Ninja-family protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G28910 AT4G28910 AT4G28910 |
| fragaria_vesca | FvH4_1g05760 FvH4_1g05760 FvH4_1g05760 |
| malus_domestica | MD02G1058800.v1.1 MD15G1193100.v1.1 |
| prunus_persica | Prupe.7G224200_v2.0.a1 |
| pyrus_communis | pycom02g04760 pycom15g17290 |
| rosa_chinensis | RchiOBHm_Chr2g0091401 |
| rosa_laevigata | RLG00000016221 |
| rosa_roxburghii | Rroxscaffold_2G00150110 |
| rosa_rugosa | Rorug02G0017500 |
| rosa_samantha | Rh2AG062500 Rh2BG061500 Rh2CG063600 Rh2DG062100 |
| rosa_wichuraiana | Rw2G005770 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 864 |
| Acc65I | GGTACC | 1 cut(s) | 1441 |
| AccB1I | GGYRCC | 2 cut(s) | 818, 1441 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1076 |
| AccII | CGCG | 1 cut(s) | 1421 |
| AciI | CCGC | 4 cut(s) | 61, 1450, 1716, 1752 |
| AclWI | GGATC | 6 cut(s) | 210, 322, 405, 844, 1534, 1700 |
| AcsI | RAATTY | 4 cut(s) | 44, 631, 799, 1517 |
| AcuI | CTGAAG | 3 cut(s) | 792, 1392, 1689 |
| AfaI | GTAC | 2 cut(s) | 40, 1443 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 508, 1027, 1076, 1456, 1715 |
| AflIII | ACRYGT | 2 cut(s) | 808, 1659 |
| AgsI | TTSAA | 4 cut(s) | 10, 287, 496, 544 |
| AhlI | ACTAGT | 1 cut(s) | 391 |
| AjiI | CACGTC | 1 cut(s) | 760 |
| AjnI | CCWGG | 2 cut(s) | 1205, 1495 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 35, 67, 121, 153, 933, 965 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 133, 165 |
| AluBI | AGCT | 7 cut(s) | 91, 453, 677, 949, 1180, 1274, 1763 |
| AluI | AGCT | 7 cut(s) | 91, 453, 677, 949, 1180, 1274, 1763 |
| Alw26I | GTCTC | 1 cut(s) | 305 |
| AlwI | GGATC | 6 cut(s) | 210, 322, 405, 844, 1534, 1700 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 770 |
| AoxI | GGCC | 2 cut(s) | 510, 1573 |
| ApeKI | GCWGC | 5 cut(s) | 88, 614, 1416, 1505, 1754 |
| ApoI | RAATTY | 4 cut(s) | 44, 631, 799, 1517 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1350, 1382, 1502, 1534 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 14, 466 |
| Asp718I | GGTACC | 1 cut(s) | 1441 |
| AspLEI | GCGC | 2 cut(s) | 1421, 1619 |
| AspS9I | GGNCC | 2 cut(s) | 898, 1574 |
| AsuHPI | GGTGA | 5 cut(s) | 386, 854, 1121, 1161, 1361 |
| AsuII | TTCGAA | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 898 |
| AxyI | CCTNAGG | 1 cut(s) | 1427 |
| BanI | GGYRCC | 2 cut(s) | 818, 1441 |
| BanII | GRGCYC | 1 cut(s) | 430 |
| BbsI | GAAGAC | 2 cut(s) | 762, 1407 |
| BbvCI | CCTCAGC | 1 cut(s) | 1759 |
| BbvI | GCAGC | 5 cut(s) | 100, 601, 1428, 1492, 1741 |
| BccI | CCATC | 4 cut(s) | 660, 728, 1245, 1316 |
| BceAI | ACGGC | 1 cut(s) | 1473 |
| BciT130I | CCWGG | 2 cut(s) | 1207, 1497 |
| BcoDI | GTCTC | 1 cut(s) | 305 |
| BcuI | ACTAGT | 1 cut(s) | 391 |
| BfaI | CTAG | 3 cut(s) | 360, 392, 444 |
| BfmI | CTRYAG | 1 cut(s) | 1506 |
| BfuAI | ACCTGC | 1 cut(s) | 864 |
| BisI | GCNGC | 6 cut(s) | 89, 615, 1417, 1506, 1717, 1755 |
| BlsI | GCNGC | 6 cut(s) | 90, 616, 1418, 1507, 1718, 1756 |
| Bme1390I | CCNGG | 2 cut(s) | 1207, 1497 |
| Bme18I | GGWCC | 1 cut(s) | 898 |
| BmgBI | CACGTC | 1 cut(s) | 760 |
| BmgT120I | GGNCC | 2 cut(s) | 898, 1574 |
| BmiI | GGNNCC | 4 cut(s) | 820, 1443, 1534, 1576 |
| BmrFI | CCNGG | 2 cut(s) | 1207, 1497 |
| BmsI | GCATC | 9 cut(s) | 511, 517, 539, 719, 844, 1074, 1083, 1269, 1391 |
| BpiI | GAAGAC | 2 cut(s) | 762, 1407 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 661, 693 |
| BpmI | CTGGAG | 1 cut(s) | 932 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1759 |
| Bpu14I | TTCGAA | 1 cut(s) | 119 |
| BsaI | GGTCTC | 1 cut(s) | 305 |
| BsaJI | CCNNGG | 6 cut(s) | 330, 507, 888, 1206, 1550, 1648 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 508, 1027, 1076, 1456, 1715 |
| Bse1I | ACTGG | 5 cut(s) | 513, 915, 1111, 1151, 1726 |
| Bse21I | CCTNAGG | 1 cut(s) | 1427 |
| BseBI | CCWGG | 2 cut(s) | 1207, 1497 |
| BseDI | CCNNGG | 6 cut(s) | 330, 507, 888, 1206, 1550, 1648 |
| BseGI | GGATG | 6 cut(s) | 277, 785, 1066, 1237, 1335, 1437 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 508, 1027, 1076, 1456, 1715 |
| BseMII | CTCAG | 9 cut(s) | 257, 600, 804, 872, 993, 1284, 1403, 1441, 1773 |
| BseNI | ACTGG | 5 cut(s) | 513, 915, 1111, 1151, 1726 |
| BseRI | GAGGAG | 3 cut(s) | 567, 608, 611 |
| BseXI | GCAGC | 5 cut(s) | 100, 601, 1428, 1492, 1741 |
| BsgI | GTGCAG | 1 cut(s) | 64 |
| Bsh1236I | CGCG | 1 cut(s) | 1421 |
| BshFI | GGCC | 2 cut(s) | 512, 1575 |
| BshNI | GGYRCC | 2 cut(s) | 818, 1441 |
| BslFI | GGGAC | 2 cut(s) | 1135, 1648 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 508, 1027, 1076, 1456, 1715 |
| BsmAI | GTCTC | 1 cut(s) | 305 |
| BsmFI | GGGAC | 2 cut(s) | 1135, 1648 |
| BsnI | GGCC | 2 cut(s) | 512, 1575 |
| Bso31I | GGTCTC | 1 cut(s) | 305 |
| Bsp119I | TTCGAA | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 1 cut(s) | 430 |
| Bsp143I | GATC | 6 cut(s) | 202, 314, 397, 836, 1526, 1705 |
| Bsp19I | CCATGG | 2 cut(s) | 1550, 1648 |
| BspACI | CCGC | 4 cut(s) | 61, 1450, 1716, 1752 |
| BspANI | GGCC | 2 cut(s) | 512, 1575 |
| BspCNI | CTCAG | 9 cut(s) | 256, 601, 803, 871, 992, 1283, 1402, 1440, 1772 |
| BspFNI | CGCG | 1 cut(s) | 1421 |
| BspLI | GGNNCC | 4 cut(s) | 820, 1443, 1534, 1576 |
| BspMAI | CTGCAG | 1 cut(s) | 1510 |
| BspMI | ACCTGC | 1 cut(s) | 864 |
| BspPI | GGATC | 6 cut(s) | 210, 322, 405, 844, 1534, 1700 |
| BspQI | GCTCTTC | 1 cut(s) | 1689 |
| BspT104I | TTCGAA | 1 cut(s) | 119 |
| BspT107I | GGYRCC | 2 cut(s) | 818, 1441 |
| BspTNI | GGTCTC | 1 cut(s) | 305 |
| BsrI | ACTGG | 5 cut(s) | 513, 915, 1111, 1151, 1726 |
| BssECI | CCNNGG | 6 cut(s) | 330, 507, 888, 1206, 1550, 1648 |
| BssMI | GATC | 6 cut(s) | 202, 314, 397, 836, 1526, 1705 |
| BssT1I | CCWWGG | 5 cut(s) | 330, 507, 888, 1550, 1648 |
| Bst2UI | CCWGG | 2 cut(s) | 1207, 1497 |
| Bst4CI | ACNGT | 2 cut(s) | 236, 1102 |
| Bst6I | CTCTTC | 6 cut(s) | 78, 121, 853, 1368, 1665, 1689 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1093 |
| BstBI | TTCGAA | 1 cut(s) | 119 |
| BstC8I | GCNNGC | 5 cut(s) | 1089, 1252, 1645, 1655, 1690 |
| BstDSI | CCRYGG | 2 cut(s) | 1550, 1648 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 506 |
| BstF5I | GGATG | 6 cut(s) | 277, 785, 1066, 1237, 1335, 1437 |
| BstFNI | CGCG | 1 cut(s) | 1421 |
| BstHHI | GCGC | 2 cut(s) | 1421, 1619 |
| BstKTI | GATC | 6 cut(s) | 205, 317, 400, 839, 1529, 1708 |
| BstMAI | GTCTC | 1 cut(s) | 305 |
| BstMBI | GATC | 6 cut(s) | 202, 314, 397, 836, 1526, 1705 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1093, 1211, 1760 |
| BstNI | CCWGG | 2 cut(s) | 1207, 1497 |
| BstNSI | RCATGY | 4 cut(s) | 812, 1009, 1286, 1663 |
| BstSCI | CCNGG | 2 cut(s) | 1205, 1495 |
| BstSFI | CTRYAG | 1 cut(s) | 1506 |
| BstUI | CGCG | 1 cut(s) | 1421 |
| BstV1I | GCAGC | 5 cut(s) | 100, 601, 1428, 1492, 1741 |
| BstV2I | GAAGAC | 2 cut(s) | 762, 1407 |
| BstX2I | RGATCY | 2 cut(s) | 836, 1526 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 895 |
| BstYI | RGATCY | 2 cut(s) | 836, 1526 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1427 |
| BsuRI | GGCC | 2 cut(s) | 512, 1575 |
| BtgI | CCRYGG | 2 cut(s) | 1550, 1648 |
| BtgZI | GCGATG | 1 cut(s) | 1106 |
| BtrI | CACGTC | 1 cut(s) | 760 |
| BtsCI | GGATG | 6 cut(s) | 277, 785, 1066, 1237, 1335, 1437 |
| BtsIMutI | CAGTG | 7 cut(s) | 173, 477, 520, 798, 987, 1368, 1719 |
| BveI | ACCTGC | 1 cut(s) | 864 |
| Cac8I | GCNNGC | 5 cut(s) | 1089, 1252, 1645, 1655, 1690 |
| CaiI | CAGNNNCTG | 1 cut(s) | 770 |
| CfoI | GCGC | 2 cut(s) | 1421, 1619 |
| Cfr13I | GGNCC | 2 cut(s) | 898, 1574 |
| CseI | GACGC | 1 cut(s) | 1388 |
| Csp6I | GTAC | 2 cut(s) | 39, 1442 |
| CviQI | GTAC | 2 cut(s) | 39, 1442 |
| DpnI | GATC | 6 cut(s) | 204, 316, 399, 838, 1528, 1707 |
| DpnII | GATC | 6 cut(s) | 202, 314, 397, 836, 1526, 1705 |
| Eam1104I | CTCTTC | 6 cut(s) | 78, 121, 853, 1368, 1665, 1689 |
| EarI | CTCTTC | 6 cut(s) | 78, 121, 853, 1368, 1665, 1689 |
| EciI | GGCGGA | 1 cut(s) | 50 |
| Eco130I | CCWWGG | 5 cut(s) | 330, 507, 888, 1550, 1648 |
| Eco24I | GRGCYC | 1 cut(s) | 430 |
| Eco31I | GGTCTC | 1 cut(s) | 305 |
| Eco32I | GATATC | 1 cut(s) | 182 |
| Eco47I | GGWCC | 1 cut(s) | 898 |
| Eco57I | CTGAAG | 3 cut(s) | 792, 1392, 1689 |
| Eco81I | CCTNAGG | 1 cut(s) | 1427 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 506 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1574 |
| EcoRII | CCWGG | 2 cut(s) | 1205, 1495 |
| EcoRV | GATATC | 1 cut(s) | 182 |
| EcoT14I | CCWWGG | 5 cut(s) | 330, 507, 888, 1550, 1648 |
| EcoT22I | ATGCAT | 4 cut(s) | 532, 696, 1077, 1284 |
| EcoT38I | GRGCYC | 1 cut(s) | 430 |
| ErhI | CCWWGG | 5 cut(s) | 330, 507, 888, 1550, 1648 |
| FaqI | GGGAC | 2 cut(s) | 1135, 1648 |
| FauI | CCCGC | 1 cut(s) | 1759 |
| Fnu4HI | GCNGC | 6 cut(s) | 89, 615, 1417, 1506, 1717, 1755 |
| FokI | GGATG | 6 cut(s) | 284, 772, 1053, 1224, 1342, 1444 |
| FriOI | GRGCYC | 1 cut(s) | 430 |
| Fsp4HI | GCNGC | 6 cut(s) | 89, 615, 1417, 1506, 1717, 1755 |
| FspBI | CTAG | 3 cut(s) | 360, 392, 444 |
| GlaI | GCGC | 2 cut(s) | 1420, 1618 |
| GluI | GCNGC | 6 cut(s) | 89, 615, 1417, 1506, 1717, 1755 |
| GsuI | CTGGAG | 1 cut(s) | 932 |
| HaeIII | GGCC | 2 cut(s) | 512, 1575 |
| HgaI | GACGC | 1 cut(s) | 1388 |
| HhaI | GCGC | 2 cut(s) | 1421, 1619 |
| Hin6I | GCGC | 2 cut(s) | 1419, 1617 |
| HinP1I | GCGC | 2 cut(s) | 1419, 1617 |
| HindIII | AAGCTT | 1 cut(s) | 947 |
| HphI | GGTGA | 5 cut(s) | 386, 854, 1121, 1161, 1361 |
| Hpy166II | GTNNAC | 1 cut(s) | 898 |
| Hpy188III | TCNNGA | 5 cut(s) | 1021, 1062, 1429, 1475, 1709 |
| Hpy8I | GTNNAC | 1 cut(s) | 898 |
| HpyAV | CCTTC | 3 cut(s) | 365, 856, 1710 |
| HpyCH4III | ACNGT | 2 cut(s) | 236, 1102 |
| HpyCH4IV | ACGT | 1 cut(s) | 759 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1093, 1211, 1760 |
| HpySE526I | ACGT | 1 cut(s) | 759 |
| HspAI | GCGC | 2 cut(s) | 1419, 1617 |
| KpnI | GGTACC | 1 cut(s) | 1445 |
| Kzo9I | GATC | 6 cut(s) | 202, 314, 397, 836, 1526, 1705 |
| LguI | GCTCTTC | 1 cut(s) | 1689 |
| LmnI | GCTCC | 1 cut(s) | 1185 |
| Lsp1109I | GCAGC | 5 cut(s) | 100, 601, 1428, 1492, 1741 |
| LweI | GCATC | 9 cut(s) | 511, 517, 539, 719, 844, 1074, 1083, 1269, 1391 |
| MaeI | CTAG | 3 cut(s) | 360, 392, 444 |
| MaeII | ACGT | 1 cut(s) | 759 |
| MaeIII | GTNAC | 5 cut(s) | 724, 842, 1102, 1366, 1600 |
| MalI | GATC | 6 cut(s) | 204, 316, 399, 838, 1528, 1707 |
| MboI | GATC | 6 cut(s) | 202, 314, 397, 836, 1526, 1705 |
| MflI | RGATCY | 2 cut(s) | 836, 1526 |
| MhlI | GDGCHC | 1 cut(s) | 430 |
| MluCI | AATT | 8 cut(s) | 44, 631, 799, 1036, 1232, 1297, 1517, 1590 |
| MlyI | GAGTC | 4 cut(s) | 564, 839, 979, 1117 |
| MmeI | TCCRAC | 1 cut(s) | 814 |
| Mph1103I | ATGCAT | 4 cut(s) | 532, 696, 1077, 1284 |
| MroXI | GAANNNNTTC | 2 cut(s) | 14, 466 |
| MseI | TTAA | 2 cut(s) | 405, 921 |
| MspA1I | CMGCKG | 1 cut(s) | 1754 |
| MspR9I | CCNGG | 2 cut(s) | 1207, 1497 |
| MvaI | CCWGG | 2 cut(s) | 1207, 1497 |
| MvnI | CGCG | 1 cut(s) | 1421 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1093, 1211, 1760 |
| NcoI | CCATGG | 2 cut(s) | 1550, 1648 |
| NdeII | GATC | 6 cut(s) | 202, 314, 397, 836, 1526, 1705 |
| NlaIV | GGNNCC | 4 cut(s) | 820, 1443, 1534, 1576 |
| NmuCI | GTSAC | 2 cut(s) | 842, 1366 |
| NsiI | ATGCAT | 4 cut(s) | 532, 696, 1077, 1284 |
| NspI | RCATGY | 4 cut(s) | 812, 1009, 1286, 1663 |
| NspV | TTCGAA | 1 cut(s) | 119 |
| PciI | ACATGT | 2 cut(s) | 808, 1659 |
| PciSI | GCTCTTC | 1 cut(s) | 1689 |
| PdmI | GAANNNNTTC | 2 cut(s) | 14, 466 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1076 |
| PkrI | GCNGC | 6 cut(s) | 90, 616, 1418, 1507, 1718, 1756 |
| PleI | GAGTC | 4 cut(s) | 563, 839, 978, 1117 |
| PpsI | GAGTC | 4 cut(s) | 563, 839, 978, 1117 |
| PscI | ACATGT | 2 cut(s) | 808, 1659 |
| Psp6I | CCWGG | 2 cut(s) | 1205, 1495 |
| PspGI | CCWGG | 2 cut(s) | 1205, 1495 |
| PspN4I | GGNNCC | 4 cut(s) | 820, 1443, 1534, 1576 |
| PspPI | GGNCC | 2 cut(s) | 898, 1574 |
| PstI | CTGCAG | 1 cut(s) | 1510 |
| PstNI | CAGNNNCTG | 1 cut(s) | 770 |
| PsuI | RGATCY | 2 cut(s) | 836, 1526 |
| RsaI | GTAC | 2 cut(s) | 40, 1443 |
| RsaNI | GTAC | 2 cut(s) | 39, 1442 |
| SapI | GCTCTTC | 1 cut(s) | 1689 |
| SaqAI | TTAA | 2 cut(s) | 405, 921 |
| SatI | GCNGC | 6 cut(s) | 89, 615, 1417, 1506, 1717, 1755 |
| Sau3AI | GATC | 6 cut(s) | 202, 314, 397, 836, 1526, 1705 |
| Sau96I | GGNCC | 2 cut(s) | 898, 1574 |
| SchI | GAGTC | 4 cut(s) | 564, 839, 979, 1117 |
| ScrFI | CCNGG | 2 cut(s) | 1207, 1497 |
| SduI | GDGCHC | 1 cut(s) | 430 |
| SfaNI | GCATC | 9 cut(s) | 511, 517, 539, 719, 844, 1074, 1083, 1269, 1391 |
| SfcI | CTRYAG | 1 cut(s) | 1506 |
| SfuI | TTCGAA | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 898 |
| SpeI | ACTAGT | 1 cut(s) | 391 |
| Sse9I | AATT | 8 cut(s) | 44, 631, 799, 1036, 1232, 1297, 1517, 1590 |
| SsiI | CCGC | 4 cut(s) | 61, 1450, 1716, 1752 |
| SspMI | CTAG | 3 cut(s) | 360, 392, 444 |
| StyD4I | CCNGG | 2 cut(s) | 1205, 1495 |
| StyI | CCWWGG | 5 cut(s) | 330, 507, 888, 1550, 1648 |
| TaaI | ACNGT | 2 cut(s) | 236, 1102 |
| TaiI | ACGT | 1 cut(s) | 762 |
| TaqI | TCGA | 3 cut(s) | 93, 119, 221 |
| TasI | AATT | 8 cut(s) | 44, 631, 799, 1036, 1232, 1297, 1517, 1590 |
| TauI | GCSGC | 1 cut(s) | 1719 |
| Tru1I | TTAA | 2 cut(s) | 405, 921 |
| Tru9I | TTAA | 2 cut(s) | 405, 921 |
| TscAI | CASTG | 7 cut(s) | 173, 477, 520, 798, 987, 1375, 1726 |
| TseFI | GTSAC | 2 cut(s) | 842, 1366 |
| TseI | GCWGC | 5 cut(s) | 88, 614, 1416, 1505, 1754 |
| Tsp45I | GTSAC | 2 cut(s) | 842, 1366 |
| TspGWI | ACGGA | 1 cut(s) | 712 |
| TspRI | CASTG | 7 cut(s) | 173, 477, 520, 798, 987, 1375, 1726 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1076 |
| VpaK11BI | GGWCC | 1 cut(s) | 898 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 506 |
| XapI | RAATTY | 4 cut(s) | 44, 631, 799, 1517 |
| XceI | RCATGY | 4 cut(s) | 812, 1009, 1286, 1663 |
| XmnI | GAANNNNTTC | 2 cut(s) | 14, 466 |
| XspI | CTAG | 3 cut(s) | 360, 392, 444 |
| Zsp2I | ATGCAT | 4 cut(s) | 532, 696, 1077, 1284 |