Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0010854

Physical Location & Seq

Genomic Coordinates Forward (+)

19933968 .. 19937789

Gene Structure 3822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G224200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGGAGGATGAAAATGGACTTGAGCTTAGCTTGGGTCTATCTTGTGGTGGATCATCTGCCAAATTCAAGGGTAAAAGTGGTGCTCCCTCGAATACTAAAGCAGAAGAAGGTGATAGAAGCAGCAAACTAGCGGATGATTTTAAGGACTTTCTTCATGGTGGGGCTCAGAAACAAGACTCAAGTAGTAGCTCTCAAAGAAGTGATTCAGTGAAACCTAAGGAAAACTTCTTTAATGACCTTTCCAAGGCCAATGTTGATGCAGATGCGTCAATCAACTTGAACGGGAGAGGAGTCTGGGTTGCCAACAATAACAAGTCTGATGAATTAGAAGAGGAAAAACGGTCAGAGGCTGGAAACAAACGCAAGAGTTTGTTCAACGAGATGAACCATCAAAAGAAGCATGAGAGAGAAACTCATTACACTGATATGCATGACAAGACGAGAACATCACACATTTCCATAACAGAGGATGGCTCAACTGCTGAAAATGAAGACGTGGCAGATTCTGAAGTGGAGGGTTCATCCTCAGTGCTGATTTCCCAACATGATGAGGGATCAAAGCGATTTGTTGGATCCGATGACTCTTCCGAAGCTCAGAAGGAGGTTCGCCGGTTTGCTGAATCAAGTGTTGTGGACCTAAATGGGCAGAAGAGGTTTAATATTTCAGCTGAAAATAAGCTTGGGAACATGGCATATGGCAGTCCATTCTCAGTGCAATCAGTAAACATGATGAACATGCCTTACTCTCTTCCTATGAAGGAGTCTAGCTCTGTTGGTGCCACCAGCACATCGGGTCATCCGATGCATGGAATGATGCAGGTGATGCCTACTGTGACTAGTGAGCGATCAGGGACTCAACCTGTGAATCCTGGAAACTTGCCAGTTTTGTTTGGCTATTCACCAGTCCAGCTCCCAATGTTGGATAAGGATAATTCTTGGGGTTTGGTTCCTCACACTCAACAATTCCATCCTTCCTATGCTGGCAGAAATCCACCAAACTCAGCTGGGATGCAAGTAATTTCACATAATTCATCTGATGTAGCACAATATGATGGGAGGATGTTAGAACGTGGCAGAGGCGATGGCAAACAGAATGTCACTGAAGAGGGCTCCTCTTCTCAGGCAGAAGAAGACATGAAAGTAAACAGCACAAACCTCAGGATAAAAGATGCACCTGACCGCTCAACGGCAGAGGACTTCTCTCTTGATTTTTCAGCTATAAAACCAGGTATTGCTGCAGACATAAAATTTGGGGGATCTGGTTCCCGCCCAAATCTGCCATGGGTTTCTACCAAAGGTCCAGGCCCAAACGGTAGGACAATTTCTGGCGTTACTTACAGATATGGGGCAAACCAAATCAGGATAGTTTGTGCTTGCCATAGTTTGCACATGTCCCCCGAAGAGTTTGTTCGTCATGCAAGCGAAGAACCTTCTAATCCCGAAAGTGGCACTGGTATGGCGACGTTTCCAAATGGCAATCCTGCGGCCTCTGCTCAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EAR Jas

Protein Analysis

501

Amino Acids

54.0

Weight (kDa)

5.46

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28910 AT4G28910 AT4G28910
fragaria_vesca	FvH4_1g05760 FvH4_1g05760 FvH4_1g05760
malus_domestica	MD02G1058800.v1.1 MD15G1193100.v1.1
prunus_persica	Prupe.7G224200_v2.0.a1
pyrus_communis	pycom02g04760 pycom15g17290
rosa_chinensis	RchiOBHm_Chr2g0091401
rosa_laevigata	RLG00000016221
rosa_roxburghii	Rroxscaffold_2G00150110
rosa_rugosa	Rorug02G0017500
rosa_samantha	Rh2AG062500 Rh2BG061500 Rh2CG063600 Rh2DG062100
rosa_wichuraiana	Rw2G005770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	808
Acc36I	ACCTGC	1 cut(s)	808
AccB1I	GGYRCC	1 cut(s)	776
AccBSI	CCGCTC	1 cut(s)	1182
AciI	CCGC	4 cut(s)	131, 1180, 1267, 1484
AclWI	GGATC	5 cut(s)	58, 562, 567, 580, 1264
AcsI	RAATTY	2 cut(s)	62, 1247
AcuI	CTGAAG	2 cut(s)	528, 1122
AfiI	CCNNNNNNNGG	5 cut(s)	244, 806, 919, 1186, 1445
AflIII	ACRYGT	1 cut(s)	1389
AgsI	TTSAA	3 cut(s)	67, 280, 376
AhlI	ACTAGT	1 cut(s)	836
AjiI	CACGTC	1 cut(s)	496
AjnI	CCWGG	3 cut(s)	868, 1225, 1300
AjuI	GAANNNNNNNTTGG	2 cut(s)	663, 695
Alw21I	GWGCWC	1 cut(s)	85
AlwI	GGATC	5 cut(s)	58, 562, 567, 580, 1264
AlwNI	CAGNNNCTG	2 cut(s)	350, 506
AoxI	GGCC	3 cut(s)	246, 1303, 1485
ApeKI	GCWGC	2 cut(s)	120, 1235
ApoI	RAATTY	2 cut(s)	62, 1247
ArsI	GACNNNNNNTTYG	4 cut(s)	1080, 1112, 1232, 1264
Asp700I	GAANNNNTTC	1 cut(s)	202
AspS9I	GGNCC	3 cut(s)	634, 1298, 1304
AsuHPI	GGTGA	3 cut(s)	122, 832, 891
AvaII	GGWCC	2 cut(s)	634, 1298
AxyI	CCTNAGG	2 cut(s)	216, 1157
BamHI	GGATCC	1 cut(s)	572
BanI	GGYRCC	1 cut(s)	776
BanII	GRGCYC	2 cut(s)	166, 1112
BbsI	GAAGAC	2 cut(s)	498, 1137
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	2 cut(s)	132, 1222
BccI	CCATC	5 cut(s)	396, 464, 975, 1046, 1076
BceAI	ACGGC	1 cut(s)	1203
BciT130I	CCWGG	3 cut(s)	870, 1227, 1302
BcuI	ACTAGT	1 cut(s)	836
BfaI	CTAG	3 cut(s)	128, 765, 837
BfmI	CTRYAG	1 cut(s)	1236
BfuAI	ACCTGC	1 cut(s)	808
BisI	GCNGC	3 cut(s)	121, 1236, 1485
BlpI	GCTNAGC	1 cut(s)	26
BlsI	GCNGC	3 cut(s)	122, 1237, 1486
Bme1390I	CCNGG	3 cut(s)	870, 1227, 1302
Bme18I	GGWCC	2 cut(s)	634, 1298
BmgBI	CACGTC	1 cut(s)	496
BmgT120I	GGNCC	3 cut(s)	634, 1298, 1304
BmiI	GGNNCC	5 cut(s)	574, 778, 948, 1111, 1264
BmrFI	CCNGG	3 cut(s)	870, 1227, 1302
BmsI	GCATC	7 cut(s)	247, 253, 792, 804, 813, 999, 1159
BpiI	GAAGAC	2 cut(s)	498, 1137
Bpu1102I	GCTNAGC	1 cut(s)	26
BpuEI	CTTGAG	2 cut(s)	41, 163
BsaJI	CCNNGG	2 cut(s)	243, 1280
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	5 cut(s)	244, 806, 919, 1186, 1445
Bse118I	RCCGGY	1 cut(s)	609
Bse1I	ACTGG	3 cut(s)	881, 902, 1456
Bse21I	CCTNAGG	2 cut(s)	216, 1157
BseBI	CCWGG	3 cut(s)	870, 1227, 1302
BseDI	CCNNGG	2 cut(s)	243, 1280
BseGI	GGATG	8 cut(s)	13, 139, 475, 521, 796, 967, 1014, 1065
BseLI	CCNNNNNNNGG	5 cut(s)	244, 806, 919, 1186, 1445
BseMII	CTCAG	7 cut(s)	179, 540, 608, 723, 1014, 1133, 1171
BseNI	ACTGG	3 cut(s)	881, 902, 1456
BseRI	GAGGAG	2 cut(s)	303, 1102
BseXI	GCAGC	2 cut(s)	132, 1222
BseYI	CCCAGC	1 cut(s)	1004
BshFI	GGCC	3 cut(s)	248, 1305, 1487
BshNI	GGYRCC	1 cut(s)	776
BsiHKAI	GWGCWC	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	610
BslFI	GGGAC	2 cut(s)	865, 1378
BslI	CCNNNNNNNGG	5 cut(s)	244, 806, 919, 1186, 1445
BsmFI	GGGAC	2 cut(s)	865, 1378
BsnI	GGCC	3 cut(s)	248, 1305, 1487
Bsp1286I	GDGCHC	3 cut(s)	85, 166, 1112
Bsp143I	GATC	5 cut(s)	50, 554, 572, 845, 1256
Bsp1720I	GCTNAGC	1 cut(s)	26
Bsp19I	CCATGG	1 cut(s)	1280
BspACI	CCGC	4 cut(s)	131, 1180, 1267, 1484
BspANI	GGCC	3 cut(s)	248, 1305, 1487
BspCNI	CTCAG	7 cut(s)	178, 539, 607, 722, 1013, 1132, 1170
BspLI	GGNNCC	5 cut(s)	574, 778, 948, 1111, 1264
BspMAI	CTGCAG	1 cut(s)	1240
BspMI	ACCTGC	1 cut(s)	808
BspPI	GGATC	5 cut(s)	58, 562, 567, 580, 1264
BspT107I	GGYRCC	1 cut(s)	776
BsrBI	CCGCTC	1 cut(s)	1182
BsrFI	RCCGGY	1 cut(s)	609
BsrI	ACTGG	3 cut(s)	881, 902, 1456
BssAI	RCCGGY	1 cut(s)	609
BssECI	CCNNGG	2 cut(s)	243, 1280
BssMI	GATC	5 cut(s)	50, 554, 572, 845, 1256
BssT1I	CCWWGG	2 cut(s)	243, 1280
Bst2UI	CCWGG	3 cut(s)	870, 1227, 1302
Bst4CI	ACNGT	3 cut(s)	342, 832, 1313
Bst6I	CTCTTC	7 cut(s)	324, 589, 644, 753, 1098, 1120, 1395
BstAPI	GCANNNNNTGC	1 cut(s)	823
BstC8I	GCNNGC	3 cut(s)	982, 1375, 1420
BstDSI	CCRYGG	1 cut(s)	1280
BstENI	CCTNNNNNAGG	1 cut(s)	242
BstF5I	GGATG	8 cut(s)	13, 139, 475, 521, 796, 967, 1014, 1065
BstKTI	GATC	5 cut(s)	53, 557, 575, 848, 1259
BstMBI	GATC	5 cut(s)	50, 554, 572, 845, 1256
BstMWI	GCNNNNNNNGC	2 cut(s)	823, 1490
BstNI	CCWGG	3 cut(s)	870, 1227, 1302
BstNSI	RCATGY	2 cut(s)	739, 1393
BstSCI	CCNGG	3 cut(s)	868, 1225, 1300
BstSFI	CTRYAG	1 cut(s)	1236
BstV1I	GCAGC	2 cut(s)	132, 1222
BstV2I	GAAGAC	2 cut(s)	498, 1137
BstX2I	RGATCY	2 cut(s)	572, 1256
BstYI	RGATCY	2 cut(s)	572, 1256
Bsu36I	CCTNAGG	2 cut(s)	216, 1157
BsuRI	GGCC	3 cut(s)	248, 1305, 1487
BtgI	CCRYGG	1 cut(s)	1280
BtgZI	GCGATG	1 cut(s)	1095
BtrI	CACGTC	1 cut(s)	496
BtsCI	GGATG	8 cut(s)	13, 139, 475, 521, 796, 967, 1014, 1065
BtsIMutI	CAGTG	6 cut(s)	213, 420, 534, 717, 1098, 1449
BveI	ACCTGC	1 cut(s)	808
Cac8I	GCNNGC	3 cut(s)	982, 1375, 1420
CaiI	CAGNNNCTG	2 cut(s)	350, 506
Cfr10I	RCCGGY	1 cut(s)	609
Cfr13I	GGNCC	3 cut(s)	634, 1298, 1304
CseI	GACGC	1 cut(s)	255
CsiI	ACCWGGT	1 cut(s)	1225
CspCI	CAANNNNNGTGG	2 cut(s)	612, 647
DpnI	GATC	5 cut(s)	52, 556, 574, 847, 1258
DpnII	GATC	5 cut(s)	50, 554, 572, 845, 1256
Eam1104I	CTCTTC	7 cut(s)	324, 589, 644, 753, 1098, 1120, 1395
EarI	CTCTTC	7 cut(s)	324, 589, 644, 753, 1098, 1120, 1395
Eco130I	CCWWGG	2 cut(s)	243, 1280
Eco24I	GRGCYC	2 cut(s)	166, 1112
Eco47I	GGWCC	2 cut(s)	634, 1298
Eco57I	CTGAAG	2 cut(s)	528, 1122
Eco81I	CCTNAGG	2 cut(s)	216, 1157
EcoNI	CCTNNNNNAGG	1 cut(s)	242
EcoRII	CCWGG	3 cut(s)	868, 1225, 1300
EcoT14I	CCWWGG	2 cut(s)	243, 1280
EcoT22I	ATGCAT	2 cut(s)	432, 807
EcoT38I	GRGCYC	2 cut(s)	166, 1112
ErhI	CCWWGG	2 cut(s)	243, 1280
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FaqI	GGGAC	2 cut(s)	865, 1378
FauI	CCCGC	1 cut(s)	1274
FauNDI	CATATG	1 cut(s)	694
Fnu4HI	GCNGC	3 cut(s)	121, 1236, 1485
FokI	GGATG	8 cut(s)	20, 146, 482, 508, 783, 954, 1021, 1072
FriOI	GRGCYC	2 cut(s)	166, 1112
Fsp4HI	GCNGC	3 cut(s)	121, 1236, 1485
FspBI	CTAG	3 cut(s)	128, 765, 837
GluI	GCNGC	3 cut(s)	121, 1236, 1485
GsaI	CCCAGC	1 cut(s)	1008
HaeIII	GGCC	3 cut(s)	248, 1305, 1487
HapII	CCGG	1 cut(s)	610
HgaI	GACGC	1 cut(s)	255
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	9 cut(s)	176, 203, 291, 503, 581, 620, 761, 853, 865
HpaII	CCGG	1 cut(s)	610
HphI	GGTGA	3 cut(s)	122, 832, 891
Hpy166II	GTNNAC	3 cut(s)	634, 724, 1144
Hpy188III	TCNNGA	4 cut(s)	1159, 1205, 1360, 1439
Hpy8I	GTNNAC	3 cut(s)	634, 724, 1144
Hpy99I	CGWCG	1 cut(s)	1465
HpyAV	CCTTC	5 cut(s)	101, 592, 751, 981, 1440
HpyCH4III	ACNGT	3 cut(s)	342, 832, 1313
HpyCH4IV	ACGT	3 cut(s)	495, 1069, 1463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	823, 1490
HpySE526I	ACGT	3 cut(s)	495, 1069, 1463
Kzo9I	GATC	5 cut(s)	50, 554, 572, 845, 1256
LmnI	GCTCC	3 cut(s)	88, 915, 1115
Lsp1109I	GCAGC	2 cut(s)	132, 1222
LweI	GCATC	7 cut(s)	247, 253, 792, 804, 813, 999, 1159
MabI	ACCWGGT	1 cut(s)	1225
MaeI	CTAG	3 cut(s)	128, 765, 837
MaeII	ACGT	3 cut(s)	495, 1069, 1463
MaeIII	GTNAC	3 cut(s)	832, 1096, 1330
MalI	GATC	5 cut(s)	52, 556, 574, 847, 1258
MbiI	CCGCTC	1 cut(s)	1182
MboI	GATC	5 cut(s)	50, 554, 572, 845, 1256
MflI	RGATCY	2 cut(s)	572, 1256
MhlI	GDGCHC	3 cut(s)	85, 166, 1112
MluCI	AATT	8 cut(s)	62, 323, 931, 962, 1017, 1027, 1247, 1320
MlyI	GAGTC	5 cut(s)	170, 300, 575, 770, 847
MmeI	TCCRAC	2 cut(s)	550, 900
Mph1103I	ATGCAT	2 cut(s)	432, 807
MroXI	GAANNNNTTC	1 cut(s)	202
MseI	TTAA	3 cut(s)	141, 231, 657
MslI	CAYNNNNRTG	2 cut(s)	425, 1454
MspA1I	CMGCKG	2 cut(s)	668, 1004
MspI	CCGG	1 cut(s)	610
MspR9I	CCNGG	3 cut(s)	870, 1227, 1302
MvaI	CCWGG	3 cut(s)	870, 1227, 1302
MwoI	GCNNNNNNNGC	2 cut(s)	823, 1490
NcoI	CCATGG	1 cut(s)	1280
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	5 cut(s)	50, 554, 572, 845, 1256
NlaIV	GGNNCC	5 cut(s)	574, 778, 948, 1111, 1264
NmuCI	GTSAC	2 cut(s)	832, 1096
NsiI	ATGCAT	2 cut(s)	432, 807
NspI	RCATGY	2 cut(s)	739, 1393
PaqCI	CACCTGC	1 cut(s)	808
PciI	ACATGT	1 cut(s)	1389
PcsI	WCGNNNNNNNCGW	1 cut(s)	797
PdmI	GAANNNNTTC	1 cut(s)	202
PfeI	GAWTC	4 cut(s)	203, 503, 620, 865
PfoI	TCCNGGA	1 cut(s)	868
PkrI	GCNGC	3 cut(s)	122, 1237, 1486
PleI	GAGTC	5 cut(s)	170, 299, 575, 769, 847
PpsI	GAGTC	5 cut(s)	170, 299, 575, 769, 847
PscI	ACATGT	1 cut(s)	1389
Psp6I	CCWGG	3 cut(s)	868, 1225, 1300
PspFI	CCCAGC	1 cut(s)	1004
PspGI	CCWGG	3 cut(s)	868, 1225, 1300
PspN4I	GGNNCC	5 cut(s)	574, 778, 948, 1111, 1264
PspPI	GGNCC	3 cut(s)	634, 1298, 1304
PsrI	GAACNNNNNNTAC	2 cut(s)	725, 757
PstI	CTGCAG	1 cut(s)	1240
PstNI	CAGNNNCTG	2 cut(s)	350, 506
PsuI	RGATCY	2 cut(s)	572, 1256
PvuII	CAGCTG	2 cut(s)	668, 1004
RseI	CAYNNNNRTG	2 cut(s)	425, 1454
SaqAI	TTAA	3 cut(s)	141, 231, 657
SatI	GCNGC	3 cut(s)	121, 1236, 1485
Sau3AI	GATC	5 cut(s)	50, 554, 572, 845, 1256
Sau96I	GGNCC	3 cut(s)	634, 1298, 1304
SchI	GAGTC	5 cut(s)	170, 300, 575, 770, 847
ScrFI	CCNGG	3 cut(s)	870, 1227, 1302
SduI	GDGCHC	3 cut(s)	85, 166, 1112
SexAI	ACCWGGT	1 cut(s)	1225
SfaNI	GCATC	7 cut(s)	247, 253, 792, 804, 813, 999, 1159
SfcI	CTRYAG	1 cut(s)	1236
SinI	GGWCC	2 cut(s)	634, 1298
SmiMI	CAYNNNNRTG	2 cut(s)	425, 1454
SmlI	CTYRAG	2 cut(s)	20, 178
SmoI	CTYRAG	2 cut(s)	20, 178
SpeI	ACTAGT	1 cut(s)	836
Sse9I	AATT	8 cut(s)	62, 323, 931, 962, 1017, 1027, 1247, 1320
SsiI	CCGC	4 cut(s)	131, 1180, 1267, 1484
SspI	AATATT	1 cut(s)	661
SspMI	CTAG	3 cut(s)	128, 765, 837
StyD4I	CCNGG	3 cut(s)	868, 1225, 1300
StyI	CCWWGG	2 cut(s)	243, 1280
TaaI	ACNGT	3 cut(s)	342, 832, 1313
TaiI	ACGT	3 cut(s)	498, 1072, 1466
TaqI	TCGA	1 cut(s)	89
TasI	AATT	8 cut(s)	62, 323, 931, 962, 1017, 1027, 1247, 1320
TauI	GCSGC	1 cut(s)	1487
TfiI	GAWTC	4 cut(s)	203, 503, 620, 865
Tru1I	TTAA	3 cut(s)	141, 231, 657
Tru9I	TTAA	3 cut(s)	141, 231, 657
TscAI	CASTG	6 cut(s)	213, 427, 534, 717, 1105, 1456
TseFI	GTSAC	2 cut(s)	832, 1096
TseI	GCWGC	2 cut(s)	120, 1235
Tsp45I	GTSAC	2 cut(s)	832, 1096
TspRI	CASTG	6 cut(s)	213, 427, 534, 717, 1105, 1456
VpaK11BI	GGWCC	2 cut(s)	634, 1298
XagI	CCTNNNNNAGG	1 cut(s)	242
XapI	RAATTY	2 cut(s)	62, 1247
XceI	RCATGY	2 cut(s)	739, 1393
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1278
XmnI	GAANNNNTTC	1 cut(s)	202
XspI	CTAG	3 cut(s)	128, 765, 837
Zsp2I	ATGCAT	2 cut(s)	432, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.