pycom15g16740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0016631
Physical Location & Seq
Reverse (-)
11744538 .. 11744852
315 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g16740.1

Sequence Viewer

Length: 315 bp
ATGTGTCACCCTTCAGGCGTGCCTAATTCGGTGAGACGGAGAGTGAGAGACTTGGCCGTGCTACAGCAGCATCGCAGGTGGCTTCTTCTGGAGGCGTATGTGGCGGTAGAGACGGCAGTGAACCTGCATGCAGCTACAGCTGCGGCCAGAAGGGTTGGAGAGGCTGCTGCTGGAGGTGGCAGCGGTGGCGGCAATACAAGGCGGTGCTTGTGCTCGCCGACGCGGCATCCGGGGTCGTTCCGGTGTAGGCAACACCATGCTGAGTACGCCTGGGGCGGTGGTCGGAAGTTGAGAGGAAATATGTCGAGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.26

Weight (kDa)

11.42

Isoelectric Point (pI)

75.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52342
fragaria_vesca FvH4_1g05030
prunus_persica Prupe.7G229700_v2.0.a1
pyrus_communis pycom02g04070 pycom15g16740
rosa_chinensis RchiOBHm_Chr2g0090641
rosa_laevigata RLG00000016127
rosa_roxburghii Rroxscaffold_2G00150930
rosa_rugosa Rorug02G0009700
rosa_samantha Rh2AG055600 Rh2BG054000 Rh2CG056300 Rh2DG055000
rosa_wichuraiana Rw2G004720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 66
Acc36I ACCTGC 2 cut(s) 66, 132
AccII CGCG 1 cut(s) 223
AciI CCGC 7 cut(s) 104, 143, 183, 189, 202, 223, 276
AcoI YGGCCR 2 cut(s) 54, 144
AfaI GTAC 1 cut(s) 266
AjnI CCWGG 1 cut(s) 269
AluBI AGCT 2 cut(s) 134, 140
AluI AGCT 2 cut(s) 134, 140
Alw21I GWGCWC 1 cut(s) 215
Alw26I GTCTC 3 cut(s) 28, 42, 104
AoxI GGCC 2 cut(s) 54, 144
ApeKI GCWGC 6 cut(s) 67, 131, 140, 164, 167, 180
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 215
BbvI GCAGC 6 cut(s) 79, 127, 143, 151, 154, 192
BceAI ACGGC 2 cut(s) 41, 129
BciT130I CCWGG 1 cut(s) 271
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 3 cut(s) 28, 42, 104
BfmI CTRYAG 2 cut(s) 62, 135
BfuAI ACCTGC 2 cut(s) 66, 132
BglI GCCNNNNNGGC 1 cut(s) 223
BisI GCNGC 9 cut(s) 68, 132, 141, 144, 165, 168, 181, 190, 224
BlsI GCNGC 9 cut(s) 69, 133, 142, 145, 166, 169, 182, 191, 225
Bme1390I CCNGG 2 cut(s) 231, 271
BmrFI CCNGG 2 cut(s) 231, 271
BmsI GCATC 2 cut(s) 79, 235
BpmI CTGGAG 2 cut(s) 110, 192
BpuMI CCSGG 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 230, 270
BsaWI WCCGGW 1 cut(s) 240
BseBI CCWGG 1 cut(s) 271
BseDI CCNNGG 2 cut(s) 230, 270
BseGI GGATG 1 cut(s) 226
BseMII CTCAG 1 cut(s) 252
BseXI GCAGC 6 cut(s) 79, 127, 143, 151, 154, 192
Bsh1236I CGCG 1 cut(s) 223
BshFI GGCC 2 cut(s) 56, 146
BsiHKAI GWGCWC 1 cut(s) 215
BsiSI CCGG 2 cut(s) 230, 241
BsmAI GTCTC 3 cut(s) 28, 42, 104
BsmBI CGTCTC 2 cut(s) 28, 104
BsnI GGCC 2 cut(s) 56, 146
Bsp1286I GDGCHC 1 cut(s) 215
BspACI CCGC 7 cut(s) 104, 143, 183, 189, 202, 223, 276
BspANI GGCC 2 cut(s) 56, 146
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 1 cut(s) 223
BspMI ACCTGC 2 cut(s) 66, 132
BssECI CCNNGG 2 cut(s) 230, 270
Bst2UI CCWGG 1 cut(s) 271
BstC8I GCNNGC 3 cut(s) 20, 129, 215
BstDEI CTNAG 1 cut(s) 261
BstF5I GGATG 1 cut(s) 226
BstFNI CGCG 1 cut(s) 223
BstMAI GTCTC 3 cut(s) 28, 42, 104
BstMWI GCNNNNNNNGC 8 cut(s) 67, 101, 137, 140, 186, 189, 223, 266
BstNI CCWGG 1 cut(s) 271
BstNSI RCATGY 1 cut(s) 131
BstSCI CCNGG 2 cut(s) 229, 269
BstSFI CTRYAG 2 cut(s) 62, 135
BstUI CGCG 1 cut(s) 223
BstV1I GCAGC 6 cut(s) 79, 127, 143, 151, 154, 192
BsuRI GGCC 2 cut(s) 56, 146
BtgZI GCGATG 1 cut(s) 56
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
BveI ACCTGC 2 cut(s) 66, 132
Cac8I GCNNGC 3 cut(s) 20, 129, 215
CseI GACGC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 265
CviAII CATG 2 cut(s) 128, 257
CviJI RGCY 6 cut(s) 56, 82, 134, 140, 146, 164
CviKI_1 RGCY 6 cut(s) 56, 82, 134, 140, 146, 164
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 1 cut(s) 261
EaeI YGGCCR 2 cut(s) 54, 144
EcoRII CCWGG 1 cut(s) 269
Esp3I CGTCTC 2 cut(s) 28, 104
FaeI CATG 2 cut(s) 131, 260
FaiI YATR 4 cut(s) 99, 129, 258, 302
FatI CATG 2 cut(s) 127, 256
Fnu4HI GCNGC 9 cut(s) 68, 132, 141, 144, 165, 168, 181, 190, 224
FokI GGATG 1 cut(s) 213
Fsp4HI GCNGC 9 cut(s) 68, 132, 141, 144, 165, 168, 181, 190, 224
GluI GCNGC 9 cut(s) 68, 132, 141, 144, 165, 168, 181, 190, 224
GsuI CTGGAG 2 cut(s) 110, 192
HaeIII GGCC 2 cut(s) 56, 146
HapII CCGG 2 cut(s) 230, 241
HgaI GACGC 1 cut(s) 229
Hin1II CATG 2 cut(s) 131, 260
HpaII CCGG 2 cut(s) 230, 241
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 285
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 1 cut(s) 223
HpyAV CCTTC 2 cut(s) 21, 144
HpyCH4V TGCA 2 cut(s) 127, 131
HpyF10VI GCNNNNNNNGC 8 cut(s) 67, 101, 137, 140, 186, 189, 223, 266
HpyF3I CTNAG 1 cut(s) 261
Hsp92II CATG 2 cut(s) 131, 260
LpnPI CCDG 9 cut(s) 61, 74, 137, 156, 160, 243, 254, 256, 283
Lsp1109I GCAGC 6 cut(s) 79, 127, 143, 151, 154, 192
LweI GCATC 2 cut(s) 79, 235
MaeIII GTNAC 1 cut(s) 5
MboII GAAGA 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 2 cut(s) 25, 310
MmeI TCCRAC 2 cut(s) 136, 263
MnlI CCTC 4 cut(s) 85, 154, 167, 287
MseI TTAA 1 cut(s) 313
MspA1I CMGCKG 2 cut(s) 140, 183
MspI CCGG 2 cut(s) 230, 241
MspR9I CCNGG 2 cut(s) 231, 271
MvaI CCWGG 1 cut(s) 271
MvnI CGCG 1 cut(s) 223
MwoI GCNNNNNNNGC 8 cut(s) 67, 101, 137, 140, 186, 189, 223, 266
NciI CCSGG 1 cut(s) 231
NlaIII CATG 2 cut(s) 131, 260
NmuCI GTSAC 1 cut(s) 5
NspI RCATGY 1 cut(s) 131
PaeI GCATGC 1 cut(s) 131
PaqCI CACCTGC 1 cut(s) 66
PkrI GCNGC 9 cut(s) 69, 133, 142, 145, 166, 169, 182, 191, 225
Psp6I CCWGG 1 cut(s) 269
PspGI CCWGG 1 cut(s) 269
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
SaqAI TTAA 1 cut(s) 313
SatI GCNGC 9 cut(s) 68, 132, 141, 144, 165, 168, 181, 190, 224
ScrFI CCNGG 2 cut(s) 231, 271
SduI GDGCHC 1 cut(s) 215
SetI ASST 5 cut(s) 80, 126, 136, 142, 178
SfaNI GCATC 2 cut(s) 79, 235
SfcI CTRYAG 2 cut(s) 62, 135
SphI GCATGC 1 cut(s) 131
Sse9I AATT 2 cut(s) 25, 310
SsiI CCGC 7 cut(s) 104, 143, 183, 189, 202, 223, 276
StyD4I CCNGG 2 cut(s) 229, 269
TaqI TCGA 1 cut(s) 305
TasI AATT 2 cut(s) 25, 310
TauI GCSGC 3 cut(s) 146, 192, 226
Tru1I TTAA 1 cut(s) 313
Tru9I TTAA 1 cut(s) 313
TscAI CASTG 1 cut(s) 123
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 6 cut(s) 67, 131, 140, 164, 167, 180
Tsp45I GTSAC 1 cut(s) 5
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 1 cut(s) 123
XceI RCATGY 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.