MD15G1193100.v1.1

Ninja-family protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
15217758 .. 15221062
3305 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1193100.v1.1.491

Sequence Viewer

Length: 1506 bp
ATGGAGGATGATAATGGACTTGAACTTAGTTTGGGTCTCTCTTGGGGTGGATCATCTGCCAAAACCAAGGGTAAAAATGGTGCTTCCCCAAATGCTAGAGCAGAAGAAGGTGATAGAGGCAACAAACTAGCGGATGATTTTAAGGACTTTCTTCATGGTGGGGCTCAAAAACAAGAATCTAGTAGCAGCTCTCAGAGAAGTGATTCAGTGAAACCTAAGGAAAACTTCTTCAATGACCTTTCCAAGGCCAGTGTTGATGCAGATGCATCAATGAACTTGAACGGTAGAGGAGTCTGGGTTCCAAACAATAACAAGTCTGATGAAACAGAGGAGGAAAAACGGACTGAGGCTAGTAATAAGCGCAAGAATTTGTTTGACGAGATGAACCATCAAAAGAAGCATGAGAGAGAAACTCATTACTCTGATATGCATGACAAGACGAGAGCATCACACATTTCCGTTACAGAAGATGGCTCAACTGCTGAAAATGAAGACGTGGCAGATTCTGAAGTGGAGGGTTCATCCTCAGTGCCGATTTCTCAACATGCTGAGGGCGTCAAGCGATTTGTTGGATCCGGTGACTCTTCTGATGCTCAGAAGGAAGTTCGAAGGTTTGCTGATTCCAATGTTGTCGACCTAAATGGGCAGAAGAGGTTTAATATCTCATCAGAAAATGAATATAAGCTTGGGAATATGGCGTATGGCAGTCCCTTCTCACTGCAATCAGTAAACATGAACATACCTTATTCTCTCCCGACGAAGGAATCTAATTCAGTTGGTGCGACCACCACATCAGGACATCCAATGCATGGGATGATGCAGGCGATGCCTACTGTTACTGGTGAGCGAACAGGGACTCAACCTGTGAATCCTGGAAACTTGCCAGTTATGTTTGGCTATTCACCTGTCCAGCTCCCAATGTTGGATAAAGATAATTCCTGGGGTGCGATTCCTCATGCTCAACAATTCCATCCTGCCTATGCTGGCAGAAATCCACCAAACTCAGCTATGATGCAAGTCGTTTCACATAATTCACCTGATGTTGCACAATATGATGGGAGGATGTTAGAACGGGCGAGAGGTGATGGCAAACAGAATGTCACTGAAGAGGGCGCATCTTCTCAGGTAGAAGAAGACACAAAAGTAAGTAGCGCAAACCTCGGGATGAAAGATGCACCTGGCCGCCCAACGGCAGAGGACTTATCTCTTGATTTTTCAGCTATAAAGCCAGGTATTGCTGCAGACATAAAATTTGGGGGATCTGGTTCATGCCCGAACCTACCATGGGTTTCTACCAAGGGCCAAGGCCCAAATGGTAAGACAATTTCTGGTGTAACTTACCGATACAGCACAAACCAAATCAAGATAGTTTGTGCTTGCCACGGCTTGCACATGTCCCCTGAAGAGTTTGTTCGTCATGCAAGCGACGAGCCATCTAATCCCGAAAGTGGCACTGGTTTGGCAGCATTTCCTAATGGCAATCCTTCTGCCTCGGCTCATACCTAA

Protein Analysis

502

Amino Acids

53.83

Weight (kDa)

5.43

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010854)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 809
AccI GTMKAC 1 cut(s) 633
AciI CCGC 2 cut(s) 131, 1183
AclWI GGATC 4 cut(s) 58, 567, 580, 1267
AcoI YGGCCR 1 cut(s) 1180
AcsI RAATTY 2 cut(s) 367, 1250
AcuI CTGAAG 3 cut(s) 528, 1125, 1422
AcyI GRCGYC 1 cut(s) 555
AfiI CCNNNNNNNGG 7 cut(s) 244, 760, 809, 922, 1189, 1285, 1448
AflIII ACRYGT 1 cut(s) 1392
AgsI TTSAA 3 cut(s) 23, 232, 280
AjiI CACGTC 1 cut(s) 496
AjnI CCWGG 4 cut(s) 871, 938, 1177, 1228
AjuI GAANNNNNNNTTGG 2 cut(s) 669, 701
AloI GAACNNNNNNTCC 2 cut(s) 282, 314
AluBI AGCT 5 cut(s) 189, 685, 913, 1007, 1220
AluI AGCT 5 cut(s) 189, 685, 913, 1007, 1220
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 4 cut(s) 58, 567, 580, 1267
AlwNI CAGNNNCTG 1 cut(s) 506
Ama87I CYCGRG 1 cut(s) 1160
AoxI GGCC 4 cut(s) 246, 1180, 1300, 1306
ApeKI GCWGC 3 cut(s) 186, 1238, 1463
ApoI RAATTY 2 cut(s) 367, 1250
ArsI GACNNNNNNTTYG 4 cut(s) 1083, 1115, 1235, 1267
Asp700I GAANNNNTTC 1 cut(s) 202
AspLEI GCGC 3 cut(s) 363, 1115, 1154
AspS9I GGNCC 2 cut(s) 1300, 1307
AsuHPI GGTGA 6 cut(s) 122, 590, 854, 894, 1026, 1094
AsuII TTCGAA 1 cut(s) 607
AvaI CYCGRG 1 cut(s) 1160
AxyI CCTNAGG 1 cut(s) 216
BamHI GGATCC 1 cut(s) 572
BanII GRGCYC 1 cut(s) 166
BbsI GAAGAC 2 cut(s) 498, 1140
BbvCI CCTCAGC 1 cut(s) 549
BbvI GCAGC 3 cut(s) 198, 1225, 1475
BccI CCATC 6 cut(s) 396, 464, 978, 1049, 1079, 1441
BceAI ACGGC 2 cut(s) 1206, 1399
BciT130I CCWGG 4 cut(s) 873, 940, 1179, 1230
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 4 cut(s) 96, 128, 180, 351
BfmI CTRYAG 1 cut(s) 1239
BisI GCNGC 4 cut(s) 187, 1183, 1239, 1464
BlsI GCNGC 4 cut(s) 188, 1184, 1240, 1465
Bme1390I CCNGG 4 cut(s) 873, 940, 1179, 1230
BmeT110I CYCGRG 1 cut(s) 1160
BmgBI CACGTC 1 cut(s) 496
BmgT120I GGNCC 2 cut(s) 1300, 1307
BmiI GGNNCC 2 cut(s) 300, 574
BmrFI CCNGG 4 cut(s) 873, 940, 1179, 1230
BpiI GAAGAC 2 cut(s) 498, 1140
BplI GAGNNNNNCTC 2 cut(s) 397, 429
Bpu10I CCTNAGC 1 cut(s) 549
Bpu14I TTCGAA 1 cut(s) 607
BsaHI GRCGYC 1 cut(s) 555
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 9 cut(s) 66, 243, 939, 1159, 1283, 1296, 1303, 1381, 1491
BsaWI WCCGGW 1 cut(s) 575
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 7 cut(s) 244, 760, 809, 922, 1189, 1285, 1448
Bse1I ACTGG 4 cut(s) 249, 844, 884, 1459
Bse21I CCTNAGG 1 cut(s) 216
BseBI CCWGG 4 cut(s) 873, 940, 1179, 1230
BseDI CCNNGG 9 cut(s) 66, 243, 939, 1159, 1283, 1296, 1303, 1381, 1491
BseGI GGATG 8 cut(s) 13, 139, 521, 799, 819, 970, 1068, 1170
BseLI CCNNNNNNNGG 7 cut(s) 244, 760, 809, 922, 1189, 1285, 1448
BseMII CTCAG 7 cut(s) 206, 336, 540, 540, 608, 1017, 1136
BseNI ACTGG 4 cut(s) 249, 844, 884, 1459
BseRI GAGGAG 2 cut(s) 303, 344
BseXI GCAGC 3 cut(s) 198, 1225, 1475
BshFI GGCC 4 cut(s) 248, 1182, 1302, 1308
BsiHKCI CYCGRG 1 cut(s) 1160
BsiSI CCGG 1 cut(s) 576
BslFI GGGAC 3 cut(s) 693, 868, 1381
BslI CCNNNNNNNGG 7 cut(s) 244, 760, 809, 922, 1189, 1285, 1448
BsmAI GTCTC 1 cut(s) 41
BsmFI GGGAC 3 cut(s) 693, 868, 1381
BsnI GGCC 4 cut(s) 248, 1182, 1302, 1308
Bso31I GGTCTC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 1160
Bsp119I TTCGAA 1 cut(s) 607
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 3 cut(s) 50, 572, 1259
Bsp19I CCATGG 1 cut(s) 1283
BspACI CCGC 2 cut(s) 131, 1183
BspANI GGCC 4 cut(s) 248, 1182, 1302, 1308
BspCNI CTCAG 7 cut(s) 205, 337, 539, 541, 607, 1016, 1135
BspLI GGNNCC 2 cut(s) 300, 574
BspMAI CTGCAG 1 cut(s) 1243
BspPI GGATC 4 cut(s) 58, 567, 580, 1267
BspT104I TTCGAA 1 cut(s) 607
BspTNI GGTCTC 1 cut(s) 41
BsrI ACTGG 4 cut(s) 249, 844, 884, 1459
BssECI CCNNGG 9 cut(s) 66, 243, 939, 1159, 1283, 1296, 1303, 1381, 1491
BssMI GATC 3 cut(s) 50, 572, 1259
BssNI GRCGYC 1 cut(s) 555
BssT1I CCWWGG 5 cut(s) 66, 243, 1283, 1296, 1303
Bst2UI CCWGG 4 cut(s) 873, 940, 1179, 1230
Bst4CI ACNGT 2 cut(s) 284, 835
Bst6I CTCTTC 4 cut(s) 589, 644, 1101, 1398
BstACI GRCGYC 1 cut(s) 555
BstAPI GCANNNNNTGC 1 cut(s) 826
BstBI TTCGAA 1 cut(s) 607
BstC8I GCNNGC 5 cut(s) 822, 985, 1378, 1388, 1423
BstDEI CTNAG 9 cut(s) 26, 192, 216, 345, 526, 549, 594, 1003, 1122
BstDSI CCRYGG 2 cut(s) 1283, 1381
BstENI CCTNNNNNAGG 1 cut(s) 242
BstF5I GGATG 8 cut(s) 13, 139, 521, 799, 819, 970, 1068, 1170
BstHHI GCGC 3 cut(s) 363, 1115, 1154
BstKTI GATC 3 cut(s) 53, 575, 1262
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 3 cut(s) 50, 572, 1259
BstMWI GCNNNNNNNGC 1 cut(s) 826
BstNI CCWGG 4 cut(s) 873, 940, 1179, 1230
BstNSI RCATGY 2 cut(s) 548, 1396
BstSCI CCNGG 4 cut(s) 871, 938, 1177, 1228
BstSFI CTRYAG 1 cut(s) 1239
BstV1I GCAGC 3 cut(s) 198, 1225, 1475
BstV2I GAAGAC 2 cut(s) 498, 1140
BstX2I RGATCY 2 cut(s) 572, 1259
BstYI RGATCY 2 cut(s) 572, 1259
Bsu36I CCTNAGG 1 cut(s) 216
BsuRI GGCC 4 cut(s) 248, 1182, 1302, 1308
BtgI CCRYGG 2 cut(s) 1283, 1381
BtgZI GCGATG 1 cut(s) 839
BtrI CACGTC 1 cut(s) 496
BtsCI GGATG 8 cut(s) 13, 139, 521, 799, 819, 970, 1068, 1170
BtsI GCAGTG 1 cut(s) 716
BtsIMutI CAGTG 6 cut(s) 213, 256, 534, 716, 1101, 1452
Cac8I GCNNGC 5 cut(s) 822, 985, 1378, 1388, 1423
CaiI CAGNNNCTG 1 cut(s) 506
CfoI GCGC 3 cut(s) 363, 1115, 1154
Cfr13I GGNCC 2 cut(s) 1300, 1307
CseI GACGC 1 cut(s) 544
DdeI CTNAG 9 cut(s) 26, 192, 216, 345, 526, 549, 594, 1003, 1122
DpnI GATC 3 cut(s) 52, 574, 1261
DpnII GATC 3 cut(s) 50, 572, 1259
EaeI YGGCCR 1 cut(s) 1180
Eam1104I CTCTTC 4 cut(s) 589, 644, 1101, 1398
EarI CTCTTC 4 cut(s) 589, 644, 1101, 1398
Eco130I CCWWGG 5 cut(s) 66, 243, 1283, 1296, 1303
Eco24I GRGCYC 1 cut(s) 166
Eco31I GGTCTC 1 cut(s) 41
Eco57I CTGAAG 3 cut(s) 528, 1125, 1422
Eco81I CCTNAGG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 1160
EcoNI CCTNNNNNAGG 1 cut(s) 242
EcoRII CCWGG 4 cut(s) 871, 938, 1177, 1228
EcoT14I CCWWGG 5 cut(s) 66, 243, 1283, 1296, 1303
EcoT22I ATGCAT 3 cut(s) 268, 432, 810
EcoT38I GRGCYC 1 cut(s) 166
ErhI CCWWGG 5 cut(s) 66, 243, 1283, 1296, 1303
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FaqI GGGAC 3 cut(s) 693, 868, 1381
FblI GTMKAC 1 cut(s) 633
Fnu4HI GCNGC 4 cut(s) 187, 1183, 1239, 1464
FokI GGATG 8 cut(s) 20, 146, 508, 786, 826, 957, 1075, 1177
FriOI GRGCYC 1 cut(s) 166
Fsp4HI GCNGC 4 cut(s) 187, 1183, 1239, 1464
FspBI CTAG 4 cut(s) 96, 128, 180, 351
GlaI GCGC 3 cut(s) 362, 1114, 1153
GluI GCNGC 4 cut(s) 187, 1183, 1239, 1464
HaeIII GGCC 4 cut(s) 248, 1182, 1302, 1308
HapII CCGG 1 cut(s) 576
HgaI GACGC 1 cut(s) 544
HhaI GCGC 3 cut(s) 363, 1115, 1154
Hin1I GRCGYC 1 cut(s) 555
Hin6I GCGC 3 cut(s) 361, 1113, 1152
HinP1I GCGC 3 cut(s) 361, 1113, 1152
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HindIII AAGCTT 1 cut(s) 683
HpaII CCGG 1 cut(s) 576
HphI GGTGA 6 cut(s) 122, 590, 854, 894, 1026, 1094
Hpy166II GTNNAC 2 cut(s) 634, 730
Hpy188I TCNGA 7 cut(s) 195, 319, 424, 508, 589, 597, 670
Hpy188III TCNNGA 6 cut(s) 754, 795, 1162, 1208, 1363, 1442
Hpy8I GTNNAC 2 cut(s) 634, 730
Hpy99I CGWCG 2 cut(s) 760, 1430
HpyAV CCTTC 6 cut(s) 101, 592, 603, 721, 754, 1494
HpyCH4III ACNGT 2 cut(s) 284, 835
HpyCH4IV ACGT 1 cut(s) 495
HpyF10VI GCNNNNNNNGC 1 cut(s) 826
HpyF3I CTNAG 9 cut(s) 26, 192, 216, 345, 526, 549, 594, 1003, 1122
HpySE526I ACGT 1 cut(s) 495
Hsp92I GRCGYC 1 cut(s) 555
HspAI GCGC 3 cut(s) 361, 1113, 1152
Kzo9I GATC 3 cut(s) 50, 572, 1259
LmnI GCTCC 1 cut(s) 918
Lsp1109I GCAGC 3 cut(s) 198, 1225, 1475
MaeI CTAG 4 cut(s) 96, 128, 180, 351
MaeII ACGT 1 cut(s) 495
MaeIII GTNAC 5 cut(s) 460, 578, 835, 1099, 1333
MalI GATC 3 cut(s) 52, 574, 1261
MboI GATC 3 cut(s) 50, 572, 1259
MflI RGATCY 2 cut(s) 572, 1259
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 7 cut(s) 367, 769, 934, 965, 1030, 1250, 1323
MlyI GAGTC 3 cut(s) 300, 575, 850
MmeI TCCRAC 2 cut(s) 550, 903
Mph1103I ATGCAT 3 cut(s) 268, 432, 810
MroXI GAANNNNTTC 1 cut(s) 202
MseI TTAA 2 cut(s) 141, 657
MspI CCGG 1 cut(s) 576
MspR9I CCNGG 4 cut(s) 873, 940, 1179, 1230
MvaI CCWGG 4 cut(s) 873, 940, 1179, 1230
MwoI GCNNNNNNNGC 1 cut(s) 826
NcoI CCATGG 1 cut(s) 1283
NdeII GATC 3 cut(s) 50, 572, 1259
NlaIV GGNNCC 2 cut(s) 300, 574
NmeAIII GCCGAG 1 cut(s) 1472
NmuCI GTSAC 2 cut(s) 578, 1099
NsiI ATGCAT 3 cut(s) 268, 432, 810
NspI RCATGY 2 cut(s) 548, 1396
NspV TTCGAA 1 cut(s) 607
PciI ACATGT 1 cut(s) 1392
PdmI GAANNNNTTC 1 cut(s) 202
PfeI GAWTC 7 cut(s) 176, 203, 503, 620, 764, 868, 949
PflMI CCANNNNNTGG 1 cut(s) 809
PfoI TCCNGGA 1 cut(s) 871
PkrI GCNGC 4 cut(s) 188, 1184, 1240, 1465
PleI GAGTC 3 cut(s) 299, 575, 850
PpsI GAGTC 3 cut(s) 299, 575, 850
PscI ACATGT 1 cut(s) 1392
Psp6I CCWGG 4 cut(s) 871, 938, 1177, 1228
PspGI CCWGG 4 cut(s) 871, 938, 1177, 1228
PspN4I GGNNCC 2 cut(s) 300, 574
PspPI GGNCC 2 cut(s) 1300, 1307
PstI CTGCAG 1 cut(s) 1243
PstNI CAGNNNCTG 1 cut(s) 506
PsuI RGATCY 2 cut(s) 572, 1259
SalI GTCGAC 1 cut(s) 632
SaqAI TTAA 2 cut(s) 141, 657
SatI GCNGC 4 cut(s) 187, 1183, 1239, 1464
Sau3AI GATC 3 cut(s) 50, 572, 1259
Sau96I GGNCC 2 cut(s) 1300, 1307
SchI GAGTC 3 cut(s) 300, 575, 850
ScrFI CCNGG 4 cut(s) 873, 940, 1179, 1230
SduI GDGCHC 1 cut(s) 166
SfcI CTRYAG 1 cut(s) 1239
SfuI TTCGAA 1 cut(s) 607
Sse9I AATT 7 cut(s) 367, 769, 934, 965, 1030, 1250, 1323
SsiI CCGC 2 cut(s) 131, 1183
SspMI CTAG 4 cut(s) 96, 128, 180, 351
StyD4I CCNGG 4 cut(s) 871, 938, 1177, 1228
StyI CCWWGG 5 cut(s) 66, 243, 1283, 1296, 1303
TaaI ACNGT 2 cut(s) 284, 835
TaiI ACGT 1 cut(s) 498
TaqI TCGA 2 cut(s) 607, 633
TasI AATT 7 cut(s) 367, 769, 934, 965, 1030, 1250, 1323
TauI GCSGC 1 cut(s) 1185
TfiI GAWTC 7 cut(s) 176, 203, 503, 620, 764, 868, 949
Tru1I TTAA 2 cut(s) 141, 657
Tru9I TTAA 2 cut(s) 141, 657
TscAI CASTG 6 cut(s) 213, 256, 534, 723, 1108, 1459
TseFI GTSAC 2 cut(s) 578, 1099
TseI GCWGC 3 cut(s) 186, 1238, 1463
Tsp45I GTSAC 2 cut(s) 578, 1099
TspGWI ACGGA 2 cut(s) 355, 448
TspRI CASTG 6 cut(s) 213, 256, 534, 723, 1108, 1459
Van91I CCANNNNNTGG 1 cut(s) 809
XagI CCTNNNNNAGG 1 cut(s) 242
XapI RAATTY 2 cut(s) 367, 1250
XceI RCATGY 2 cut(s) 548, 1396
XcmI CCANNNNNNNNNTGG 1 cut(s) 1310
XmiI GTMKAC 1 cut(s) 633
XmnI GAANNNNTTC 1 cut(s) 202
XspI CTAG 4 cut(s) 96, 128, 180, 351
Zsp2I ATGCAT 3 cut(s) 268, 432, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.