pycom02g04070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0016631
Physical Location & Seq
Reverse (-)
2683806 .. 2684123
318 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g04070.1

Sequence Viewer

Length: 318 bp
ATGTGTCACCCTTCAGGCGTGCCTAATTTGGTGAGGTTGAGAGTTAGAGACTTGGCGGTGCTGCAGCAGCAGCATCGCAGATGGCTTCTTTTGCAGGCGCCTGTGGCGGTTGAGACGACAGCGAACCTGCATGCGGCTGCAGCTGCGGCCAGAAGGGTTGGAGAGGCTGCAGCTAGAGGTGGCAACGGTGGCGGCGATACTCGGTGGTGCTTGTGCTCGCCGACGCAGCATCCGGGTTCGTTCCGGTGTAGGCAACACCATGCTGAGTATGTTTGGAGTGGTGGCCGGAATTTGAGAAAAGATATGTCCAGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.52

Weight (kDa)

11.01

Isoelectric Point (pI)

69.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016631)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52342
fragaria_vesca FvH4_1g05030
prunus_persica Prupe.7G229700_v2.0.a1
pyrus_communis pycom02g04070 pycom15g16740
rosa_chinensis RchiOBHm_Chr2g0090641
rosa_laevigata RLG00000016127
rosa_roxburghii Rroxscaffold_2G00150930
rosa_rugosa Rorug02G0009700
rosa_samantha Rh2AG055600 Rh2BG054000 Rh2CG056300 Rh2DG055000
rosa_wichuraiana Rw2G004720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 135
AccB1I GGYRCC 1 cut(s) 97
AciI CCGC 5 cut(s) 56, 107, 134, 146, 192
AcoI YGGCCR 2 cut(s) 147, 283
AcsI RAATTY 1 cut(s) 289
AcyI GRCGYC 1 cut(s) 98
AfiI CCNNNNNNNGG 1 cut(s) 133
AluBI AGCT 2 cut(s) 143, 173
AluI AGCT 2 cut(s) 143, 173
Alw21I GWGCWC 1 cut(s) 218
Alw26I GTCTC 2 cut(s) 42, 107
AoxI GGCC 2 cut(s) 147, 283
ApoI RAATTY 1 cut(s) 289
AspLEI GCGC 1 cut(s) 100
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 43
BanI GGYRCC 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 218
BccI CCATC 1 cut(s) 75
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 2 cut(s) 42, 107
BfaI CTAG 1 cut(s) 174
BfmI CTRYAG 3 cut(s) 62, 138, 168
BfoI RGCGCY 1 cut(s) 101
BfuAI ACCTGC 1 cut(s) 135
Bme1390I CCNGG 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 2 cut(s) 82, 238
BpuMI CCSGG 1 cut(s) 234
BsaHI GRCGYC 1 cut(s) 98
BsaWI WCCGGW 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 309
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 309
BshFI GGCC 2 cut(s) 149, 285
BshNI GGYRCC 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 218
BsiSI CCGG 3 cut(s) 233, 244, 286
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 2 cut(s) 42, 107
BsmBI CGTCTC 1 cut(s) 107
BsnI GGCC 2 cut(s) 149, 285
Bsp1286I GDGCHC 1 cut(s) 218
BspACI CCGC 5 cut(s) 56, 107, 134, 146, 192
BspANI GGCC 2 cut(s) 149, 285
BspCNI CTCAG 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 99
BspMAI CTGCAG 3 cut(s) 66, 142, 172
BspMI ACCTGC 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 97
BsrI ACTGG 1 cut(s) 309
BssNI GRCGYC 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 188
BstACI GRCGYC 1 cut(s) 98
BstC8I GCNNGC 4 cut(s) 20, 96, 132, 218
BstDEI CTNAG 1 cut(s) 264
BstF5I GGATG 1 cut(s) 229
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 1 cut(s) 100
BstMAI GTCTC 2 cut(s) 42, 107
BstMWI GCNNNNNNNGC 9 cut(s) 67, 70, 91, 104, 140, 143, 146, 189, 226
BstNSI RCATGY 1 cut(s) 134
BstSCI CCNGG 1 cut(s) 232
BstSFI CTRYAG 3 cut(s) 62, 138, 168
BsuRI GGCC 2 cut(s) 149, 285
BtgZI GCGATG 1 cut(s) 59
BtsCI GGATG 1 cut(s) 229
BveI ACCTGC 1 cut(s) 135
Cac8I GCNNGC 4 cut(s) 20, 96, 132, 218
CfoI GCGC 1 cut(s) 100
CseI GACGC 1 cut(s) 232
CviAII CATG 2 cut(s) 131, 260
CviJI RGCY 7 cut(s) 85, 137, 143, 149, 167, 173, 285
CviKI_1 RGCY 7 cut(s) 85, 137, 143, 149, 167, 173, 285
DdeI CTNAG 1 cut(s) 264
DinI GGCGCC 1 cut(s) 99
EaeI YGGCCR 2 cut(s) 147, 283
EgeI GGCGCC 1 cut(s) 99
EheI GGCGCC 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 107
FaeI CATG 2 cut(s) 134, 263
FaiI YATR 4 cut(s) 132, 261, 270, 305
FatI CATG 2 cut(s) 130, 259
FokI GGATG 1 cut(s) 216
FspBI CTAG 1 cut(s) 174
GlaI GCGC 1 cut(s) 99
HaeII RGCGCY 1 cut(s) 101
HaeIII GGCC 2 cut(s) 149, 285
HapII CCGG 3 cut(s) 233, 244, 286
HgaI GACGC 1 cut(s) 232
HhaI GCGC 1 cut(s) 100
Hin1I GRCGYC 1 cut(s) 98
Hin1II CATG 2 cut(s) 134, 263
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HpaII CCGG 3 cut(s) 233, 244, 286
HphI GGTGA 1 cut(s) 43
Hpy99I CGWCG 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 21, 147
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4V TGCA 5 cut(s) 64, 94, 130, 140, 170
HpyF10VI GCNNNNNNNGC 9 cut(s) 67, 70, 91, 104, 140, 143, 146, 189, 226
HpyF3I CTNAG 1 cut(s) 264
Hsp92I GRCGYC 1 cut(s) 98
Hsp92II CATG 2 cut(s) 134, 263
HspAI GCGC 1 cut(s) 98
KasI GGCGCC 1 cut(s) 97
LpnPI CCDG 7 cut(s) 80, 114, 140, 163, 246, 257, 299
LweI GCATC 2 cut(s) 82, 238
MaeI CTAG 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 218
MluCI AATT 3 cut(s) 25, 289, 313
Mly113I GGCGCC 1 cut(s) 98
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 3 cut(s) 27, 157, 170
MseI TTAA 1 cut(s) 316
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 3 cut(s) 233, 244, 286
MspR9I CCNGG 1 cut(s) 234
MwoI GCNNNNNNNGC 9 cut(s) 67, 70, 91, 104, 140, 143, 146, 189, 226
NarI GGCGCC 1 cut(s) 98
NciI CCSGG 1 cut(s) 234
NlaIII CATG 2 cut(s) 134, 263
NlaIV GGNNCC 1 cut(s) 99
NmuCI GTSAC 1 cut(s) 5
NspI RCATGY 1 cut(s) 134
PaeI GCATGC 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PluTI GGCGCC 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 99
PstI CTGCAG 3 cut(s) 66, 142, 172
PvuII CAGCTG 1 cut(s) 143
SaqAI TTAA 1 cut(s) 316
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 218
SetI ASST 5 cut(s) 38, 129, 145, 175, 181
SfaNI GCATC 2 cut(s) 82, 238
SfcI CTRYAG 3 cut(s) 62, 138, 168
SfoI GGCGCC 1 cut(s) 99
SphI GCATGC 1 cut(s) 134
Sse9I AATT 3 cut(s) 25, 289, 313
SsiI CCGC 5 cut(s) 56, 107, 134, 146, 192
SspDI GGCGCC 1 cut(s) 97
SspMI CTAG 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 232
TaaI ACNGT 1 cut(s) 188
TasI AATT 3 cut(s) 25, 289, 313
TauI GCSGC 3 cut(s) 137, 149, 195
Tru1I TTAA 1 cut(s) 316
Tru9I TTAA 1 cut(s) 316
TseFI GTSAC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 5
XapI RAATTY 1 cut(s) 289
XceI RCATGY 1 cut(s) 134
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.