MD02G1058800.v1.1

Ninja-family protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
4712010 .. 4715455
3446 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1058800.v1.1.491

Sequence Viewer

Length: 1773 bp
ATGTTTTTGAACATCTTCTTCTTCCCCATTACATTTTGTACCAAATTTTACTTCTCTCTCCGCCCCCTCACTCTTCTCTGCACCAAGCAGCTCGATTTAGGGCTTCATCATTTCTCTTCGAATCAAGGAATCACTTTTTGGAATGATTGTTCTTTGTGTTGGTGTCAGTGTGGTTGGGGATATCTTCTGAATAGAATAGAGGATCGGAAAGGGTTATGCTCGATTTCTATTGACAGTTATTCTCAGTCCAAAAAAAAAAAAAAAATGGAGGATGATAATGGACTTGAACTTAGTTTGGGTCTCTCTTTTGGTGGATCATCTGCCAAAGCCAAGGGTAAAAATGGTGCTTCCCCAAATGCTAGAGCAGAAGAAGGTGATAGAAGCAACAAACTAGTGGATCATTTTAAGGACTTTCTTCATGGTGGGGCTCAAAAACAAGAATCTAGTAGTAGCTCTCAAAGAAGTGATTCAGTGAAACCTAAAGAAAACTTCTTCAATGACCTTTCCAAGGCCAGTGTTGATGCTGATGCATCAATGAACTTGAACGGGAGAGGAGTCTGGGGTGCAAACAATAACAAGTCTGATGAAACAGAGGAGGAGAAACAGACTGAGGCTGCTAATAAACGCAAGAATTTGTTTGACGAGATGAACCATCAAAAGAAGCATGAGAGAGAAGCTCATTACTCTGATATGCATGACAAGACAAAAGCATCACACATTTCCGTTACAGAAGATGGCTCAACTGCTGAAAATGAAGACGTGGCAGATTCTGAAGTGGAGGGTTCATCCTCAGTGCCAAATTCTCAACATGTTGAGGGTGCCAAGCGATTTGTTGGATCTGGTGACTCTTCTGATGCTCAGAAGGAAGTTCGCAGGTTTGCTGATTCCAAGGTTGTGGACCTAAATGGACTGGAGGGGTTTAATATCTCATCAGAAAATGAATACAAGCTTGGGAATATGGCGTATGGGAGTCCATTCTCAGTGCAATCAGTAAAGATGATGAACATGCCTTATTCTCTCCCGACAAAGGAATCTAATTCAGTTGGTGCGACCACCACATCAGGACATCCAATGCATGGGAAGATGCAGGCGATGCCTACGGTTACTGGTGAGCGAACAGGGACTCAACCTGTGAATCCTAAAAACTTGCCAGTTATGTTTGGCTATTCACCTGTCCAGCTCCCAATGTTTGATAAAGATAATGCCTGGGGTGCGATTCCTCATGCTCAACAATTCCATCCTGCCTATGCTGGCAGAAATCCTCCTAACTCAGCTATGATGCATGTCGCTTCATATAATTCATCTGATATTGCACAATATGATGGGAGGATGTTAGAACGGGCGAGAGGTGATAGCAAAAAGAATGTCACTGAAGAGGACGCATCTTCTCAGGCAGAAGAAGACACAAAAATAAGCAGCGCGAACCTCAGGATGAAAGAGGTACCTGACCGCCCAACGGCAGAGGACTTATCTCTTGATTTTTCATCTATAAAGCCAGGTATTGCTGCAGACATAAAATTTGAGGGATCTGGTTCCTCCCCGAATCTACCATGGGTTTCTACCAAAGGTCAAGGCCCCAATGGTAAGACAATTTCTGGTGTAACTTACCGATACAGCGCAAACCAAATCAGAATAGTTTGTGCTTGCCATGGCTTGCACATGTCCCCTGAAGAGTTTGTTCGTCATGCGAGCGAAGAGCCTTCTGATCCAGAAAGCGGCACTGGTTTGGCAACATTTCCAAATGGGAATCCCGCTGCCTCAGCTCAGACCTGA

Protein Analysis

591

Amino Acids

64.54

Weight (kDa)

5.87

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010854)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 864
Acc65I GGTACC 1 cut(s) 1441
AccB1I GGYRCC 2 cut(s) 818, 1441
AccB7I CCANNNNNTGG 1 cut(s) 1076
AccII CGCG 1 cut(s) 1421
AciI CCGC 4 cut(s) 61, 1450, 1716, 1752
AclWI GGATC 6 cut(s) 210, 322, 405, 844, 1534, 1700
AcsI RAATTY 4 cut(s) 44, 631, 799, 1517
AcuI CTGAAG 3 cut(s) 792, 1392, 1689
AfaI GTAC 2 cut(s) 40, 1443
AfiI CCNNNNNNNGG 5 cut(s) 508, 1027, 1076, 1456, 1715
AflIII ACRYGT 2 cut(s) 808, 1659
AgsI TTSAA 4 cut(s) 10, 287, 496, 544
AhlI ACTAGT 1 cut(s) 391
AjiI CACGTC 1 cut(s) 760
AjnI CCWGG 2 cut(s) 1205, 1495
AjuI GAANNNNNNNTTGG 6 cut(s) 35, 67, 121, 153, 933, 965
AloI GAACNNNNNNTCC 2 cut(s) 133, 165
AluBI AGCT 7 cut(s) 91, 453, 677, 949, 1180, 1274, 1763
AluI AGCT 7 cut(s) 91, 453, 677, 949, 1180, 1274, 1763
Alw26I GTCTC 1 cut(s) 305
AlwI GGATC 6 cut(s) 210, 322, 405, 844, 1534, 1700
AlwNI CAGNNNCTG 1 cut(s) 770
AoxI GGCC 2 cut(s) 510, 1573
ApeKI GCWGC 5 cut(s) 88, 614, 1416, 1505, 1754
ApoI RAATTY 4 cut(s) 44, 631, 799, 1517
ArsI GACNNNNNNTTYG 4 cut(s) 1350, 1382, 1502, 1534
Asp700I GAANNNNTTC 2 cut(s) 14, 466
Asp718I GGTACC 1 cut(s) 1441
AspLEI GCGC 2 cut(s) 1421, 1619
AspS9I GGNCC 2 cut(s) 898, 1574
AsuHPI GGTGA 5 cut(s) 386, 854, 1121, 1161, 1361
AsuII TTCGAA 1 cut(s) 119
AvaII GGWCC 1 cut(s) 898
AxyI CCTNAGG 1 cut(s) 1427
BanI GGYRCC 2 cut(s) 818, 1441
BanII GRGCYC 1 cut(s) 430
BbsI GAAGAC 2 cut(s) 762, 1407
BbvCI CCTCAGC 1 cut(s) 1759
BbvI GCAGC 5 cut(s) 100, 601, 1428, 1492, 1741
BccI CCATC 4 cut(s) 660, 728, 1245, 1316
BceAI ACGGC 1 cut(s) 1473
BciT130I CCWGG 2 cut(s) 1207, 1497
BcoDI GTCTC 1 cut(s) 305
BcuI ACTAGT 1 cut(s) 391
BfaI CTAG 3 cut(s) 360, 392, 444
BfmI CTRYAG 1 cut(s) 1506
BfuAI ACCTGC 1 cut(s) 864
BisI GCNGC 6 cut(s) 89, 615, 1417, 1506, 1717, 1755
BlsI GCNGC 6 cut(s) 90, 616, 1418, 1507, 1718, 1756
Bme1390I CCNGG 2 cut(s) 1207, 1497
Bme18I GGWCC 1 cut(s) 898
BmgBI CACGTC 1 cut(s) 760
BmgT120I GGNCC 2 cut(s) 898, 1574
BmiI GGNNCC 4 cut(s) 820, 1443, 1534, 1576
BmrFI CCNGG 2 cut(s) 1207, 1497
BmsI GCATC 9 cut(s) 511, 517, 539, 719, 844, 1074, 1083, 1269, 1391
BpiI GAAGAC 2 cut(s) 762, 1407
BplI GAGNNNNNCTC 2 cut(s) 661, 693
BpmI CTGGAG 1 cut(s) 932
Bpu10I CCTNAGC 1 cut(s) 1759
Bpu14I TTCGAA 1 cut(s) 119
BsaI GGTCTC 1 cut(s) 305
BsaJI CCNNGG 6 cut(s) 330, 507, 888, 1206, 1550, 1648
Bsc4I CCNNNNNNNGG 5 cut(s) 508, 1027, 1076, 1456, 1715
Bse1I ACTGG 5 cut(s) 513, 915, 1111, 1151, 1726
Bse21I CCTNAGG 1 cut(s) 1427
BseBI CCWGG 2 cut(s) 1207, 1497
BseDI CCNNGG 6 cut(s) 330, 507, 888, 1206, 1550, 1648
BseGI GGATG 6 cut(s) 277, 785, 1066, 1237, 1335, 1437
BseLI CCNNNNNNNGG 5 cut(s) 508, 1027, 1076, 1456, 1715
BseMII CTCAG 9 cut(s) 257, 600, 804, 872, 993, 1284, 1403, 1441, 1773
BseNI ACTGG 5 cut(s) 513, 915, 1111, 1151, 1726
BseRI GAGGAG 3 cut(s) 567, 608, 611
BseXI GCAGC 5 cut(s) 100, 601, 1428, 1492, 1741
BsgI GTGCAG 1 cut(s) 64
Bsh1236I CGCG 1 cut(s) 1421
BshFI GGCC 2 cut(s) 512, 1575
BshNI GGYRCC 2 cut(s) 818, 1441
BslFI GGGAC 2 cut(s) 1135, 1648
BslI CCNNNNNNNGG 5 cut(s) 508, 1027, 1076, 1456, 1715
BsmAI GTCTC 1 cut(s) 305
BsmFI GGGAC 2 cut(s) 1135, 1648
BsnI GGCC 2 cut(s) 512, 1575
Bso31I GGTCTC 1 cut(s) 305
Bsp119I TTCGAA 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 6 cut(s) 202, 314, 397, 836, 1526, 1705
Bsp19I CCATGG 2 cut(s) 1550, 1648
BspACI CCGC 4 cut(s) 61, 1450, 1716, 1752
BspANI GGCC 2 cut(s) 512, 1575
BspCNI CTCAG 9 cut(s) 256, 601, 803, 871, 992, 1283, 1402, 1440, 1772
BspFNI CGCG 1 cut(s) 1421
BspLI GGNNCC 4 cut(s) 820, 1443, 1534, 1576
BspMAI CTGCAG 1 cut(s) 1510
BspMI ACCTGC 1 cut(s) 864
BspPI GGATC 6 cut(s) 210, 322, 405, 844, 1534, 1700
BspQI GCTCTTC 1 cut(s) 1689
BspT104I TTCGAA 1 cut(s) 119
BspT107I GGYRCC 2 cut(s) 818, 1441
BspTNI GGTCTC 1 cut(s) 305
BsrI ACTGG 5 cut(s) 513, 915, 1111, 1151, 1726
BssECI CCNNGG 6 cut(s) 330, 507, 888, 1206, 1550, 1648
BssMI GATC 6 cut(s) 202, 314, 397, 836, 1526, 1705
BssT1I CCWWGG 5 cut(s) 330, 507, 888, 1550, 1648
Bst2UI CCWGG 2 cut(s) 1207, 1497
Bst4CI ACNGT 2 cut(s) 236, 1102
Bst6I CTCTTC 6 cut(s) 78, 121, 853, 1368, 1665, 1689
BstAPI GCANNNNNTGC 1 cut(s) 1093
BstBI TTCGAA 1 cut(s) 119
BstC8I GCNNGC 5 cut(s) 1089, 1252, 1645, 1655, 1690
BstDSI CCRYGG 2 cut(s) 1550, 1648
BstENI CCTNNNNNAGG 1 cut(s) 506
BstF5I GGATG 6 cut(s) 277, 785, 1066, 1237, 1335, 1437
BstFNI CGCG 1 cut(s) 1421
BstHHI GCGC 2 cut(s) 1421, 1619
BstKTI GATC 6 cut(s) 205, 317, 400, 839, 1529, 1708
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 6 cut(s) 202, 314, 397, 836, 1526, 1705
BstMWI GCNNNNNNNGC 3 cut(s) 1093, 1211, 1760
BstNI CCWGG 2 cut(s) 1207, 1497
BstNSI RCATGY 4 cut(s) 812, 1009, 1286, 1663
BstSCI CCNGG 2 cut(s) 1205, 1495
BstSFI CTRYAG 1 cut(s) 1506
BstUI CGCG 1 cut(s) 1421
BstV1I GCAGC 5 cut(s) 100, 601, 1428, 1492, 1741
BstV2I GAAGAC 2 cut(s) 762, 1407
BstX2I RGATCY 2 cut(s) 836, 1526
BstXI CCANNNNNNTGG 1 cut(s) 895
BstYI RGATCY 2 cut(s) 836, 1526
Bsu36I CCTNAGG 1 cut(s) 1427
BsuRI GGCC 2 cut(s) 512, 1575
BtgI CCRYGG 2 cut(s) 1550, 1648
BtgZI GCGATG 1 cut(s) 1106
BtrI CACGTC 1 cut(s) 760
BtsCI GGATG 6 cut(s) 277, 785, 1066, 1237, 1335, 1437
BtsIMutI CAGTG 7 cut(s) 173, 477, 520, 798, 987, 1368, 1719
BveI ACCTGC 1 cut(s) 864
Cac8I GCNNGC 5 cut(s) 1089, 1252, 1645, 1655, 1690
CaiI CAGNNNCTG 1 cut(s) 770
CfoI GCGC 2 cut(s) 1421, 1619
Cfr13I GGNCC 2 cut(s) 898, 1574
CseI GACGC 1 cut(s) 1388
Csp6I GTAC 2 cut(s) 39, 1442
CviQI GTAC 2 cut(s) 39, 1442
DpnI GATC 6 cut(s) 204, 316, 399, 838, 1528, 1707
DpnII GATC 6 cut(s) 202, 314, 397, 836, 1526, 1705
Eam1104I CTCTTC 6 cut(s) 78, 121, 853, 1368, 1665, 1689
EarI CTCTTC 6 cut(s) 78, 121, 853, 1368, 1665, 1689
EciI GGCGGA 1 cut(s) 50
Eco130I CCWWGG 5 cut(s) 330, 507, 888, 1550, 1648
Eco24I GRGCYC 1 cut(s) 430
Eco31I GGTCTC 1 cut(s) 305
Eco32I GATATC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 898
Eco57I CTGAAG 3 cut(s) 792, 1392, 1689
Eco81I CCTNAGG 1 cut(s) 1427
EcoNI CCTNNNNNAGG 1 cut(s) 506
EcoO109I RGGNCCY 1 cut(s) 1574
EcoRII CCWGG 2 cut(s) 1205, 1495
EcoRV GATATC 1 cut(s) 182
EcoT14I CCWWGG 5 cut(s) 330, 507, 888, 1550, 1648
EcoT22I ATGCAT 4 cut(s) 532, 696, 1077, 1284
EcoT38I GRGCYC 1 cut(s) 430
ErhI CCWWGG 5 cut(s) 330, 507, 888, 1550, 1648
FaqI GGGAC 2 cut(s) 1135, 1648
FauI CCCGC 1 cut(s) 1759
Fnu4HI GCNGC 6 cut(s) 89, 615, 1417, 1506, 1717, 1755
FokI GGATG 6 cut(s) 284, 772, 1053, 1224, 1342, 1444
FriOI GRGCYC 1 cut(s) 430
Fsp4HI GCNGC 6 cut(s) 89, 615, 1417, 1506, 1717, 1755
FspBI CTAG 3 cut(s) 360, 392, 444
GlaI GCGC 2 cut(s) 1420, 1618
GluI GCNGC 6 cut(s) 89, 615, 1417, 1506, 1717, 1755
GsuI CTGGAG 1 cut(s) 932
HaeIII GGCC 2 cut(s) 512, 1575
HgaI GACGC 1 cut(s) 1388
HhaI GCGC 2 cut(s) 1421, 1619
Hin6I GCGC 2 cut(s) 1419, 1617
HinP1I GCGC 2 cut(s) 1419, 1617
HindIII AAGCTT 1 cut(s) 947
HphI GGTGA 5 cut(s) 386, 854, 1121, 1161, 1361
Hpy166II GTNNAC 1 cut(s) 898
Hpy188III TCNNGA 5 cut(s) 1021, 1062, 1429, 1475, 1709
Hpy8I GTNNAC 1 cut(s) 898
HpyAV CCTTC 3 cut(s) 365, 856, 1710
HpyCH4III ACNGT 2 cut(s) 236, 1102
HpyCH4IV ACGT 1 cut(s) 759
HpyF10VI GCNNNNNNNGC 3 cut(s) 1093, 1211, 1760
HpySE526I ACGT 1 cut(s) 759
HspAI GCGC 2 cut(s) 1419, 1617
KpnI GGTACC 1 cut(s) 1445
Kzo9I GATC 6 cut(s) 202, 314, 397, 836, 1526, 1705
LguI GCTCTTC 1 cut(s) 1689
LmnI GCTCC 1 cut(s) 1185
Lsp1109I GCAGC 5 cut(s) 100, 601, 1428, 1492, 1741
LweI GCATC 9 cut(s) 511, 517, 539, 719, 844, 1074, 1083, 1269, 1391
MaeI CTAG 3 cut(s) 360, 392, 444
MaeII ACGT 1 cut(s) 759
MaeIII GTNAC 5 cut(s) 724, 842, 1102, 1366, 1600
MalI GATC 6 cut(s) 204, 316, 399, 838, 1528, 1707
MboI GATC 6 cut(s) 202, 314, 397, 836, 1526, 1705
MflI RGATCY 2 cut(s) 836, 1526
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 8 cut(s) 44, 631, 799, 1036, 1232, 1297, 1517, 1590
MlyI GAGTC 4 cut(s) 564, 839, 979, 1117
MmeI TCCRAC 1 cut(s) 814
Mph1103I ATGCAT 4 cut(s) 532, 696, 1077, 1284
MroXI GAANNNNTTC 2 cut(s) 14, 466
MseI TTAA 2 cut(s) 405, 921
MspA1I CMGCKG 1 cut(s) 1754
MspR9I CCNGG 2 cut(s) 1207, 1497
MvaI CCWGG 2 cut(s) 1207, 1497
MvnI CGCG 1 cut(s) 1421
MwoI GCNNNNNNNGC 3 cut(s) 1093, 1211, 1760
NcoI CCATGG 2 cut(s) 1550, 1648
NdeII GATC 6 cut(s) 202, 314, 397, 836, 1526, 1705
NlaIV GGNNCC 4 cut(s) 820, 1443, 1534, 1576
NmuCI GTSAC 2 cut(s) 842, 1366
NsiI ATGCAT 4 cut(s) 532, 696, 1077, 1284
NspI RCATGY 4 cut(s) 812, 1009, 1286, 1663
NspV TTCGAA 1 cut(s) 119
PciI ACATGT 2 cut(s) 808, 1659
PciSI GCTCTTC 1 cut(s) 1689
PdmI GAANNNNTTC 2 cut(s) 14, 466
PflMI CCANNNNNTGG 1 cut(s) 1076
PkrI GCNGC 6 cut(s) 90, 616, 1418, 1507, 1718, 1756
PleI GAGTC 4 cut(s) 563, 839, 978, 1117
PpsI GAGTC 4 cut(s) 563, 839, 978, 1117
PscI ACATGT 2 cut(s) 808, 1659
Psp6I CCWGG 2 cut(s) 1205, 1495
PspGI CCWGG 2 cut(s) 1205, 1495
PspN4I GGNNCC 4 cut(s) 820, 1443, 1534, 1576
PspPI GGNCC 2 cut(s) 898, 1574
PstI CTGCAG 1 cut(s) 1510
PstNI CAGNNNCTG 1 cut(s) 770
PsuI RGATCY 2 cut(s) 836, 1526
RsaI GTAC 2 cut(s) 40, 1443
RsaNI GTAC 2 cut(s) 39, 1442
SapI GCTCTTC 1 cut(s) 1689
SaqAI TTAA 2 cut(s) 405, 921
SatI GCNGC 6 cut(s) 89, 615, 1417, 1506, 1717, 1755
Sau3AI GATC 6 cut(s) 202, 314, 397, 836, 1526, 1705
Sau96I GGNCC 2 cut(s) 898, 1574
SchI GAGTC 4 cut(s) 564, 839, 979, 1117
ScrFI CCNGG 2 cut(s) 1207, 1497
SduI GDGCHC 1 cut(s) 430
SfaNI GCATC 9 cut(s) 511, 517, 539, 719, 844, 1074, 1083, 1269, 1391
SfcI CTRYAG 1 cut(s) 1506
SfuI TTCGAA 1 cut(s) 119
SinI GGWCC 1 cut(s) 898
SpeI ACTAGT 1 cut(s) 391
Sse9I AATT 8 cut(s) 44, 631, 799, 1036, 1232, 1297, 1517, 1590
SsiI CCGC 4 cut(s) 61, 1450, 1716, 1752
SspMI CTAG 3 cut(s) 360, 392, 444
StyD4I CCNGG 2 cut(s) 1205, 1495
StyI CCWWGG 5 cut(s) 330, 507, 888, 1550, 1648
TaaI ACNGT 2 cut(s) 236, 1102
TaiI ACGT 1 cut(s) 762
TaqI TCGA 3 cut(s) 93, 119, 221
TasI AATT 8 cut(s) 44, 631, 799, 1036, 1232, 1297, 1517, 1590
TauI GCSGC 1 cut(s) 1719
Tru1I TTAA 2 cut(s) 405, 921
Tru9I TTAA 2 cut(s) 405, 921
TscAI CASTG 7 cut(s) 173, 477, 520, 798, 987, 1375, 1726
TseFI GTSAC 2 cut(s) 842, 1366
TseI GCWGC 5 cut(s) 88, 614, 1416, 1505, 1754
Tsp45I GTSAC 2 cut(s) 842, 1366
TspGWI ACGGA 1 cut(s) 712
TspRI CASTG 7 cut(s) 173, 477, 520, 798, 987, 1375, 1726
Van91I CCANNNNNTGG 1 cut(s) 1076
VpaK11BI GGWCC 1 cut(s) 898
XagI CCTNNNNNAGG 1 cut(s) 506
XapI RAATTY 4 cut(s) 44, 631, 799, 1517
XceI RCATGY 4 cut(s) 812, 1009, 1286, 1663
XmnI GAANNNNTTC 2 cut(s) 14, 466
XspI CTAG 3 cut(s) 360, 392, 444
Zsp2I ATGCAT 4 cut(s) 532, 696, 1077, 1284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.