FvH4_1g05760

Ninja-family protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
3036186 .. 3039708
3523 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05760.t3

Sequence Viewer

Length: 1500 bp
ATGGAGGATGAGAGTGGACTTGAGCTTAGCTTGGGTCTTTCTTTTGGTGGGGGATCGTCTGTGAAGTCCAAGGGTAAAATTGGTGCTTCCTCGAATACTAGAGTGGAAGATGGTGATAGAGACAAAAAATTAGCGGATGATTTTAAAGACTTTCTTCATGGAGGGGCTCAGAAGCAAGAGTCAAGTAGTAGCTCTCAAAGAAGTGATTCAGTGAAACCTAAAGAAAATTTCTTTAATGACCTCTCCAAGGCCAACAGTGAAGCAGACACGTCAATGAACTTGAATGGGAGAGGAGTCTGGGTTGCAAAGAGTAACAAGTCTGATGAAGTAGAGGAAAGACAAACAGATGGTGGTAATAAACGCAAGACTTTGTTCGAAGAGATGAACAATCAAAAGAAGCATGAGAGAGAAGCTCATTACAGTGATATGCATGACAAGACGAGAGCATCTCACATTTCCATAACAGAAGATGGCTCTACTGCTGAAAATGAAGACGTGGCAGATTCTGAAGTGGAGGGCTCAGCCTCAAGGCTGATATCCCAACATGATGATGGCTCTAAGCGATTTGTTGGATCTGGTGACTCTTCTGATGCTCAAAAAGAGCTTCGCAGGTTTGGAGATTCAAGTAGCGTGGACCCAAATGGGCAGAAGAGGTTTAATATATCATCAGAAAATGATTACAAGGTCGGGAACGTGACATATGGCAGTCCGTTTTCTGTGCAATCAGTAAACATGATGAATCTGCCCTACCCTCTCCCTACGAAGGAGTCTAACCCTGTTGGTGCACCCAGCACGTCGGGCCATCTGATTCCTGGGATGATGCAGGTGATGCCTATTGCAAATAGTGAGCGATCAGGGCCTCAACCCATGAATCCTGGAAACTTGCCTGTTATGTTTGGCTATTCACCTGTACAGCTTCCAGTATTGGATAAGGATAATTCTTGGGGTGCTCCTCATACTCAACAATTTCACTATGCTGGCAGAAATCCACCAAACCCAGCTGGGATGCAACTAATTTCACATAATACATCTGAGGCTGCACCGTATGATGGGAGGATATTAGAACGGGCAAAAGGTGATGGGAAACAGCATGTCACAGAAGAGGGCTCCTCTTCTCAAGCAGAAGAAGACTTGAAAGTAAGCAGCACAGACCCAAGGACTAAAGATGCACCTGATTGCTCTATGGCAGAGGATTTCTCACTTGATTTTTCAGCTATAAAACCAGGCATTGCTGCAGAGATAAAATTTGGGGGATCTGGTTCCCGTCCAAATCTACCATGGGTTTCTACCAAAGGTCCAGGCCCCAATGGTAGGACAATTTCTGGTGTTACTTACAGATACAGCGCAAACCAAATCAAAATAGTGTGTGCTTGCCATGGCTCCCACATGTCCCCTGAGGAGTTTGTTCGGCATGCAAGTGAAGAGCCTTCTAATCCAGAAAGCGGCACTGTTTTGGCGACTGTCCCAAATGGTAATCATTCTGCCTCCCCTCAGAGCTGA

Protein Analysis

500

Amino Acids

53.73

Weight (kDa)

5.4

Isoelectric Point (pI)

50.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 453 - 479 6.8e-06 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010854)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 814
Acc36I ACCTGC 2 cut(s) 600, 814
AciI CCGC 2 cut(s) 134, 1443
AclWI GGATC 3 cut(s) 61, 580, 1261
AcsI RAATTY 2 cut(s) 226, 1244
AcuI CTGAAG 1 cut(s) 528
AfaI GTAC 1 cut(s) 912
AfiI CCNNNNNNNGG 5 cut(s) 247, 763, 1049, 1311, 1442
AflIII ACRYGT 2 cut(s) 267, 1386
AgsI TTSAA 3 cut(s) 283, 624, 1135
AjiI CACGTC 3 cut(s) 270, 496, 795
AjnI CCWGG 4 cut(s) 811, 874, 1222, 1297
AluBI AGCT 9 cut(s) 25, 30, 192, 413, 604, 916, 1001, 1214, 1497
AluI AGCT 9 cut(s) 25, 30, 192, 413, 604, 916, 1001, 1214, 1497
Alw21I GWGCWC 2 cut(s) 787, 952
Alw26I GTCTC 1 cut(s) 114
Alw44I GTGCAC 1 cut(s) 783
AlwI GGATC 3 cut(s) 61, 580, 1261
AlwNI CAGNNNCTG 1 cut(s) 506
AoxI GGCC 4 cut(s) 249, 799, 857, 1300
ApaLI GTGCAC 1 cut(s) 783
ApeKI GCWGC 3 cut(s) 1037, 1143, 1232
ApoI RAATTY 2 cut(s) 226, 1244
Asp700I GAANNNNTTC 1 cut(s) 205
AspLEI GCGC 1 cut(s) 1346
AspS9I GGNCC 5 cut(s) 634, 799, 857, 1295, 1301
AsuHPI GGTGA 5 cut(s) 125, 590, 838, 897, 1088
AsuII TTCGAA 1 cut(s) 375
AvaII GGWCC 2 cut(s) 634, 1295
AxyI CCTNAGG 1 cut(s) 1395
BaeGI GKGCMC 1 cut(s) 787
BanII GRGCYC 3 cut(s) 169, 521, 1109
BbsI GAAGAC 2 cut(s) 498, 1134
Bbv12I GWGCWC 2 cut(s) 787, 952
BbvI GCAGC 3 cut(s) 1024, 1155, 1219
BccI CCATC 7 cut(s) 104, 341, 464, 545, 810, 1043, 1073
BciT130I CCWGG 4 cut(s) 813, 876, 1224, 1299
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 1233
BfuAI ACCTGC 2 cut(s) 600, 814
BisI GCNGC 4 cut(s) 1038, 1144, 1233, 1444
BlpI GCTNAGC 2 cut(s) 26, 520
BlsI GCNGC 4 cut(s) 1039, 1145, 1234, 1445
Bme1390I CCNGG 4 cut(s) 813, 876, 1224, 1299
Bme18I GGWCC 2 cut(s) 634, 1295
BmgBI CACGTC 3 cut(s) 270, 496, 795
BmgT120I GGNCC 5 cut(s) 634, 799, 857, 1295, 1301
BmiI GGNNCC 5 cut(s) 636, 1108, 1261, 1303, 1381
BmrFI CCNGG 4 cut(s) 813, 876, 1224, 1299
BmsI GCATC 6 cut(s) 455, 580, 810, 819, 996, 1156
BpiI GAAGAC 2 cut(s) 498, 1134
BplI GAGNNNNNCTC 8 cut(s) 397, 429, 433, 465, 1094, 1126, 1181, 1213
Bpu1102I GCTNAGC 2 cut(s) 26, 520
Bpu14I TTCGAA 1 cut(s) 375
BpuEI CTTGAG 3 cut(s) 41, 511, 1101
BsaJI CCNNGG 6 cut(s) 69, 246, 812, 1154, 1277, 1375
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 5 cut(s) 247, 763, 1049, 1311, 1442
Bse1I ACTGG 1 cut(s) 920
Bse21I CCTNAGG 1 cut(s) 1395
Bse3DI GCAATG 1 cut(s) 1227
BseBI CCWGG 4 cut(s) 813, 876, 1224, 1299
BseDI CCNNGG 6 cut(s) 69, 246, 812, 1154, 1277, 1375
BseGI GGATG 4 cut(s) 13, 142, 822, 1011
BseLI CCNNNNNNNGG 5 cut(s) 247, 763, 1049, 1311, 1442
BseMI GCAATG 1 cut(s) 1227
BseMII CTCAG 4 cut(s) 182, 534, 1023, 1386
BseNI ACTGG 1 cut(s) 920
BseRI GAGGAG 4 cut(s) 306, 942, 1099, 1412
BseSI GKGCMC 1 cut(s) 787
BseXI GCAGC 3 cut(s) 1024, 1155, 1219
BseYI CCCAGC 3 cut(s) 788, 997, 1001
BsgI GTGCAG 1 cut(s) 1023
BshFI GGCC 4 cut(s) 251, 801, 859, 1302
BsiHKAI GWGCWC 2 cut(s) 787, 952
BslFI GGGAC 2 cut(s) 1375, 1448
BslI CCNNNNNNNGG 5 cut(s) 247, 763, 1049, 1311, 1442
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 2 cut(s) 1375, 1448
BsnI GGCC 4 cut(s) 251, 801, 859, 1302
Bsp119I TTCGAA 1 cut(s) 375
Bsp1286I GDGCHC 5 cut(s) 169, 521, 787, 952, 1109
Bsp1407I TGTACA 1 cut(s) 910
Bsp143I GATC 4 cut(s) 53, 572, 851, 1253
Bsp1720I GCTNAGC 2 cut(s) 26, 520
Bsp19I CCATGG 2 cut(s) 1277, 1375
BspACI CCGC 2 cut(s) 134, 1443
BspANI GGCC 4 cut(s) 251, 801, 859, 1302
BspCNI CTCAG 4 cut(s) 181, 533, 1024, 1387
BspLI GGNNCC 5 cut(s) 636, 1108, 1261, 1303, 1381
BspMAI CTGCAG 1 cut(s) 1237
BspMI ACCTGC 2 cut(s) 600, 814
BspPI GGATC 3 cut(s) 61, 580, 1261
BspQI GCTCTTC 1 cut(s) 1416
BspT104I TTCGAA 1 cut(s) 375
BsrDI GCAATG 1 cut(s) 1227
BsrGI TGTACA 1 cut(s) 910
BsrI ACTGG 1 cut(s) 920
BssECI CCNNGG 6 cut(s) 69, 246, 812, 1154, 1277, 1375
BssMI GATC 4 cut(s) 53, 572, 851, 1253
BssT1I CCWWGG 5 cut(s) 69, 246, 1154, 1277, 1375
Bst2UI CCWGG 4 cut(s) 813, 876, 1224, 1299
Bst4CI ACNGT 5 cut(s) 257, 422, 1044, 1450, 1462
Bst6I CTCTTC 6 cut(s) 372, 589, 644, 1095, 1117, 1416
BstAPI GCANNNNNTGC 1 cut(s) 829
BstAUI TGTACA 1 cut(s) 910
BstBI TTCGAA 1 cut(s) 375
BstC8I GCNNGC 3 cut(s) 979, 1372, 1413
BstDEI CTNAG 7 cut(s) 26, 168, 520, 558, 1032, 1395, 1491
BstDSI CCRYGG 2 cut(s) 1277, 1375
BstENI CCTNNNNNAGG 1 cut(s) 245
BstF5I GGATG 4 cut(s) 13, 142, 822, 1011
BstHHI GCGC 1 cut(s) 1346
BstKTI GATC 4 cut(s) 56, 575, 854, 1256
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 4 cut(s) 53, 572, 851, 1253
BstMWI GCNNNNNNNGC 3 cut(s) 798, 829, 856
BstNI CCWGG 4 cut(s) 813, 876, 1224, 1299
BstNSI RCATGY 3 cut(s) 1094, 1390, 1415
BstSCI CCNGG 4 cut(s) 811, 874, 1222, 1297
BstSFI CTRYAG 1 cut(s) 1233
BstSLI GKGCMC 1 cut(s) 787
BstV1I GCAGC 3 cut(s) 1024, 1155, 1219
BstV2I GAAGAC 2 cut(s) 498, 1134
BstX2I RGATCY 2 cut(s) 572, 1253
BstYI RGATCY 2 cut(s) 572, 1253
Bsu36I CCTNAGG 1 cut(s) 1395
BsuRI GGCC 4 cut(s) 251, 801, 859, 1302
BtgI CCRYGG 2 cut(s) 1277, 1375
BtrI CACGTC 3 cut(s) 270, 496, 795
BtsCI GGATG 4 cut(s) 13, 142, 822, 1011
BtsIMutI CAGTG 4 cut(s) 216, 262, 427, 1446
BveI ACCTGC 2 cut(s) 600, 814
Cac8I GCNNGC 3 cut(s) 979, 1372, 1413
CaiI CAGNNNCTG 1 cut(s) 506
CfoI GCGC 1 cut(s) 1346
Cfr13I GGNCC 5 cut(s) 634, 799, 857, 1295, 1301
Csp6I GTAC 1 cut(s) 911
CspCI CAANNNNNGTGG 2 cut(s) 612, 647
CviQI GTAC 1 cut(s) 911
DdeI CTNAG 7 cut(s) 26, 168, 520, 558, 1032, 1395, 1491
DpnI GATC 4 cut(s) 55, 574, 853, 1255
DpnII GATC 4 cut(s) 53, 572, 851, 1253
DraI TTTAAA 1 cut(s) 145
Eam1104I CTCTTC 6 cut(s) 372, 589, 644, 1095, 1117, 1416
EarI CTCTTC 6 cut(s) 372, 589, 644, 1095, 1117, 1416
Eco130I CCWWGG 5 cut(s) 69, 246, 1154, 1277, 1375
Eco24I GRGCYC 3 cut(s) 169, 521, 1109
Eco32I GATATC 1 cut(s) 537
Eco47I GGWCC 2 cut(s) 634, 1295
Eco57I CTGAAG 1 cut(s) 528
Eco81I CCTNAGG 1 cut(s) 1395
EcoNI CCTNNNNNAGG 1 cut(s) 245
EcoO109I RGGNCCY 2 cut(s) 857, 1301
EcoRII CCWGG 4 cut(s) 811, 874, 1222, 1297
EcoRV GATATC 1 cut(s) 537
EcoT14I CCWWGG 5 cut(s) 69, 246, 1154, 1277, 1375
EcoT22I ATGCAT 1 cut(s) 432
EcoT38I GRGCYC 3 cut(s) 169, 521, 1109
ErhI CCWWGG 5 cut(s) 69, 246, 1154, 1277, 1375
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FaqI GGGAC 2 cut(s) 1375, 1448
FauNDI CATATG 1 cut(s) 700
Fnu4HI GCNGC 4 cut(s) 1038, 1144, 1233, 1444
FokI GGATG 4 cut(s) 20, 149, 829, 1018
FriOI GRGCYC 3 cut(s) 169, 521, 1109
Fsp4HI GCNGC 4 cut(s) 1038, 1144, 1233, 1444
FspBI CTAG 1 cut(s) 99
GlaI GCGC 1 cut(s) 1345
GluI GCNGC 4 cut(s) 1038, 1144, 1233, 1444
GsaI CCCAGC 3 cut(s) 792, 1001, 1005
HaeIII GGCC 4 cut(s) 251, 801, 859, 1302
HhaI GCGC 1 cut(s) 1346
Hin6I GCGC 1 cut(s) 1344
HinP1I GCGC 1 cut(s) 1344
HphI GGTGA 5 cut(s) 125, 590, 838, 897, 1088
Hpy166II GTNNAC 4 cut(s) 17, 634, 730, 785
Hpy188I TCNGA 8 cut(s) 171, 322, 508, 589, 670, 807, 1033, 1494
Hpy188III TCNNGA 2 cut(s) 688, 1436
Hpy8I GTNNAC 4 cut(s) 17, 634, 730, 785
Hpy99I CGWCG 1 cut(s) 799
HpyAV CCTTC 2 cut(s) 757, 1437
HpyCH4III ACNGT 5 cut(s) 257, 422, 1044, 1450, 1462
HpyCH4IV ACGT 4 cut(s) 269, 495, 693, 794
HpyF10VI GCNNNNNNNGC 3 cut(s) 798, 829, 856
HpyF3I CTNAG 7 cut(s) 26, 168, 520, 558, 1032, 1395, 1491
HpySE526I ACGT 4 cut(s) 269, 495, 693, 794
HspAI GCGC 1 cut(s) 1344
Kzo9I GATC 4 cut(s) 53, 572, 851, 1253
LguI GCTCTTC 1 cut(s) 1416
LmnI GCTCC 3 cut(s) 955, 1112, 1385
Lsp1109I GCAGC 3 cut(s) 1024, 1155, 1219
LweI GCATC 6 cut(s) 455, 580, 810, 819, 996, 1156
MaeI CTAG 1 cut(s) 99
MaeII ACGT 4 cut(s) 269, 495, 693, 794
MaeIII GTNAC 5 cut(s) 311, 578, 694, 1093, 1327
MalI GATC 4 cut(s) 55, 574, 853, 1255
MboI GATC 4 cut(s) 53, 572, 851, 1253
MflI RGATCY 2 cut(s) 572, 1253
MhlI GDGCHC 5 cut(s) 169, 521, 787, 952, 1109
MluCI AATT 8 cut(s) 78, 128, 226, 937, 965, 1014, 1244, 1317
MlyI GAGTC 4 cut(s) 188, 303, 575, 776
MmeI TCCRAC 1 cut(s) 550
Mph1103I ATGCAT 1 cut(s) 432
MroXI GAANNNNTTC 1 cut(s) 205
MseI TTAA 3 cut(s) 144, 234, 657
MslI CAYNNNNRTG 4 cut(s) 272, 420, 549, 1416
MspA1I CMGCKG 1 cut(s) 1001
MspR9I CCNGG 4 cut(s) 813, 876, 1224, 1299
MvaI CCWGG 4 cut(s) 813, 876, 1224, 1299
MwoI GCNNNNNNNGC 3 cut(s) 798, 829, 856
NcoI CCATGG 2 cut(s) 1277, 1375
NdeI CATATG 1 cut(s) 700
NdeII GATC 4 cut(s) 53, 572, 851, 1253
NlaIV GGNNCC 5 cut(s) 636, 1108, 1261, 1303, 1381
NmuCI GTSAC 3 cut(s) 578, 694, 1093
NsiI ATGCAT 1 cut(s) 432
NspI RCATGY 3 cut(s) 1094, 1390, 1415
NspV TTCGAA 1 cut(s) 375
PaeI GCATGC 1 cut(s) 1415
PaqCI CACCTGC 1 cut(s) 814
PciI ACATGT 1 cut(s) 1386
PciSI GCTCTTC 1 cut(s) 1416
PdmI GAANNNNTTC 1 cut(s) 205
PfeI GAWTC 6 cut(s) 206, 503, 620, 739, 808, 871
PfoI TCCNGGA 1 cut(s) 874
PkrI GCNGC 4 cut(s) 1039, 1145, 1234, 1445
PleI GAGTC 4 cut(s) 187, 302, 575, 775
PpsI GAGTC 4 cut(s) 187, 302, 575, 775
PscI ACATGT 1 cut(s) 1386
Psp6I CCWGG 4 cut(s) 811, 874, 1222, 1297
PspFI CCCAGC 3 cut(s) 788, 997, 1001
PspGI CCWGG 4 cut(s) 811, 874, 1222, 1297
PspN4I GGNNCC 5 cut(s) 636, 1108, 1261, 1303, 1381
PspPI GGNCC 5 cut(s) 634, 799, 857, 1295, 1301
PstI CTGCAG 1 cut(s) 1237
PstNI CAGNNNCTG 1 cut(s) 506
PsuI RGATCY 2 cut(s) 572, 1253
PvuII CAGCTG 1 cut(s) 1001
RsaI GTAC 1 cut(s) 912
RsaNI GTAC 1 cut(s) 911
RseI CAYNNNNRTG 4 cut(s) 272, 420, 549, 1416
SapI GCTCTTC 1 cut(s) 1416
SaqAI TTAA 3 cut(s) 144, 234, 657
SatI GCNGC 4 cut(s) 1038, 1144, 1233, 1444
Sau3AI GATC 4 cut(s) 53, 572, 851, 1253
Sau96I GGNCC 5 cut(s) 634, 799, 857, 1295, 1301
SchI GAGTC 4 cut(s) 188, 303, 575, 776
ScrFI CCNGG 4 cut(s) 813, 876, 1224, 1299
SduI GDGCHC 5 cut(s) 169, 521, 787, 952, 1109
SfaNI GCATC 6 cut(s) 455, 580, 810, 819, 996, 1156
SfcI CTRYAG 1 cut(s) 1233
SfuI TTCGAA 1 cut(s) 375
SinI GGWCC 2 cut(s) 634, 1295
SmiMI CAYNNNNRTG 4 cut(s) 272, 420, 549, 1416
SmlI CTYRAG 3 cut(s) 20, 526, 1116
SmoI CTYRAG 3 cut(s) 20, 526, 1116
SphI GCATGC 1 cut(s) 1415
Sse9I AATT 8 cut(s) 78, 128, 226, 937, 965, 1014, 1244, 1317
SsiI CCGC 2 cut(s) 134, 1443
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 4 cut(s) 811, 874, 1222, 1297
StyI CCWWGG 5 cut(s) 69, 246, 1154, 1277, 1375
TaaI ACNGT 5 cut(s) 257, 422, 1044, 1450, 1462
TaiI ACGT 4 cut(s) 272, 498, 696, 797
TaqI TCGA 2 cut(s) 92, 375
TasI AATT 8 cut(s) 78, 128, 226, 937, 965, 1014, 1244, 1317
TatI WGTACW 1 cut(s) 910
TauI GCSGC 1 cut(s) 1446
TfiI GAWTC 6 cut(s) 206, 503, 620, 739, 808, 871
Tru1I TTAA 3 cut(s) 144, 234, 657
Tru9I TTAA 3 cut(s) 144, 234, 657
TscAI CASTG 4 cut(s) 216, 262, 427, 1453
TseFI GTSAC 3 cut(s) 578, 694, 1093
TseI GCWGC 3 cut(s) 1037, 1143, 1232
Tsp45I GTSAC 3 cut(s) 578, 694, 1093
TspDTI ATGAA 7 cut(s) 146, 290, 339, 398, 504, 752, 884
TspGWI ACGGA 1 cut(s) 699
TspRI CASTG 4 cut(s) 216, 262, 427, 1453
VneI GTGCAC 1 cut(s) 783
VpaK11BI GGWCC 2 cut(s) 634, 1295
XagI CCTNNNNNAGG 1 cut(s) 245
XapI RAATTY 2 cut(s) 226, 1244
XceI RCATGY 3 cut(s) 1094, 1390, 1415
XcmI CCANNNNNNNNNTGG 3 cut(s) 548, 809, 1275
XmnI GAANNNNTTC 1 cut(s) 205
XspI CTAG 1 cut(s) 99
Zsp2I ATGCAT 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.