Rroxscaffold_2G00150110

Ninja-family protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
87559408 .. 87561410
2003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00150110.1

Sequence Viewer

Length: 1545 bp
ATGGAGGATGAGAGTGGACTTGAGCTTAGCTTGGGTCTGTCTTGTGGTGGGGGATCTTCTGTGAAGTCCAAGGGTAAAAATGGTGCCTCCTCAAATACTAGAGCAGAAGAAGGTGATAGAGACAACAAACTAGCAGATGATTTTAAAGACTTTCTTCATGGAGGGGCTCAGAAGCAAGAGTCAAGTAGTAGCTCTCAAAGAAGTGATTCAGTGAAACCTAAGGAAAACTTCTTTAATGACCTCTCCAAGGCCAATGGTGATGCAGACACATCAATGAACTTGAATGGGAGAGGAGTCTGGGCTGCAAAGAATAACAAGTCTGATGAAATAGAGGAAAGACAAACAGATGCTGGTAATAAACGCAAGACTTTGTTTGAAGAGATGAACCAACAGAAGAAGCATGAAAGAGAAGCTCATTACACTGATATGCATGACAAGACAAGAGCATCCCATATTTCCGTAACAGAAGATGGCTCTACTGCTGAAAATGAAGACGTGGCAGATTCTGAAGTAGAGGGCTCAGCCTCAAGGCTGATATCCCAACATGACGATGGCTCTAAACGATTTGTTGGATCTGGTGACTCTTCTGATGCTCAGAAAGAGCTTCGCAGGTTTGCTGATTCAAGTAATGTGGATCCAAATGGGCAGAAGAGGCTTAATATTTCATCAGAAAATGATTACAAGGTTGGGAACATGACGTATGGCAGTCCATTTTCTGTGCAATCAGTAAACATGATGAATATGCCCTACTCTCTCCCGAAGGATTCTAACCCTGTTGGTCCACCCAGCACATCAGGCCATCTGATTCCTGGAATGATGCAGGTGATGCCTATTGCAAATAGTGAACGGTCAGGGACTCAACCCATGAATCCTGGAAACTTGCCAGTTATGTTTGGCTATTCACCCGTCCAGCTTCCAATATTGGATAAGGATAATTCTTGGGGTCCCCATACTCAGCAGTTTCACTATGCTGGCAGAAATCCACCAAACCCAGGTAACTGTGGACTGAAAATTTTAGGTGTCCTGTATACTATTGTGTGGGTACCCACTGTGGTGCAAGTAATTTCGCATAATACATCTGAGGCTGCACAGTATGATGGGAGATTAGAACGGGCAAAAGGTGATGGAAAACAGCATGTCACTGAAGAGGGCTCCTCTTCTCAAGCAGAAGAAGACATGAAAGTAAGCAGCACGAACCCAAGGACAAAAGATGCACCTGATCGCTCAATGGCAGAGGATTTCTCTCTTGATTTTTCAGCTATAAAACCAGGAATTGCTGCAGACATAAAATTTGGGGGATCTGGTTCCCGCCCAAATCTACCATGGGTTTCTACCAAAGGTCCAGGCCCCAATGGTAGGACGATTTCTGGTGTCACTTACAGATACAGTGCAAACCAAATCAAAATAGTTTGTGCTTGCCACGGTTCCCACATGTCCCCTGATGATTTTGTTCGGCATGCAAGTGAAGAGCCTTCTAATCCAGAAAGCGGCACAGGTTTGCCGACAGTCCCAAATGGCAATCCTGCTGCCTCTGCTCAGAGCTGA

Protein Analysis

514

Amino Acids

55.36

Weight (kDa)

5.46

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010854)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 811
Acc36I ACCTGC 2 cut(s) 600, 811
Acc65I GGTACC 1 cut(s) 1042
AccB1I GGYRCC 2 cut(s) 83, 1042
AccI GTMKAC 1 cut(s) 1028
AciI CCGC 2 cut(s) 1309, 1488
AclWI GGATC 5 cut(s) 61, 580, 629, 642, 1306
AcsI RAATTY 2 cut(s) 1011, 1289
AcuI CTGAAG 2 cut(s) 528, 1164
AfaI GTAC 1 cut(s) 1044
AfiI CCNNNNNNNGG 4 cut(s) 247, 992, 1356, 1487
AflIII ACRYGT 1 cut(s) 1431
AgsI TTSAA 3 cut(s) 283, 377, 624
AjiI CACGTC 1 cut(s) 496
AjnI CCWGG 5 cut(s) 808, 871, 991, 1267, 1342
AleI CACNNNNGTG 1 cut(s) 1052
AluBI AGCT 8 cut(s) 25, 30, 192, 413, 604, 913, 1259, 1542
AluI AGCT 8 cut(s) 25, 30, 192, 413, 604, 913, 1259, 1542
Alw26I GTCTC 1 cut(s) 114
AlwI GGATC 5 cut(s) 61, 580, 629, 642, 1306
AlwNI CAGNNNCTG 2 cut(s) 350, 506
AoxI GGCC 3 cut(s) 249, 796, 1345
ApeKI GCWGC 5 cut(s) 302, 1085, 1188, 1277, 1526
ApoI RAATTY 2 cut(s) 1011, 1289
ArsI GACNNNNNNTTYG 2 cut(s) 1274, 1306
Asp700I GAANNNNTTC 1 cut(s) 205
Asp718I GGTACC 1 cut(s) 1042
AspS9I GGNCC 4 cut(s) 779, 944, 1340, 1346
AsuHPI GGTGA 6 cut(s) 125, 269, 590, 835, 894, 1133
AvaII GGWCC 3 cut(s) 779, 944, 1340
AxyI CCTNAGG 1 cut(s) 219
BamHI GGATCC 1 cut(s) 634
BanI GGYRCC 2 cut(s) 83, 1042
BanII GRGCYC 3 cut(s) 169, 521, 1154
BbsI GAAGAC 2 cut(s) 498, 1179
BbvI GCAGC 5 cut(s) 289, 1072, 1200, 1264, 1513
BccI CCATC 5 cut(s) 464, 545, 807, 1091, 1118
BciT130I CCWGG 5 cut(s) 810, 873, 993, 1269, 1344
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 2 cut(s) 99, 131
BfmI CTRYAG 1 cut(s) 1278
BfuAI ACCTGC 2 cut(s) 600, 811
BisI GCNGC 6 cut(s) 303, 1086, 1189, 1278, 1489, 1527
BlpI GCTNAGC 2 cut(s) 26, 520
BlsI GCNGC 6 cut(s) 304, 1087, 1190, 1279, 1490, 1528
Bme1390I CCNGG 5 cut(s) 810, 873, 993, 1269, 1344
Bme18I GGWCC 3 cut(s) 779, 944, 1340
BmgBI CACGTC 1 cut(s) 496
BmgT120I GGNCC 4 cut(s) 779, 944, 1340, 1346
BmiI GGNNCC 9 cut(s) 85, 636, 945, 946, 1044, 1153, 1306, 1348, 1426
BmrFI CCNGG 5 cut(s) 810, 873, 993, 1269, 1344
BmsI GCATC 7 cut(s) 250, 337, 455, 580, 807, 816, 1201
BpiI GAAGAC 2 cut(s) 498, 1179
BplI GAGNNNNNCTC 4 cut(s) 1139, 1171, 1226, 1258
Bpu1102I GCTNAGC 2 cut(s) 26, 520
BpuEI CTTGAG 3 cut(s) 41, 511, 1146
BsaJI CCNNGG 6 cut(s) 69, 246, 991, 1199, 1322, 1420
Bsc4I CCNNNNNNNGG 4 cut(s) 247, 992, 1356, 1487
Bse1I ACTGG 1 cut(s) 884
Bse21I CCTNAGG 1 cut(s) 219
BseBI CCWGG 5 cut(s) 810, 873, 993, 1269, 1344
BseDI CCNNGG 6 cut(s) 69, 246, 991, 1199, 1322, 1420
BseGI GGATG 2 cut(s) 13, 446
BseLI CCNNNNNNNGG 4 cut(s) 247, 992, 1356, 1487
BseMII CTCAG 5 cut(s) 182, 534, 608, 968, 1071
BseNI ACTGG 1 cut(s) 884
BseRI GAGGAG 3 cut(s) 79, 306, 1144
BseXI GCAGC 5 cut(s) 289, 1072, 1200, 1264, 1513
BseYI CCCAGC 1 cut(s) 785
BsgI GTGCAG 1 cut(s) 1071
BshFI GGCC 3 cut(s) 251, 798, 1347
BshNI GGYRCC 2 cut(s) 83, 1042
BslFI GGGAC 4 cut(s) 868, 930, 1420, 1493
BslI CCNNNNNNNGG 4 cut(s) 247, 992, 1356, 1487
BsmAI GTCTC 1 cut(s) 114
BsmFI GGGAC 4 cut(s) 868, 930, 1420, 1493
BsnI GGCC 3 cut(s) 251, 798, 1347
Bsp1286I GDGCHC 3 cut(s) 169, 521, 1154
Bsp143I GATC 5 cut(s) 53, 572, 634, 1219, 1298
Bsp1720I GCTNAGC 2 cut(s) 26, 520
Bsp19I CCATGG 1 cut(s) 1322
BspACI CCGC 2 cut(s) 1309, 1488
BspANI GGCC 3 cut(s) 251, 798, 1347
BspCNI CTCAG 5 cut(s) 181, 533, 607, 967, 1072
BspLI GGNNCC 9 cut(s) 85, 636, 945, 946, 1044, 1153, 1306, 1348, 1426
BspMAI CTGCAG 1 cut(s) 1282
BspMI ACCTGC 2 cut(s) 600, 811
BspPI GGATC 5 cut(s) 61, 580, 629, 642, 1306
BspQI GCTCTTC 1 cut(s) 1461
BspT107I GGYRCC 2 cut(s) 83, 1042
BsrI ACTGG 1 cut(s) 884
BssECI CCNNGG 6 cut(s) 69, 246, 991, 1199, 1322, 1420
BssMI GATC 5 cut(s) 53, 572, 634, 1219, 1298
BssNAI GTATAC 1 cut(s) 1029
BssT1I CCWWGG 4 cut(s) 69, 246, 1199, 1322
Bst1107I GTATAC 1 cut(s) 1029
Bst2UI CCWGG 5 cut(s) 810, 873, 993, 1269, 1344
Bst4CI ACNGT 7 cut(s) 849, 1001, 1051, 1092, 1388, 1424, 1507
Bst6I CTCTTC 6 cut(s) 372, 589, 644, 1140, 1162, 1461
BstAPI GCANNNNNTGC 1 cut(s) 826
BstC8I GCNNGC 3 cut(s) 973, 1417, 1458
BstDEI CTNAG 8 cut(s) 26, 168, 219, 520, 594, 954, 1080, 1536
BstDSI CCRYGG 2 cut(s) 1322, 1420
BstENI CCTNNNNNAGG 1 cut(s) 245
BstF5I GGATG 2 cut(s) 13, 446
BstKTI GATC 5 cut(s) 56, 575, 637, 1222, 1301
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 5 cut(s) 53, 572, 634, 1219, 1298
BstMWI GCNNNNNNNGC 4 cut(s) 652, 795, 826, 1532
BstNI CCWGG 5 cut(s) 810, 873, 993, 1269, 1344
BstNSI RCATGY 3 cut(s) 1139, 1435, 1460
BstSCI CCNGG 5 cut(s) 808, 871, 991, 1267, 1342
BstSFI CTRYAG 1 cut(s) 1278
BstV1I GCAGC 5 cut(s) 289, 1072, 1200, 1264, 1513
BstV2I GAAGAC 2 cut(s) 498, 1179
BstX2I RGATCY 4 cut(s) 53, 572, 634, 1298
BstYI RGATCY 4 cut(s) 53, 572, 634, 1298
BstZ17I GTATAC 1 cut(s) 1029
Bsu36I CCTNAGG 1 cut(s) 219
BsuRI GGCC 3 cut(s) 251, 798, 1347
BtgI CCRYGG 2 cut(s) 1322, 1420
BtrI CACGTC 1 cut(s) 496
BtsCI GGATG 2 cut(s) 13, 446
BtsIMutI CAGTG 5 cut(s) 216, 420, 1047, 1140, 1393
BveI ACCTGC 2 cut(s) 600, 811
Cac8I GCNNGC 3 cut(s) 973, 1417, 1458
CaiI CAGNNNCTG 2 cut(s) 350, 506
Cfr13I GGNCC 4 cut(s) 779, 944, 1340, 1346
Csp6I GTAC 1 cut(s) 1043
CspCI CAANNNNNGTGG 2 cut(s) 612, 647
CviQI GTAC 1 cut(s) 1043
DdeI CTNAG 8 cut(s) 26, 168, 219, 520, 594, 954, 1080, 1536
DpnI GATC 5 cut(s) 55, 574, 636, 1221, 1300
DpnII GATC 5 cut(s) 53, 572, 634, 1219, 1298
DraI TTTAAA 1 cut(s) 145
Eam1104I CTCTTC 6 cut(s) 372, 589, 644, 1140, 1162, 1461
EarI CTCTTC 6 cut(s) 372, 589, 644, 1140, 1162, 1461
Eco130I CCWWGG 4 cut(s) 69, 246, 1199, 1322
Eco24I GRGCYC 3 cut(s) 169, 521, 1154
Eco32I GATATC 1 cut(s) 537
Eco47I GGWCC 3 cut(s) 779, 944, 1340
Eco57I CTGAAG 2 cut(s) 528, 1164
Eco81I CCTNAGG 1 cut(s) 219
EcoNI CCTNNNNNAGG 1 cut(s) 245
EcoO109I RGGNCCY 2 cut(s) 944, 1346
EcoRII CCWGG 5 cut(s) 808, 871, 991, 1267, 1342
EcoRV GATATC 1 cut(s) 537
EcoT14I CCWWGG 4 cut(s) 69, 246, 1199, 1322
EcoT22I ATGCAT 1 cut(s) 432
EcoT38I GRGCYC 3 cut(s) 169, 521, 1154
ErhI CCWWGG 4 cut(s) 69, 246, 1199, 1322
FalI AAGNNNNNCTT 4 cut(s) 138, 170, 212, 244
FaqI GGGAC 4 cut(s) 868, 930, 1420, 1493
FauI CCCGC 1 cut(s) 1316
FblI GTMKAC 1 cut(s) 1028
Fnu4HI GCNGC 6 cut(s) 303, 1086, 1189, 1278, 1489, 1527
FokI GGATG 2 cut(s) 20, 433
FriOI GRGCYC 3 cut(s) 169, 521, 1154
Fsp4HI GCNGC 6 cut(s) 303, 1086, 1189, 1278, 1489, 1527
FspBI CTAG 2 cut(s) 99, 131
GluI GCNGC 6 cut(s) 303, 1086, 1189, 1278, 1489, 1527
GsaI CCCAGC 1 cut(s) 789
HaeIII GGCC 3 cut(s) 251, 798, 1347
HphI GGTGA 6 cut(s) 125, 269, 590, 835, 894, 1133
Hpy166II GTNNAC 6 cut(s) 17, 730, 782, 845, 1004, 1029
Hpy188I TCNGA 9 cut(s) 171, 322, 508, 589, 597, 670, 804, 1081, 1539
Hpy188III TCNNGA 3 cut(s) 757, 1247, 1481
Hpy8I GTNNAC 6 cut(s) 17, 730, 782, 845, 1004, 1029
HpyAV CCTTC 3 cut(s) 104, 754, 1482
HpyCH4III ACNGT 7 cut(s) 849, 1001, 1051, 1092, 1388, 1424, 1507
HpyCH4IV ACGT 2 cut(s) 495, 698
HpyF10VI GCNNNNNNNGC 4 cut(s) 652, 795, 826, 1532
HpyF3I CTNAG 8 cut(s) 26, 168, 219, 520, 594, 954, 1080, 1536
HpySE526I ACGT 2 cut(s) 495, 698
KflI GGGWCCC 1 cut(s) 944
KpnI GGTACC 1 cut(s) 1046
Kzo9I GATC 5 cut(s) 53, 572, 634, 1219, 1298
LguI GCTCTTC 1 cut(s) 1461
LmnI GCTCC 1 cut(s) 1157
Lsp1109I GCAGC 5 cut(s) 289, 1072, 1200, 1264, 1513
LweI GCATC 7 cut(s) 250, 337, 455, 580, 807, 816, 1201
MaeI CTAG 2 cut(s) 99, 131
MaeII ACGT 2 cut(s) 495, 698
MaeIII GTNAC 5 cut(s) 460, 578, 995, 1138, 1372
MalI GATC 5 cut(s) 55, 574, 636, 1221, 1300
MboI GATC 5 cut(s) 53, 572, 634, 1219, 1298
MflI RGATCY 4 cut(s) 53, 572, 634, 1298
MhlI GDGCHC 3 cut(s) 169, 521, 1154
MluCI AATT 5 cut(s) 934, 1011, 1062, 1272, 1289
MlyI GAGTC 4 cut(s) 188, 303, 575, 850
MmeI TCCRAC 1 cut(s) 550
Mph1103I ATGCAT 1 cut(s) 432
MroXI GAANNNNTTC 1 cut(s) 205
MseI TTAA 3 cut(s) 144, 234, 657
MslI CAYNNNNRTG 5 cut(s) 272, 425, 549, 1052, 1461
MspR9I CCNGG 5 cut(s) 810, 873, 993, 1269, 1344
MvaI CCWGG 5 cut(s) 810, 873, 993, 1269, 1344
MwoI GCNNNNNNNGC 4 cut(s) 652, 795, 826, 1532
NcoI CCATGG 1 cut(s) 1322
NdeII GATC 5 cut(s) 53, 572, 634, 1219, 1298
NlaIV GGNNCC 9 cut(s) 85, 636, 945, 946, 1044, 1153, 1306, 1348, 1426
NmuCI GTSAC 3 cut(s) 578, 1138, 1372
NsiI ATGCAT 1 cut(s) 432
NspI RCATGY 3 cut(s) 1139, 1435, 1460
OliI CACNNNNGTG 1 cut(s) 1052
PaeI GCATGC 1 cut(s) 1460
PaqCI CACCTGC 1 cut(s) 811
PciI ACATGT 1 cut(s) 1431
PciSI GCTCTTC 1 cut(s) 1461
PdmI GAANNNNTTC 1 cut(s) 205
PfeI GAWTC 6 cut(s) 206, 503, 620, 764, 805, 868
PfoI TCCNGGA 2 cut(s) 808, 871
PkrI GCNGC 6 cut(s) 304, 1087, 1190, 1279, 1490, 1528
PleI GAGTC 4 cut(s) 187, 302, 575, 850
PpsI GAGTC 4 cut(s) 187, 302, 575, 850
PpuMI RGGWCCY 1 cut(s) 944
PscI ACATGT 1 cut(s) 1431
Psp5II RGGWCCY 1 cut(s) 944
Psp6I CCWGG 5 cut(s) 808, 871, 991, 1267, 1342
PspFI CCCAGC 1 cut(s) 785
PspGI CCWGG 5 cut(s) 808, 871, 991, 1267, 1342
PspN4I GGNNCC 9 cut(s) 85, 636, 945, 946, 1044, 1153, 1306, 1348, 1426
PspPI GGNCC 4 cut(s) 779, 944, 1340, 1346
PspPPI RGGWCCY 1 cut(s) 944
PstI CTGCAG 1 cut(s) 1282
PstNI CAGNNNCTG 2 cut(s) 350, 506
PsuI RGATCY 4 cut(s) 53, 572, 634, 1298
RsaI GTAC 1 cut(s) 1044
RsaNI GTAC 1 cut(s) 1043
RseI CAYNNNNRTG 5 cut(s) 272, 425, 549, 1052, 1461
SapI GCTCTTC 1 cut(s) 1461
SaqAI TTAA 3 cut(s) 144, 234, 657
SatI GCNGC 6 cut(s) 303, 1086, 1189, 1278, 1489, 1527
Sau3AI GATC 5 cut(s) 53, 572, 634, 1219, 1298
Sau96I GGNCC 4 cut(s) 779, 944, 1340, 1346
SchI GAGTC 4 cut(s) 188, 303, 575, 850
ScrFI CCNGG 5 cut(s) 810, 873, 993, 1269, 1344
SduI GDGCHC 3 cut(s) 169, 521, 1154
SfaNI GCATC 7 cut(s) 250, 337, 455, 580, 807, 816, 1201
SfcI CTRYAG 1 cut(s) 1278
SinI GGWCC 3 cut(s) 779, 944, 1340
SmiMI CAYNNNNRTG 5 cut(s) 272, 425, 549, 1052, 1461
SmlI CTYRAG 3 cut(s) 20, 526, 1161
SmoI CTYRAG 3 cut(s) 20, 526, 1161
SphI GCATGC 1 cut(s) 1460
Sse9I AATT 5 cut(s) 934, 1011, 1062, 1272, 1289
SsiI CCGC 2 cut(s) 1309, 1488
SspI AATATT 2 cut(s) 661, 921
SspMI CTAG 2 cut(s) 99, 131
StyD4I CCNGG 5 cut(s) 808, 871, 991, 1267, 1342
StyI CCWWGG 4 cut(s) 69, 246, 1199, 1322
TaaI ACNGT 7 cut(s) 849, 1001, 1051, 1092, 1388, 1424, 1507
TaiI ACGT 2 cut(s) 498, 701
TasI AATT 5 cut(s) 934, 1011, 1062, 1272, 1289
TauI GCSGC 1 cut(s) 1491
TfiI GAWTC 6 cut(s) 206, 503, 620, 764, 805, 868
Tru1I TTAA 3 cut(s) 144, 234, 657
Tru9I TTAA 3 cut(s) 144, 234, 657
TscAI CASTG 5 cut(s) 216, 427, 1054, 1147, 1393
TseFI GTSAC 3 cut(s) 578, 1138, 1372
TseI GCWGC 5 cut(s) 302, 1085, 1188, 1277, 1526
Tsp45I GTSAC 3 cut(s) 578, 1138, 1372
TspGWI ACGGA 1 cut(s) 448
TspRI CASTG 5 cut(s) 216, 427, 1054, 1147, 1393
VpaK11BI GGWCC 3 cut(s) 779, 944, 1340
XagI CCTNNNNNAGG 1 cut(s) 245
XapI RAATTY 2 cut(s) 1011, 1289
XceI RCATGY 3 cut(s) 1139, 1435, 1460
XcmI CCANNNNNNNNNTGG 3 cut(s) 548, 806, 1320
XmiI GTMKAC 1 cut(s) 1028
XmnI GAANNNNTTC 1 cut(s) 205
XspI CTAG 2 cut(s) 99, 131
Zsp2I ATGCAT 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.