Ninja-family protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G28910 AT4G28910 AT4G28910 |
| fragaria_vesca | FvH4_1g05760 FvH4_1g05760 FvH4_1g05760 |
| malus_domestica | MD02G1058800.v1.1 MD15G1193100.v1.1 |
| prunus_persica | Prupe.7G224200_v2.0.a1 |
| pyrus_communis | pycom02g04760 pycom15g17290 |
| rosa_chinensis | RchiOBHm_Chr2g0091401 |
| rosa_laevigata | RLG00000016221 |
| rosa_roxburghii | Rroxscaffold_2G00150110 |
| rosa_rugosa | Rorug02G0017500 |
| rosa_samantha | Rh2AG062500 Rh2BG061500 Rh2CG063600 Rh2DG062100 |
| rosa_wichuraiana | Rw2G005770 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 811 |
| Acc36I | ACCTGC | 2 cut(s) | 600, 811 |
| AccB1I | GGYRCC | 1 cut(s) | 83 |
| AccBSI | CCGCTC | 1 cut(s) | 104 |
| AciI | CCGC | 5 cut(s) | 104, 1178, 1226, 1255, 1434 |
| AclWI | GGATC | 5 cut(s) | 61, 580, 629, 642, 1252 |
| AcsI | RAATTY | 1 cut(s) | 1235 |
| AcuI | CTGAAG | 3 cut(s) | 486, 528, 1110 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 247, 1302, 1433 |
| AflIII | ACRYGT | 1 cut(s) | 1377 |
| AgsI | TTSAA | 3 cut(s) | 283, 377, 624 |
| AjiI | CACGTC | 1 cut(s) | 496 |
| AjnI | CCWGG | 4 cut(s) | 808, 871, 1213, 1288 |
| AluBI | AGCT | 9 cut(s) | 25, 30, 192, 413, 604, 913, 995, 1205, 1488 |
| AluI | AGCT | 9 cut(s) | 25, 30, 192, 413, 604, 913, 995, 1205, 1488 |
| Alw26I | GTCTC | 1 cut(s) | 114 |
| AlwI | GGATC | 5 cut(s) | 61, 580, 629, 642, 1252 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 350, 506 |
| AoxI | GGCC | 3 cut(s) | 249, 796, 1291 |
| ApeKI | GCWGC | 5 cut(s) | 302, 1031, 1134, 1223, 1472 |
| ApoI | RAATTY | 1 cut(s) | 1235 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1220, 1252 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 205 |
| AspLEI | GCGC | 1 cut(s) | 1337 |
| AspS9I | GGNCC | 4 cut(s) | 779, 944, 1286, 1292 |
| AsuHPI | GGTGA | 6 cut(s) | 125, 269, 590, 835, 894, 1079 |
| AvaII | GGWCC | 3 cut(s) | 779, 944, 1286 |
| AxyI | CCTNAGG | 1 cut(s) | 219 |
| BamHI | GGATCC | 1 cut(s) | 634 |
| BanI | GGYRCC | 1 cut(s) | 83 |
| BanII | GRGCYC | 3 cut(s) | 169, 521, 1100 |
| BbsI | GAAGAC | 2 cut(s) | 498, 1125 |
| BbvI | GCAGC | 5 cut(s) | 289, 1018, 1146, 1210, 1459 |
| BccI | CCATC | 5 cut(s) | 464, 545, 807, 1037, 1064 |
| BciT130I | CCWGG | 4 cut(s) | 810, 873, 1215, 1290 |
| BcoDI | GTCTC | 1 cut(s) | 114 |
| BfaI | CTAG | 2 cut(s) | 99, 131 |
| BfuAI | ACCTGC | 2 cut(s) | 600, 811 |
| BisI | GCNGC | 6 cut(s) | 303, 1032, 1135, 1224, 1435, 1473 |
| BlpI | GCTNAGC | 2 cut(s) | 26, 520 |
| BlsI | GCNGC | 6 cut(s) | 304, 1033, 1136, 1225, 1436, 1474 |
| Bme1390I | CCNGG | 4 cut(s) | 810, 873, 1215, 1290 |
| Bme18I | GGWCC | 3 cut(s) | 779, 944, 1286 |
| BmgBI | CACGTC | 1 cut(s) | 496 |
| BmgT120I | GGNCC | 4 cut(s) | 779, 944, 1286, 1292 |
| BmiI | GGNNCC | 9 cut(s) | 85, 556, 636, 945, 946, 1099, 1252, 1294, 1372 |
| BmrFI | CCNGG | 4 cut(s) | 810, 873, 1215, 1290 |
| BmsI | GCATC | 8 cut(s) | 250, 337, 455, 580, 807, 816, 990, 1147 |
| BpiI | GAAGAC | 2 cut(s) | 498, 1125 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 397, 429, 1085, 1117, 1172, 1204 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 26, 520 |
| BpuEI | CTTGAG | 3 cut(s) | 41, 511, 1092 |
| BsaJI | CCNNGG | 5 cut(s) | 69, 246, 1145, 1268, 1366 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 539, 569 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 247, 1302, 1433 |
| Bse1I | ACTGG | 1 cut(s) | 884 |
| Bse21I | CCTNAGG | 1 cut(s) | 219 |
| BseBI | CCWGG | 4 cut(s) | 810, 873, 1215, 1290 |
| BseDI | CCNNGG | 5 cut(s) | 69, 246, 1145, 1268, 1366 |
| BseGI | GGATG | 2 cut(s) | 13, 446 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 247, 1302, 1433 |
| BseMII | CTCAG | 3 cut(s) | 182, 534, 968 |
| BseNI | ACTGG | 1 cut(s) | 884 |
| BseRI | GAGGAG | 3 cut(s) | 79, 306, 1090 |
| BseXI | GCAGC | 5 cut(s) | 289, 1018, 1146, 1210, 1459 |
| BseYI | CCCAGC | 2 cut(s) | 785, 991 |
| BsgI | GTGCAG | 1 cut(s) | 1017 |
| BshFI | GGCC | 3 cut(s) | 251, 798, 1293 |
| BshNI | GGYRCC | 1 cut(s) | 83 |
| BslFI | GGGAC | 4 cut(s) | 868, 930, 1366, 1439 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 247, 1302, 1433 |
| BsmAI | GTCTC | 1 cut(s) | 114 |
| BsmFI | GGGAC | 4 cut(s) | 868, 930, 1366, 1439 |
| BsnI | GGCC | 3 cut(s) | 251, 798, 1293 |
| Bsp1286I | GDGCHC | 3 cut(s) | 169, 521, 1100 |
| Bsp143I | GATC | 5 cut(s) | 53, 572, 634, 1165, 1244 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 26, 520 |
| Bsp19I | CCATGG | 1 cut(s) | 1268 |
| BspACI | CCGC | 5 cut(s) | 104, 1178, 1226, 1255, 1434 |
| BspANI | GGCC | 3 cut(s) | 251, 798, 1293 |
| BspCNI | CTCAG | 3 cut(s) | 181, 533, 967 |
| BspLI | GGNNCC | 9 cut(s) | 85, 556, 636, 945, 946, 1099, 1252, 1294, 1372 |
| BspMI | ACCTGC | 2 cut(s) | 600, 811 |
| BspPI | GGATC | 5 cut(s) | 61, 580, 629, 642, 1252 |
| BspQI | GCTCTTC | 1 cut(s) | 1407 |
| BspT107I | GGYRCC | 1 cut(s) | 83 |
| BsrBI | CCGCTC | 1 cut(s) | 104 |
| BsrI | ACTGG | 1 cut(s) | 884 |
| BssECI | CCNNGG | 5 cut(s) | 69, 246, 1145, 1268, 1366 |
| BssMI | GATC | 5 cut(s) | 53, 572, 634, 1165, 1244 |
| BssT1I | CCWWGG | 4 cut(s) | 69, 246, 1145, 1268 |
| Bst2UI | CCWGG | 4 cut(s) | 810, 873, 1215, 1290 |
| Bst4CI | ACNGT | 4 cut(s) | 849, 1038, 1370, 1453 |
| Bst6I | CTCTTC | 6 cut(s) | 372, 589, 644, 1086, 1108, 1407 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 826 |
| BstC8I | GCNNGC | 3 cut(s) | 973, 1363, 1404 |
| BstDEI | CTNAG | 6 cut(s) | 26, 168, 219, 520, 954, 1482 |
| BstDSI | CCRYGG | 2 cut(s) | 1268, 1366 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 245 |
| BstF5I | GGATG | 2 cut(s) | 13, 446 |
| BstHHI | GCGC | 1 cut(s) | 1337 |
| BstKTI | GATC | 5 cut(s) | 56, 575, 637, 1168, 1247 |
| BstMAI | GTCTC | 1 cut(s) | 114 |
| BstMBI | GATC | 5 cut(s) | 53, 572, 634, 1165, 1244 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 795, 826, 1478 |
| BstNI | CCWGG | 4 cut(s) | 810, 873, 1215, 1290 |
| BstNSI | RCATGY | 3 cut(s) | 1085, 1381, 1406 |
| BstSCI | CCNGG | 4 cut(s) | 808, 871, 1213, 1288 |
| BstV1I | GCAGC | 5 cut(s) | 289, 1018, 1146, 1210, 1459 |
| BstV2I | GAAGAC | 2 cut(s) | 498, 1125 |
| BstX2I | RGATCY | 4 cut(s) | 53, 572, 634, 1244 |
| BstYI | RGATCY | 4 cut(s) | 53, 572, 634, 1244 |
| Bsu36I | CCTNAGG | 1 cut(s) | 219 |
| BsuRI | GGCC | 3 cut(s) | 251, 798, 1293 |
| BtgI | CCRYGG | 2 cut(s) | 1268, 1366 |
| BtrI | CACGTC | 1 cut(s) | 496 |
| BtsCI | GGATG | 2 cut(s) | 13, 446 |
| BtsIMutI | CAGTG | 3 cut(s) | 216, 420, 1086 |
| BveI | ACCTGC | 2 cut(s) | 600, 811 |
| Cac8I | GCNNGC | 3 cut(s) | 973, 1363, 1404 |
| CaiI | CAGNNNCTG | 2 cut(s) | 350, 506 |
| CfoI | GCGC | 1 cut(s) | 1337 |
| Cfr13I | GGNCC | 4 cut(s) | 779, 944, 1286, 1292 |
| CseI | GACGC | 1 cut(s) | 1037 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 612, 647 |
| DdeI | CTNAG | 6 cut(s) | 26, 168, 219, 520, 954, 1482 |
| DpnI | GATC | 5 cut(s) | 55, 574, 636, 1167, 1246 |
| DpnII | GATC | 5 cut(s) | 53, 572, 634, 1165, 1244 |
| DraI | TTTAAA | 1 cut(s) | 145 |
| Eam1104I | CTCTTC | 6 cut(s) | 372, 589, 644, 1086, 1108, 1407 |
| EarI | CTCTTC | 6 cut(s) | 372, 589, 644, 1086, 1108, 1407 |
| EciI | GGCGGA | 1 cut(s) | 1193 |
| Eco130I | CCWWGG | 4 cut(s) | 69, 246, 1145, 1268 |
| Eco24I | GRGCYC | 3 cut(s) | 169, 521, 1100 |
| Eco32I | GATATC | 1 cut(s) | 537 |
| Eco47I | GGWCC | 3 cut(s) | 779, 944, 1286 |
| Eco57I | CTGAAG | 3 cut(s) | 486, 528, 1110 |
| Eco81I | CCTNAGG | 1 cut(s) | 219 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 245 |
| EcoO109I | RGGNCCY | 2 cut(s) | 944, 1292 |
| EcoRII | CCWGG | 4 cut(s) | 808, 871, 1213, 1288 |
| EcoRV | GATATC | 1 cut(s) | 537 |
| EcoT14I | CCWWGG | 4 cut(s) | 69, 246, 1145, 1268 |
| EcoT22I | ATGCAT | 1 cut(s) | 432 |
| EcoT38I | GRGCYC | 3 cut(s) | 169, 521, 1100 |
| ErhI | CCWWGG | 4 cut(s) | 69, 246, 1145, 1268 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 138, 170, 212, 244 |
| FaqI | GGGAC | 4 cut(s) | 868, 930, 1366, 1439 |
| FauI | CCCGC | 1 cut(s) | 1262 |
| Fnu4HI | GCNGC | 6 cut(s) | 303, 1032, 1135, 1224, 1435, 1473 |
| FokI | GGATG | 2 cut(s) | 20, 433 |
| FriOI | GRGCYC | 3 cut(s) | 169, 521, 1100 |
| Fsp4HI | GCNGC | 6 cut(s) | 303, 1032, 1135, 1224, 1435, 1473 |
| FspBI | CTAG | 2 cut(s) | 99, 131 |
| GlaI | GCGC | 1 cut(s) | 1336 |
| GluI | GCNGC | 6 cut(s) | 303, 1032, 1135, 1224, 1435, 1473 |
| GsaI | CCCAGC | 2 cut(s) | 789, 995 |
| HaeIII | GGCC | 3 cut(s) | 251, 798, 1293 |
| HgaI | GACGC | 1 cut(s) | 1037 |
| HhaI | GCGC | 1 cut(s) | 1337 |
| Hin6I | GCGC | 1 cut(s) | 1335 |
| HinP1I | GCGC | 1 cut(s) | 1335 |
| HphI | GGTGA | 6 cut(s) | 125, 269, 590, 835, 894, 1079 |
| Hpy166II | GTNNAC | 4 cut(s) | 17, 730, 782, 845 |
| Hpy188I | TCNGA | 8 cut(s) | 171, 322, 508, 589, 670, 804, 1027, 1485 |
| Hpy188III | TCNNGA | 3 cut(s) | 757, 1193, 1427 |
| Hpy8I | GTNNAC | 4 cut(s) | 17, 730, 782, 845 |
| HpyAV | CCTTC | 3 cut(s) | 104, 754, 1428 |
| HpyCH4III | ACNGT | 4 cut(s) | 849, 1038, 1370, 1453 |
| HpyCH4IV | ACGT | 2 cut(s) | 495, 698 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 795, 826, 1478 |
| HpyF3I | CTNAG | 6 cut(s) | 26, 168, 219, 520, 954, 1482 |
| HpySE526I | ACGT | 2 cut(s) | 495, 698 |
| HspAI | GCGC | 1 cut(s) | 1335 |
| KflI | GGGWCCC | 1 cut(s) | 944 |
| Kzo9I | GATC | 5 cut(s) | 53, 572, 634, 1165, 1244 |
| LguI | GCTCTTC | 1 cut(s) | 1407 |
| LmnI | GCTCC | 2 cut(s) | 560, 1103 |
| Lsp1109I | GCAGC | 5 cut(s) | 289, 1018, 1146, 1210, 1459 |
| LweI | GCATC | 8 cut(s) | 250, 337, 455, 580, 807, 816, 990, 1147 |
| MaeI | CTAG | 2 cut(s) | 99, 131 |
| MaeII | ACGT | 2 cut(s) | 495, 698 |
| MaeIII | GTNAC | 3 cut(s) | 578, 1084, 1318 |
| MalI | GATC | 5 cut(s) | 55, 574, 636, 1167, 1246 |
| MbiI | CCGCTC | 1 cut(s) | 104 |
| MboI | GATC | 5 cut(s) | 53, 572, 634, 1165, 1244 |
| MflI | RGATCY | 4 cut(s) | 53, 572, 634, 1244 |
| MhlI | GDGCHC | 3 cut(s) | 169, 521, 1100 |
| MluCI | AATT | 5 cut(s) | 326, 934, 1008, 1218, 1235 |
| MlyI | GAGTC | 4 cut(s) | 188, 303, 575, 850 |
| MmeI | TCCRAC | 1 cut(s) | 550 |
| Mph1103I | ATGCAT | 1 cut(s) | 432 |
| MroXI | GAANNNNTTC | 1 cut(s) | 205 |
| MseI | TTAA | 3 cut(s) | 144, 234, 657 |
| MslI | CAYNNNNRTG | 4 cut(s) | 272, 425, 549, 1407 |
| MspA1I | CMGCKG | 1 cut(s) | 995 |
| MspR9I | CCNGG | 4 cut(s) | 810, 873, 1215, 1290 |
| MvaI | CCWGG | 4 cut(s) | 810, 873, 1215, 1290 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 795, 826, 1478 |
| NcoI | CCATGG | 1 cut(s) | 1268 |
| NdeII | GATC | 5 cut(s) | 53, 572, 634, 1165, 1244 |
| NlaIV | GGNNCC | 9 cut(s) | 85, 556, 636, 945, 946, 1099, 1252, 1294, 1372 |
| NmuCI | GTSAC | 3 cut(s) | 578, 1084, 1318 |
| NsiI | ATGCAT | 1 cut(s) | 432 |
| NspI | RCATGY | 3 cut(s) | 1085, 1381, 1406 |
| PaeI | GCATGC | 1 cut(s) | 1406 |
| PaqCI | CACCTGC | 1 cut(s) | 811 |
| PciI | ACATGT | 1 cut(s) | 1377 |
| PciSI | GCTCTTC | 1 cut(s) | 1407 |
| PdmI | GAANNNNTTC | 1 cut(s) | 205 |
| PfeI | GAWTC | 6 cut(s) | 206, 503, 620, 764, 805, 868 |
| PfoI | TCCNGGA | 2 cut(s) | 808, 871 |
| PkrI | GCNGC | 6 cut(s) | 304, 1033, 1136, 1225, 1436, 1474 |
| PleI | GAGTC | 4 cut(s) | 187, 302, 575, 850 |
| PpsI | GAGTC | 4 cut(s) | 187, 302, 575, 850 |
| PpuMI | RGGWCCY | 1 cut(s) | 944 |
| PscI | ACATGT | 1 cut(s) | 1377 |
| Psp5II | RGGWCCY | 1 cut(s) | 944 |
| Psp6I | CCWGG | 4 cut(s) | 808, 871, 1213, 1288 |
| PspFI | CCCAGC | 2 cut(s) | 785, 991 |
| PspGI | CCWGG | 4 cut(s) | 808, 871, 1213, 1288 |
| PspN4I | GGNNCC | 9 cut(s) | 85, 556, 636, 945, 946, 1099, 1252, 1294, 1372 |
| PspPI | GGNCC | 4 cut(s) | 779, 944, 1286, 1292 |
| PspPPI | RGGWCCY | 1 cut(s) | 944 |
| PstNI | CAGNNNCTG | 2 cut(s) | 350, 506 |
| PsuI | RGATCY | 4 cut(s) | 53, 572, 634, 1244 |
| PvuII | CAGCTG | 1 cut(s) | 995 |
| RseI | CAYNNNNRTG | 4 cut(s) | 272, 425, 549, 1407 |
| SapI | GCTCTTC | 1 cut(s) | 1407 |
| SaqAI | TTAA | 3 cut(s) | 144, 234, 657 |
| SatI | GCNGC | 6 cut(s) | 303, 1032, 1135, 1224, 1435, 1473 |
| Sau3AI | GATC | 5 cut(s) | 53, 572, 634, 1165, 1244 |
| Sau96I | GGNCC | 4 cut(s) | 779, 944, 1286, 1292 |
| SchI | GAGTC | 4 cut(s) | 188, 303, 575, 850 |
| ScrFI | CCNGG | 4 cut(s) | 810, 873, 1215, 1290 |
| SduI | GDGCHC | 3 cut(s) | 169, 521, 1100 |
| SfaNI | GCATC | 8 cut(s) | 250, 337, 455, 580, 807, 816, 990, 1147 |
| SinI | GGWCC | 3 cut(s) | 779, 944, 1286 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 272, 425, 549, 1407 |
| SmlI | CTYRAG | 3 cut(s) | 20, 526, 1107 |
| SmoI | CTYRAG | 3 cut(s) | 20, 526, 1107 |
| SphI | GCATGC | 1 cut(s) | 1406 |
| Sse9I | AATT | 5 cut(s) | 326, 934, 1008, 1218, 1235 |
| SsiI | CCGC | 5 cut(s) | 104, 1178, 1226, 1255, 1434 |
| SspI | AATATT | 2 cut(s) | 661, 921 |
| SspMI | CTAG | 2 cut(s) | 99, 131 |
| StyD4I | CCNGG | 4 cut(s) | 808, 871, 1213, 1288 |
| StyI | CCWWGG | 4 cut(s) | 69, 246, 1145, 1268 |
| TaaI | ACNGT | 4 cut(s) | 849, 1038, 1370, 1453 |
| TaiI | ACGT | 2 cut(s) | 498, 701 |
| TasI | AATT | 5 cut(s) | 326, 934, 1008, 1218, 1235 |
| TauI | GCSGC | 1 cut(s) | 1437 |
| TfiI | GAWTC | 6 cut(s) | 206, 503, 620, 764, 805, 868 |
| Tru1I | TTAA | 3 cut(s) | 144, 234, 657 |
| Tru9I | TTAA | 3 cut(s) | 144, 234, 657 |
| TscAI | CASTG | 3 cut(s) | 216, 427, 1093 |
| TseFI | GTSAC | 3 cut(s) | 578, 1084, 1318 |
| TseI | GCWGC | 5 cut(s) | 302, 1031, 1134, 1223, 1472 |
| Tsp45I | GTSAC | 3 cut(s) | 578, 1084, 1318 |
| TspDTI | ATGAA | 9 cut(s) | 146, 290, 339, 398, 504, 654, 752, 881, 1139 |
| TspRI | CASTG | 3 cut(s) | 216, 427, 1093 |
| VpaK11BI | GGWCC | 3 cut(s) | 779, 944, 1286 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 245 |
| XapI | RAATTY | 1 cut(s) | 1235 |
| XceI | RCATGY | 3 cut(s) | 1085, 1381, 1406 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 548, 806, 1266 |
| XmnI | GAANNNNTTC | 1 cut(s) | 205 |
| XspI | CTAG | 2 cut(s) | 99, 131 |
| Zsp2I | ATGCAT | 1 cut(s) | 432 |