RchiOBHm_Chr2g0090641

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016631
Physical Location & Seq
Reverse (-)
4399318 .. 4400618
1301 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46588

Sequence Viewer

Length: 303 bp
ATGTGTCACCCGGCGGGTGTGTCTTCGGTTGGCCATAGAGACTTGGCGGTGCAAAATCGCCGGTGGCTGCTTCTTCTTCTGCAGGCGCGGGTAGATGGTGCAAGGAACTTGCAGGAACCTGCAGCTAGAGGAGTTAGAGAGGCTGCTGCTTCCGGTGGAGGTGGCAGCGGTGGTGGCGGAGCAAGGCGGTGTGTCTGCTCGCCGACCAGGCATCCGGGGTCGTTCCGGTGCAGGCAACACCATGCTGATCAGTATGTCTGGGGTGGTCGAACTGTGACAAGAAACAGGTCCAGTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.69

Weight (kDa)

11.57

Isoelectric Point (pI)

62.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52342
fragaria_vesca FvH4_1g05030
prunus_persica Prupe.7G229700_v2.0.a1
pyrus_communis pycom02g04070 pycom15g16740
rosa_chinensis RchiOBHm_Chr2g0090641
rosa_laevigata RLG00000016127
rosa_roxburghii Rroxscaffold_2G00150930
rosa_rugosa Rorug02G0009700
rosa_samantha Rh2AG055600 Rh2BG054000 Rh2CG056300 Rh2DG055000
rosa_wichuraiana Rw2G004720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 127
AccII CGCG 1 cut(s) 88
AciI CCGC 6 cut(s) 14, 47, 88, 168, 177, 187
AcoI YGGCCR 1 cut(s) 31
AfaI GTAC 1 cut(s) 295
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw26I GTCTC 1 cut(s) 33
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 5 cut(s) 67, 122, 143, 146, 165
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 288
AsuC2I CCSGG 2 cut(s) 11, 216
AvaII GGWCC 1 cut(s) 288
BalI TGGCCA 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 15
BbvI GCAGC 5 cut(s) 54, 130, 133, 134, 177
BccI CCATC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 208
BclI TGATCA 1 cut(s) 247
BcnI CCSGG 2 cut(s) 11, 216
BcoDI GTCTC 1 cut(s) 33
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 2 cut(s) 80, 120
BfuAI ACCTGC 1 cut(s) 127
BglI GCCNNNNNGGC 1 cut(s) 208
BisI GCNGC 5 cut(s) 68, 123, 144, 147, 166
BlsI GCNGC 5 cut(s) 69, 124, 145, 148, 167
BmcAI AGTACT 1 cut(s) 295
Bme1390I CCNGG 3 cut(s) 11, 208, 216
Bme18I GGWCC 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 3 cut(s) 11, 208, 216
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 15
BpuMI CCSGG 2 cut(s) 11, 216
BsaJI CCNNGG 1 cut(s) 215
BsaWI WCCGGW 2 cut(s) 152, 225
Bse118I RCCGGY 1 cut(s) 60
Bse1I ACTGG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 1 cut(s) 211
BseNI ACTGG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 144
BseXI GCAGC 5 cut(s) 54, 130, 133, 134, 177
BsgI GTGCAG 1 cut(s) 250
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 1 cut(s) 33
BsiSI CCGG 5 cut(s) 11, 61, 153, 215, 226
BsmAI GTCTC 1 cut(s) 33
BsnI GGCC 1 cut(s) 33
Bsp143I GATC 1 cut(s) 247
BspACI CCGC 6 cut(s) 14, 47, 88, 168, 177, 187
BspANI GGCC 1 cut(s) 33
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 117
BspMAI CTGCAG 2 cut(s) 84, 124
BspMI ACCTGC 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 60
BsrI ACTGG 1 cut(s) 291
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 1 cut(s) 274
BstC8I GCNNGC 3 cut(s) 84, 200, 233
BstF5I GGATG 1 cut(s) 211
BstFNI CGCG 1 cut(s) 88
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 1 cut(s) 250
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 2 cut(s) 174, 208
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 3 cut(s) 9, 206, 214
BstSFI CTRYAG 2 cut(s) 80, 120
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 5 cut(s) 54, 130, 133, 134, 177
BstV2I GAAGAC 1 cut(s) 15
BsuRI GGCC 1 cut(s) 33
BtsCI GGATG 1 cut(s) 211
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 3 cut(s) 84, 200, 233
CfoI GCGC 1 cut(s) 88
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 288
Csp6I GTAC 1 cut(s) 294
CviAII CATG 1 cut(s) 242
CviJI RGCY 4 cut(s) 33, 67, 125, 143
CviKI_1 RGCY 4 cut(s) 33, 67, 125, 143
CviQI GTAC 1 cut(s) 294
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
EaeI YGGCCR 1 cut(s) 31
EciI GGCGGA 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 206
FaeI CATG 1 cut(s) 245
FaiI YATR 3 cut(s) 36, 243, 255
FatI CATG 1 cut(s) 241
FauI CCCGC 2 cut(s) 7, 81
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 5 cut(s) 68, 123, 144, 147, 166
FokI GGATG 1 cut(s) 198
Fsp4HI GCNGC 5 cut(s) 68, 123, 144, 147, 166
FspBI CTAG 1 cut(s) 126
GlaI GCGC 1 cut(s) 87
GluI GCNGC 5 cut(s) 68, 123, 144, 147, 166
HaeIII GGCC 1 cut(s) 33
HapII CCGG 5 cut(s) 11, 61, 153, 215, 226
HhaI GCGC 1 cut(s) 88
Hin1II CATG 1 cut(s) 245
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HpaII CCGG 5 cut(s) 11, 61, 153, 215, 226
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4V TGCA 6 cut(s) 52, 82, 101, 112, 122, 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 208
Hsp92II CATG 1 cut(s) 245
HspAI GCGC 1 cut(s) 86
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 1 cut(s) 247
LmnI GCTCC 1 cut(s) 179
Lsp1109I GCAGC 5 cut(s) 54, 130, 133, 134, 177
LweI GCATC 1 cut(s) 220
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 2 cut(s) 5, 274
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 3 cut(s) 15, 65, 68
MlsI TGGCCA 1 cut(s) 33
MluCI AATT 1 cut(s) 298
MluNI TGGCCA 1 cut(s) 33
MnlI CCTC 3 cut(s) 122, 133, 152
Mox20I TGGCCA 1 cut(s) 33
MscI TGGCCA 1 cut(s) 33
MseI TTAA 1 cut(s) 301
Msp20I TGGCCA 1 cut(s) 33
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 5 cut(s) 11, 61, 153, 215, 226
MspR9I CCNGG 3 cut(s) 11, 208, 216
MvaI CCWGG 1 cut(s) 208
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 2 cut(s) 174, 208
NciI CCSGG 2 cut(s) 11, 216
NdeII GATC 1 cut(s) 247
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 2 cut(s) 5, 274
PkrI GCNGC 5 cut(s) 69, 124, 145, 148, 167
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 288
PstI CTGCAG 2 cut(s) 84, 124
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
SaqAI TTAA 1 cut(s) 301
SatI GCNGC 5 cut(s) 68, 123, 144, 147, 166
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 1 cut(s) 288
ScaI AGTACT 1 cut(s) 295
ScrFI CCNGG 3 cut(s) 11, 208, 216
SetI ASST 4 cut(s) 121, 127, 163, 290
SfaNI GCATC 1 cut(s) 220
SfcI CTRYAG 2 cut(s) 80, 120
SgrAI CRCCGGYG 1 cut(s) 60
SinI GGWCC 1 cut(s) 288
Sse9I AATT 1 cut(s) 298
SsiI CCGC 6 cut(s) 14, 47, 88, 168, 177, 187
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 3 cut(s) 9, 206, 214
TaaI ACNGT 1 cut(s) 274
TaqI TCGA 1 cut(s) 268
TasI AATT 1 cut(s) 298
TatI WGTACW 1 cut(s) 293
Tru1I TTAA 1 cut(s) 301
Tru9I TTAA 1 cut(s) 301
TseFI GTSAC 2 cut(s) 5, 274
TseI GCWGC 5 cut(s) 67, 122, 143, 146, 165
Tsp45I GTSAC 2 cut(s) 5, 274
VpaK11BI GGWCC 1 cut(s) 288
XspI CTAG 1 cut(s) 126
ZrmI AGTACT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.