Prupe.7G229700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0016631
Physical Location & Seq
Forward (+)
20211484 .. 20212164
681 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G229700.1

Sequence Viewer

Length: 330 bp
ATGTGTCAGCCTCACCCAGGTGTGCCTAGTTTGGTTAGGCTGAGAGACTTGGCGCTGCTGCATCACCATGGCAGATGGCTTCTTCTGCAGGGTCCTGCGGTGGTTCAGATTCAGACGTCAGTGGATTTGCATGCCGCTGCTGCTGCAGGCATGAGAGTCGAAGAGGAGGCTGCTAGTGGTGGTGGTAGAAGAGGTGGCAGCGGTGGCCCGACAAGGCAGTGCCTGTGCTCGCCGACCCGGCATCCGGGCTCGTTTCGGTGCAGGCAACACCATGCTGGGTATGTCTGGGGTACTGGTCGGATTGTGAGAAAAAACAGCTCCACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.69

Weight (kDa)

11.05

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52342
fragaria_vesca FvH4_1g05030
prunus_persica Prupe.7G229700_v2.0.a1
pyrus_communis pycom02g04070 pycom15g16740
rosa_chinensis RchiOBHm_Chr2g0090641
rosa_laevigata RLG00000016127
rosa_roxburghii Rroxscaffold_2G00150930
rosa_rugosa Rorug02G0009700
rosa_samantha Rh2AG055600 Rh2BG054000 Rh2CG056300 Rh2DG055000
rosa_wichuraiana Rw2G004720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 119
AciI CCGC 3 cut(s) 98, 135, 201
AcyI GRCGYC 1 cut(s) 116
AfaI GTAC 1 cut(s) 292
AfiI CCNNNNNNNGG 2 cut(s) 17, 244
AjnI CCWGG 1 cut(s) 16
AleI CACNNNNGTG 1 cut(s) 18
AluBI AGCT 1 cut(s) 318
AluI AGCT 1 cut(s) 318
Alw21I GWGCWC 1 cut(s) 230
Alw26I GTCTC 1 cut(s) 39
AlwNI CAGNNNCTG 1 cut(s) 223
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 7 cut(s) 55, 58, 137, 140, 143, 170, 198
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 2 cut(s) 92, 206
AsuC2I CCSGG 2 cut(s) 238, 246
AsuHPI GGTGA 2 cut(s) 5, 56
AvaII GGWCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 230
BbvI GCAGC 7 cut(s) 42, 45, 124, 127, 130, 157, 210
BccI CCATC 1 cut(s) 69
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BciT130I CCWGG 1 cut(s) 18
BcnI CCSGG 2 cut(s) 238, 246
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 2 cut(s) 27, 174
BfmI CTRYAG 2 cut(s) 86, 144
BfoI RGCGCY 1 cut(s) 56
BglI GCCNNNNNGGC 1 cut(s) 238
BisI GCNGC 8 cut(s) 56, 59, 135, 138, 141, 144, 171, 199
BlsI GCNGC 8 cut(s) 57, 60, 136, 139, 142, 145, 172, 200
Bme1390I CCNGG 3 cut(s) 18, 238, 246
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 2 cut(s) 92, 206
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 3 cut(s) 18, 238, 246
BmsI GCATC 2 cut(s) 70, 250
BpuMI CCSGG 2 cut(s) 238, 246
BsaHI GRCGYC 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 16, 67
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 244
Bse1I ACTGG 1 cut(s) 298
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 16, 67
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 2 cut(s) 17, 244
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 7 cut(s) 42, 45, 124, 127, 130, 157, 210
BseYI CCCAGC 1 cut(s) 275
BsgI GTGCAG 1 cut(s) 280
BshFI GGCC 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 230
BsiSI CCGG 2 cut(s) 238, 245
BslI CCNNNNNNNGG 2 cut(s) 17, 244
BsmAI GTCTC 1 cut(s) 39
BsnI GGCC 1 cut(s) 207
Bsp1286I GDGCHC 2 cut(s) 230, 251
Bsp19I CCATGG 1 cut(s) 67
BspACI CCGC 3 cut(s) 98, 135, 201
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 93
BspMAI CTGCAG 2 cut(s) 90, 148
BsrI ACTGG 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 16, 67
BssNI GRCGYC 1 cut(s) 116
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 18
Bst6I CTCTTC 2 cut(s) 156, 184
BstACI GRCGYC 1 cut(s) 116
BstC8I GCNNGC 4 cut(s) 132, 148, 230, 263
BstDEI CTNAG 1 cut(s) 41
BstDSI CCRYGG 1 cut(s) 67
BstENI CCTNNNNNAGG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 241
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 1 cut(s) 55
BstMAI GTCTC 1 cut(s) 39
BstMWI GCNNNNNNNGC 5 cut(s) 85, 140, 143, 204, 238
BstNI CCWGG 1 cut(s) 18
BstNSI RCATGY 1 cut(s) 134
BstSCI CCNGG 3 cut(s) 16, 236, 244
BstSFI CTRYAG 2 cut(s) 86, 144
BstV1I GCAGC 7 cut(s) 42, 45, 124, 127, 130, 157, 210
BsuRI GGCC 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 2 cut(s) 126, 224
Cac8I GCNNGC 4 cut(s) 132, 148, 230, 263
CaiI CAGNNNCTG 1 cut(s) 223
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 2 cut(s) 92, 206
Csp6I GTAC 1 cut(s) 291
CviAII CATG 4 cut(s) 68, 131, 151, 272
CviJI RGCY 7 cut(s) 10, 40, 79, 170, 207, 249, 318
CviKI_1 RGCY 7 cut(s) 10, 40, 79, 170, 207, 249, 318
CviQI GTAC 1 cut(s) 291
DdeI CTNAG 1 cut(s) 41
Eam1104I CTCTTC 2 cut(s) 156, 184
EarI CTCTTC 2 cut(s) 156, 184
Eco130I CCWWGG 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 92
EcoNI CCTNNNNNAGG 1 cut(s) 15
EcoO109I RGGNCCY 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 4 cut(s) 71, 134, 154, 275
FaiI YATR 5 cut(s) 69, 132, 152, 273, 282
FatI CATG 4 cut(s) 67, 130, 150, 271
Fnu4HI GCNGC 8 cut(s) 56, 59, 135, 138, 141, 144, 171, 199
FokI GGATG 1 cut(s) 228
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 8 cut(s) 56, 59, 135, 138, 141, 144, 171, 199
FspBI CTAG 2 cut(s) 27, 174
GlaI GCGC 1 cut(s) 54
GluI GCNGC 8 cut(s) 56, 59, 135, 138, 141, 144, 171, 199
GsaI CCCAGC 1 cut(s) 279
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 1 cut(s) 207
HapII CCGG 2 cut(s) 238, 245
HhaI GCGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 116
Hin1II CATG 4 cut(s) 71, 134, 154, 275
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HinfI GANTC 2 cut(s) 109, 156
HpaII CCGG 2 cut(s) 238, 245
HphI GGTGA 2 cut(s) 5, 56
Hpy188I TCNGA 3 cut(s) 108, 114, 300
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 5 cut(s) 61, 88, 130, 146, 261
HpyF10VI GCNNNNNNNGC 5 cut(s) 85, 140, 143, 204, 238
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 1 cut(s) 116
Hsp92I GRCGYC 1 cut(s) 116
Hsp92II CATG 4 cut(s) 71, 134, 154, 275
HspAI GCGC 1 cut(s) 53
LmnI GCTCC 1 cut(s) 323
Lsp1109I GCAGC 7 cut(s) 42, 45, 124, 127, 130, 157, 210
LweI GCATC 2 cut(s) 70, 250
MaeI CTAG 2 cut(s) 27, 174
MaeII ACGT 1 cut(s) 116
MboII GAAGA 3 cut(s) 74, 173, 201
MhlI GDGCHC 2 cut(s) 230, 251
MluCI AATT 1 cut(s) 325
MlyI GAGTC 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 4 cut(s) 21, 157, 160, 185
MseI TTAA 1 cut(s) 328
MslI CAYNNNNRTG 2 cut(s) 18, 66
MspA1I CMGCKG 2 cut(s) 137, 201
MspI CCGG 2 cut(s) 238, 245
MspR9I CCNGG 3 cut(s) 18, 238, 246
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 5 cut(s) 85, 140, 143, 204, 238
NciI CCSGG 2 cut(s) 238, 246
NcoI CCATGG 1 cut(s) 67
NlaIII CATG 4 cut(s) 71, 134, 154, 275
NlaIV GGNNCC 1 cut(s) 93
NspI RCATGY 1 cut(s) 134
OliI CACNNNNGTG 1 cut(s) 18
PaeI GCATGC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 8 cut(s) 57, 60, 136, 139, 142, 145, 172, 200
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PpuMI RGGWCCY 1 cut(s) 92
Psp5II RGGWCCY 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 16
PspFI CCCAGC 1 cut(s) 275
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 2 cut(s) 92, 206
PspPPI RGGWCCY 1 cut(s) 92
PstI CTGCAG 2 cut(s) 90, 148
PstNI CAGNNNCTG 1 cut(s) 223
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
RseI CAYNNNNRTG 2 cut(s) 18, 66
SaqAI TTAA 1 cut(s) 328
SatI GCNGC 8 cut(s) 56, 59, 135, 138, 141, 144, 171, 199
Sau96I GGNCC 2 cut(s) 92, 206
SchI GAGTC 1 cut(s) 165
ScrFI CCNGG 3 cut(s) 18, 238, 246
SduI GDGCHC 2 cut(s) 230, 251
SetI ASST 4 cut(s) 22, 119, 196, 320
SfaNI GCATC 2 cut(s) 70, 250
SfcI CTRYAG 2 cut(s) 86, 144
SinI GGWCC 1 cut(s) 92
SmiMI CAYNNNNRTG 2 cut(s) 18, 66
SphI GCATGC 1 cut(s) 134
Sse9I AATT 1 cut(s) 325
SsiI CCGC 3 cut(s) 98, 135, 201
SspMI CTAG 2 cut(s) 27, 174
StyD4I CCNGG 3 cut(s) 16, 236, 244
StyI CCWWGG 1 cut(s) 67
TaiI ACGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 159
TasI AATT 1 cut(s) 325
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 1 cut(s) 328
Tru9I TTAA 1 cut(s) 328
TscAI CASTG 2 cut(s) 126, 224
TseI GCWGC 7 cut(s) 55, 58, 137, 140, 143, 170, 198
TspRI CASTG 2 cut(s) 126, 224
VpaK11BI GGWCC 1 cut(s) 92
XagI CCTNNNNNAGG 1 cut(s) 15
XceI RCATGY 1 cut(s) 134
XspI CTAG 2 cut(s) 27, 174
ZraI GACGTC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.