 cut(s) 161, 274
MalI GATC 2 cut(s) 249, 320
MboI GATC 2 cut(s) 247, 318
MboII GAAGA 3 cut(s) 15, 68, 420
MhlI GDGCHC 1 cut(s) 200
MlsI TGGCCA 1 cut(s) 33
MluCI AATT 2 cut(s) 362, 458
MluNI TGGCCA 1 cut(s) 33
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 6 cut(s) 84, 122, 133, 152, 173, 306
Mox20I TGGCCA 1 cut(s) 33
MscI TGGCCA 1 cut(s) 33
MseI TTAA 1 cut(s) 365
Msp20I TGGCCA 1 cut(s) 33
MspI CCGG 4 cut(s) 11, 61, 215, 226
MspR9I CCNGG 3 cut(s) 11, 208, 216
MvaI CCWGG 1 cut(s) 208
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 2 cut(s) 174, 208
NciI CCSGG 2 cut(s) 11, 216
NdeII GATC 2 cut(s) 247, 318
NlaIII CATG 3 cut(s) 245, 379, 457
NlaIV GGNNCC 1 cut(s) 117
NmeAIII GCCGAG 1 cut(s) 23
NmuCI GTSAC 2 cut(s) 161, 274
PfeI GAWTC 1 cut(s) 407
PkrI GCNGC 2 cut(s) 69, 124
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 117
PstI CTGCAG 2 cut(s) 84, 124
SaqAI TTAA 1 cut(s) 365
SatI GCNGC 2 cut(s) 68, 123
Sau3AI GATC 2 cut(s) 247, 318
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 3 cut(s) 11, 208, 216
SduI GDGCHC 1 cut(s) 200
SetI ASST 4 cut(s) 121, 127, 163, 317
SfaNI GCATC 1 cut(s) 220
SfcI CTRYAG 2 cut(s) 80, 120
SgrAI CRCCGGYG 1 cut(s) 60
Sse9I AATT 2 cut(s) 362, 458
SsiI CCGC 5 cut(s) 14, 47, 88, 177, 187
SspMI CTAG 2 cut(s) 126, 351
StyD4I CCNGG 3 cut(s) 9, 206, 214
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 2 cut(s) 274, 391
TaqI TCGA 1 cut(s) 268
TasI AATT 2 cut(s) 362, 458
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 1 cut(s) 365
Tru9I TTAA 1 cut(s) 365
TseFI GTSAC 2 cut(s) 161, 274
TseI GCWGC 2 cut(s) 67, 122
Tsp45I GTSAC 2 cut(s) 161, 274
TspDTI ATGAA 1 cut(s) 442
XspI CTAG 2 cut(s) 126, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.