Ninja-family protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G28910 AT4G28910 AT4G28910 |
| fragaria_vesca | FvH4_1g05760 FvH4_1g05760 FvH4_1g05760 |
| malus_domestica | MD02G1058800.v1.1 MD15G1193100.v1.1 |
| prunus_persica | Prupe.7G224200_v2.0.a1 |
| pyrus_communis | pycom02g04760 pycom15g17290 |
| rosa_chinensis | RchiOBHm_Chr2g0091401 |
| rosa_laevigata | RLG00000016221 |
| rosa_roxburghii | Rroxscaffold_2G00150110 |
| rosa_rugosa | Rorug02G0017500 |
| rosa_samantha | Rh2AG062500 Rh2BG061500 Rh2CG063600 Rh2DG062100 |
| rosa_wichuraiana | Rw2G005770 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 811 |
| Acc36I | ACCTGC | 2 cut(s) | 600, 811 |
| Acc65I | GGTACC | 1 cut(s) | 1042 |
| AccB1I | GGYRCC | 2 cut(s) | 83, 1042 |
| AccI | GTMKAC | 1 cut(s) | 1028 |
| AciI | CCGC | 2 cut(s) | 1309, 1488 |
| AclWI | GGATC | 5 cut(s) | 61, 580, 629, 642, 1306 |
| AcsI | RAATTY | 2 cut(s) | 1011, 1289 |
| AcuI | CTGAAG | 2 cut(s) | 528, 1164 |
| AfaI | GTAC | 1 cut(s) | 1044 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 247, 992, 1356, 1487 |
| AflIII | ACRYGT | 1 cut(s) | 1431 |
| AgsI | TTSAA | 3 cut(s) | 283, 377, 624 |
| AjiI | CACGTC | 1 cut(s) | 496 |
| AjnI | CCWGG | 5 cut(s) | 808, 871, 991, 1267, 1342 |
| AleI | CACNNNNGTG | 1 cut(s) | 1052 |
| AluBI | AGCT | 8 cut(s) | 25, 30, 192, 413, 604, 913, 1259, 1542 |
| AluI | AGCT | 8 cut(s) | 25, 30, 192, 413, 604, 913, 1259, 1542 |
| Alw26I | GTCTC | 1 cut(s) | 114 |
| AlwI | GGATC | 5 cut(s) | 61, 580, 629, 642, 1306 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 350, 506 |
| AoxI | GGCC | 3 cut(s) | 249, 796, 1345 |
| ApeKI | GCWGC | 5 cut(s) | 302, 1085, 1188, 1277, 1526 |
| ApoI | RAATTY | 2 cut(s) | 1011, 1289 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1274, 1306 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 205 |
| Asp718I | GGTACC | 1 cut(s) | 1042 |
| AspS9I | GGNCC | 4 cut(s) | 779, 944, 1340, 1346 |
| AsuHPI | GGTGA | 6 cut(s) | 125, 269, 590, 835, 894, 1133 |
| AvaII | GGWCC | 3 cut(s) | 779, 944, 1340 |
| AxyI | CCTNAGG | 1 cut(s) | 219 |
| BamHI | GGATCC | 1 cut(s) | 634 |
| BanI | GGYRCC | 2 cut(s) | 83, 1042 |
| BanII | GRGCYC | 3 cut(s) | 169, 521, 1154 |
| BbsI | GAAGAC | 2 cut(s) | 498, 1179 |
| BbvI | GCAGC | 5 cut(s) | 289, 1072, 1200, 1264, 1513 |
| BccI | CCATC | 5 cut(s) | 464, 545, 807, 1091, 1118 |
| BciT130I | CCWGG | 5 cut(s) | 810, 873, 993, 1269, 1344 |
| BcoDI | GTCTC | 1 cut(s) | 114 |
| BfaI | CTAG | 2 cut(s) | 99, 131 |
| BfmI | CTRYAG | 1 cut(s) | 1278 |
| BfuAI | ACCTGC | 2 cut(s) | 600, 811 |
| BisI | GCNGC | 6 cut(s) | 303, 1086, 1189, 1278, 1489, 1527 |
| BlpI | GCTNAGC | 2 cut(s) | 26, 520 |
| BlsI | GCNGC | 6 cut(s) | 304, 1087, 1190, 1279, 1490, 1528 |
| Bme1390I | CCNGG | 5 cut(s) | 810, 873, 993, 1269, 1344 |
| Bme18I | GGWCC | 3 cut(s) | 779, 944, 1340 |
| BmgBI | CACGTC | 1 cut(s) | 496 |
| BmgT120I | GGNCC | 4 cut(s) | 779, 944, 1340, 1346 |
| BmiI | GGNNCC | 9 cut(s) | 85, 636, 945, 946, 1044, 1153, 1306, 1348, 1426 |
| BmrFI | CCNGG | 5 cut(s) | 810, 873, 993, 1269, 1344 |
| BmsI | GCATC | 7 cut(s) | 250, 337, 455, 580, 807, 816, 1201 |
| BpiI | GAAGAC | 2 cut(s) | 498, 1179 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1139, 1171, 1226, 1258 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 26, 520 |
| BpuEI | CTTGAG | 3 cut(s) | 41, 511, 1146 |
| BsaJI | CCNNGG | 6 cut(s) | 69, 246, 991, 1199, 1322, 1420 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 247, 992, 1356, 1487 |
| Bse1I | ACTGG | 1 cut(s) | 884 |
| Bse21I | CCTNAGG | 1 cut(s) | 219 |
| BseBI | CCWGG | 5 cut(s) | 810, 873, 993, 1269, 1344 |
| BseDI | CCNNGG | 6 cut(s) | 69, 246, 991, 1199, 1322, 1420 |
| BseGI | GGATG | 2 cut(s) | 13, 446 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 247, 992, 1356, 1487 |
| BseMII | CTCAG | 5 cut(s) | 182, 534, 608, 968, 1071 |
| BseNI | ACTGG | 1 cut(s) | 884 |
| BseRI | GAGGAG | 3 cut(s) | 79, 306, 1144 |
| BseXI | GCAGC | 5 cut(s) | 289, 1072, 1200, 1264, 1513 |
| BseYI | CCCAGC | 1 cut(s) | 785 |
| BsgI | GTGCAG | 1 cut(s) | 1071 |
| BshFI | GGCC | 3 cut(s) | 251, 798, 1347 |
| BshNI | GGYRCC | 2 cut(s) | 83, 1042 |
| BslFI | GGGAC | 4 cut(s) | 868, 930, 1420, 1493 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 247, 992, 1356, 1487 |
| BsmAI | GTCTC | 1 cut(s) | 114 |
| BsmFI | GGGAC | 4 cut(s) | 868, 930, 1420, 1493 |
| BsnI | GGCC | 3 cut(s) | 251, 798, 1347 |
| Bsp1286I | GDGCHC | 3 cut(s) | 169, 521, 1154 |
| Bsp143I | GATC | 5 cut(s) | 53, 572, 634, 1219, 1298 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 26, 520 |
| Bsp19I | CCATGG | 1 cut(s) | 1322 |
| BspACI | CCGC | 2 cut(s) | 1309, 1488 |
| BspANI | GGCC | 3 cut(s) | 251, 798, 1347 |
| BspCNI | CTCAG | 5 cut(s) | 181, 533, 607, 967, 1072 |
| BspLI | GGNNCC | 9 cut(s) | 85, 636, 945, 946, 1044, 1153, 1306, 1348, 1426 |
| BspMAI | CTGCAG | 1 cut(s) | 1282 |
| BspMI | ACCTGC | 2 cut(s) | 600, 811 |
| BspPI | GGATC | 5 cut(s) | 61, 580, 629, 642, 1306 |
| BspQI | GCTCTTC | 1 cut(s) | 1461 |
| BspT107I | GGYRCC | 2 cut(s) | 83, 1042 |
| BsrI | ACTGG | 1 cut(s) | 884 |
| BssECI | CCNNGG | 6 cut(s) | 69, 246, 991, 1199, 1322, 1420 |
| BssMI | GATC | 5 cut(s) | 53, 572, 634, 1219, 1298 |
| BssNAI | GTATAC | 1 cut(s) | 1029 |
| BssT1I | CCWWGG | 4 cut(s) | 69, 246, 1199, 1322 |
| Bst1107I | GTATAC | 1 cut(s) | 1029 |
| Bst2UI | CCWGG | 5 cut(s) | 810, 873, 993, 1269, 1344 |
| Bst4CI | ACNGT | 7 cut(s) | 849, 1001, 1051, 1092, 1388, 1424, 1507 |
| Bst6I | CTCTTC | 6 cut(s) | 372, 589, 644, 1140, 1162, 1461 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 826 |
| BstC8I | GCNNGC | 3 cut(s) | 973, 1417, 1458 |
| BstDEI | CTNAG | 8 cut(s) | 26, 168, 219, 520, 594, 954, 1080, 1536 |
| BstDSI | CCRYGG | 2 cut(s) | 1322, 1420 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 245 |
| BstF5I | GGATG | 2 cut(s) | 13, 446 |
| BstKTI | GATC | 5 cut(s) | 56, 575, 637, 1222, 1301 |
| BstMAI | GTCTC | 1 cut(s) | 114 |
| BstMBI | GATC | 5 cut(s) | 53, 572, 634, 1219, 1298 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 652, 795, 826, 1532 |
| BstNI | CCWGG | 5 cut(s) | 810, 873, 993, 1269, 1344 |
| BstNSI | RCATGY | 3 cut(s) | 1139, 1435, 1460 |
| BstSCI | CCNGG | 5 cut(s) | 808, 871, 991, 1267, 1342 |
| BstSFI | CTRYAG | 1 cut(s) | 1278 |
| BstV1I | GCAGC | 5 cut(s) | 289, 1072, 1200, 1264, 1513 |
| BstV2I | GAAGAC | 2 cut(s) | 498, 1179 |
| BstX2I | RGATCY | 4 cut(s) | 53, 572, 634, 1298 |
| BstYI | RGATCY | 4 cut(s) | 53, 572, 634, 1298 |
| BstZ17I | GTATAC | 1 cut(s) | 1029 |
| Bsu36I | CCTNAGG | 1 cut(s) | 219 |
| BsuRI | GGCC | 3 cut(s) | 251, 798, 1347 |
| BtgI | CCRYGG | 2 cut(s) | 1322, 1420 |
| BtrI | CACGTC | 1 cut(s) | 496 |
| BtsCI | GGATG | 2 cut(s) | 13, 446 |
| BtsIMutI | CAGTG | 5 cut(s) | 216, 420, 1047, 1140, 1393 |
| BveI | ACCTGC | 2 cut(s) | 600, 811 |
| Cac8I | GCNNGC | 3 cut(s) | 973, 1417, 1458 |
| CaiI | CAGNNNCTG | 2 cut(s) | 350, 506 |
| Cfr13I | GGNCC | 4 cut(s) | 779, 944, 1340, 1346 |
| Csp6I | GTAC | 1 cut(s) | 1043 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 612, 647 |
| CviQI | GTAC | 1 cut(s) | 1043 |
| DdeI | CTNAG | 8 cut(s) | 26, 168, 219, 520, 594, 954, 1080, 1536 |
| DpnI | GATC | 5 cut(s) | 55, 574, 636, 1221, 1300 |
| DpnII | GATC | 5 cut(s) | 53, 572, 634, 1219, 1298 |
| DraI | TTTAAA | 1 cut(s) | 145 |
| Eam1104I | CTCTTC | 6 cut(s) | 372, 589, 644, 1140, 1162, 1461 |
| EarI | CTCTTC | 6 cut(s) | 372, 589, 644, 1140, 1162, 1461 |
| Eco130I | CCWWGG | 4 cut(s) | 69, 246, 1199, 1322 |
| Eco24I | GRGCYC | 3 cut(s) | 169, 521, 1154 |
| Eco32I | GATATC | 1 cut(s) | 537 |
| Eco47I | GGWCC | 3 cut(s) | 779, 944, 1340 |
| Eco57I | CTGAAG | 2 cut(s) | 528, 1164 |
| Eco81I | CCTNAGG | 1 cut(s) | 219 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 245 |
| EcoO109I | RGGNCCY | 2 cut(s) | 944, 1346 |
| EcoRII | CCWGG | 5 cut(s) | 808, 871, 991, 1267, 1342 |
| EcoRV | GATATC | 1 cut(s) | 537 |
| EcoT14I | CCWWGG | 4 cut(s) | 69, 246, 1199, 1322 |
| EcoT22I | ATGCAT | 1 cut(s) | 432 |
| EcoT38I | GRGCYC | 3 cut(s) | 169, 521, 1154 |
| ErhI | CCWWGG | 4 cut(s) | 69, 246, 1199, 1322 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 138, 170, 212, 244 |
| FaqI | GGGAC | 4 cut(s) | 868, 930, 1420, 1493 |
| FauI | CCCGC | 1 cut(s) | 1316 |
| FblI | GTMKAC | 1 cut(s) | 1028 |
| Fnu4HI | GCNGC | 6 cut(s) | 303, 1086, 1189, 1278, 1489, 1527 |
| FokI | GGATG | 2 cut(s) | 20, 433 |
| FriOI | GRGCYC | 3 cut(s) | 169, 521, 1154 |
| Fsp4HI | GCNGC | 6 cut(s) | 303, 1086, 1189, 1278, 1489, 1527 |
| FspBI | CTAG | 2 cut(s) | 99, 131 |
| GluI | GCNGC | 6 cut(s) | 303, 1086, 1189, 1278, 1489, 1527 |
| GsaI | CCCAGC | 1 cut(s) | 789 |
| HaeIII | GGCC | 3 cut(s) | 251, 798, 1347 |
| HphI | GGTGA | 6 cut(s) | 125, 269, 590, 835, 894, 1133 |
| Hpy166II | GTNNAC | 6 cut(s) | 17, 730, 782, 845, 1004, 1029 |
| Hpy188I | TCNGA | 9 cut(s) | 171, 322, 508, 589, 597, 670, 804, 1081, 1539 |
| Hpy188III | TCNNGA | 3 cut(s) | 757, 1247, 1481 |
| Hpy8I | GTNNAC | 6 cut(s) | 17, 730, 782, 845, 1004, 1029 |
| HpyAV | CCTTC | 3 cut(s) | 104, 754, 1482 |
| HpyCH4III | ACNGT | 7 cut(s) | 849, 1001, 1051, 1092, 1388, 1424, 1507 |
| HpyCH4IV | ACGT | 2 cut(s) | 495, 698 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 652, 795, 826, 1532 |
| HpyF3I | CTNAG | 8 cut(s) | 26, 168, 219, 520, 594, 954, 1080, 1536 |
| HpySE526I | ACGT | 2 cut(s) | 495, 698 |
| KflI | GGGWCCC | 1 cut(s) | 944 |
| KpnI | GGTACC | 1 cut(s) | 1046 |
| Kzo9I | GATC | 5 cut(s) | 53, 572, 634, 1219, 1298 |
| LguI | GCTCTTC | 1 cut(s) | 1461 |
| LmnI | GCTCC | 1 cut(s) | 1157 |
| Lsp1109I | GCAGC | 5 cut(s) | 289, 1072, 1200, 1264, 1513 |
| LweI | GCATC | 7 cut(s) | 250, 337, 455, 580, 807, 816, 1201 |
| MaeI | CTAG | 2 cut(s) | 99, 131 |
| MaeII | ACGT | 2 cut(s) | 495, 698 |
| MaeIII | GTNAC | 5 cut(s) | 460, 578, 995, 1138, 1372 |
| MalI | GATC | 5 cut(s) | 55, 574, 636, 1221, 1300 |
| MboI | GATC | 5 cut(s) | 53, 572, 634, 1219, 1298 |
| MflI | RGATCY | 4 cut(s) | 53, 572, 634, 1298 |
| MhlI | GDGCHC | 3 cut(s) | 169, 521, 1154 |
| MluCI | AATT | 5 cut(s) | 934, 1011, 1062, 1272, 1289 |
| MlyI | GAGTC | 4 cut(s) | 188, 303, 575, 850 |
| MmeI | TCCRAC | 1 cut(s) | 550 |
| Mph1103I | ATGCAT | 1 cut(s) | 432 |
| MroXI | GAANNNNTTC | 1 cut(s) | 205 |
| MseI | TTAA | 3 cut(s) | 144, 234, 657 |
| MslI | CAYNNNNRTG | 5 cut(s) | 272, 425, 549, 1052, 1461 |
| MspR9I | CCNGG | 5 cut(s) | 810, 873, 993, 1269, 1344 |
| MvaI | CCWGG | 5 cut(s) | 810, 873, 993, 1269, 1344 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 652, 795, 826, 1532 |
| NcoI | CCATGG | 1 cut(s) | 1322 |
| NdeII | GATC | 5 cut(s) | 53, 572, 634, 1219, 1298 |
| NlaIV | GGNNCC | 9 cut(s) | 85, 636, 945, 946, 1044, 1153, 1306, 1348, 1426 |
| NmuCI | GTSAC | 3 cut(s) | 578, 1138, 1372 |
| NsiI | ATGCAT | 1 cut(s) | 432 |
| NspI | RCATGY | 3 cut(s) | 1139, 1435, 1460 |
| OliI | CACNNNNGTG | 1 cut(s) | 1052 |
| PaeI | GCATGC | 1 cut(s) | 1460 |
| PaqCI | CACCTGC | 1 cut(s) | 811 |
| PciI | ACATGT | 1 cut(s) | 1431 |
| PciSI | GCTCTTC | 1 cut(s) | 1461 |
| PdmI | GAANNNNTTC | 1 cut(s) | 205 |
| PfeI | GAWTC | 6 cut(s) | 206, 503, 620, 764, 805, 868 |
| PfoI | TCCNGGA | 2 cut(s) | 808, 871 |
| PkrI | GCNGC | 6 cut(s) | 304, 1087, 1190, 1279, 1490, 1528 |
| PleI | GAGTC | 4 cut(s) | 187, 302, 575, 850 |
| PpsI | GAGTC | 4 cut(s) | 187, 302, 575, 850 |
| PpuMI | RGGWCCY | 1 cut(s) | 944 |
| PscI | ACATGT | 1 cut(s) | 1431 |
| Psp5II | RGGWCCY | 1 cut(s) | 944 |
| Psp6I | CCWGG | 5 cut(s) | 808, 871, 991, 1267, 1342 |
| PspFI | CCCAGC | 1 cut(s) | 785 |
| PspGI | CCWGG | 5 cut(s) | 808, 871, 991, 1267, 1342 |
| PspN4I | GGNNCC | 9 cut(s) | 85, 636, 945, 946, 1044, 1153, 1306, 1348, 1426 |
| PspPI | GGNCC | 4 cut(s) | 779, 944, 1340, 1346 |
| PspPPI | RGGWCCY | 1 cut(s) | 944 |
| PstI | CTGCAG | 1 cut(s) | 1282 |
| PstNI | CAGNNNCTG | 2 cut(s) | 350, 506 |
| PsuI | RGATCY | 4 cut(s) | 53, 572, 634, 1298 |
| RsaI | GTAC | 1 cut(s) | 1044 |
| RsaNI | GTAC | 1 cut(s) | 1043 |
| RseI | CAYNNNNRTG | 5 cut(s) | 272, 425, 549, 1052, 1461 |
| SapI | GCTCTTC | 1 cut(s) | 1461 |
| SaqAI | TTAA | 3 cut(s) | 144, 234, 657 |
| SatI | GCNGC | 6 cut(s) | 303, 1086, 1189, 1278, 1489, 1527 |
| Sau3AI | GATC | 5 cut(s) | 53, 572, 634, 1219, 1298 |
| Sau96I | GGNCC | 4 cut(s) | 779, 944, 1340, 1346 |
| SchI | GAGTC | 4 cut(s) | 188, 303, 575, 850 |
| ScrFI | CCNGG | 5 cut(s) | 810, 873, 993, 1269, 1344 |
| SduI | GDGCHC | 3 cut(s) | 169, 521, 1154 |
| SfaNI | GCATC | 7 cut(s) | 250, 337, 455, 580, 807, 816, 1201 |
| SfcI | CTRYAG | 1 cut(s) | 1278 |
| SinI | GGWCC | 3 cut(s) | 779, 944, 1340 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 272, 425, 549, 1052, 1461 |
| SmlI | CTYRAG | 3 cut(s) | 20, 526, 1161 |
| SmoI | CTYRAG | 3 cut(s) | 20, 526, 1161 |
| SphI | GCATGC | 1 cut(s) | 1460 |
| Sse9I | AATT | 5 cut(s) | 934, 1011, 1062, 1272, 1289 |
| SsiI | CCGC | 2 cut(s) | 1309, 1488 |
| SspI | AATATT | 2 cut(s) | 661, 921 |
| SspMI | CTAG | 2 cut(s) | 99, 131 |
| StyD4I | CCNGG | 5 cut(s) | 808, 871, 991, 1267, 1342 |
| StyI | CCWWGG | 4 cut(s) | 69, 246, 1199, 1322 |
| TaaI | ACNGT | 7 cut(s) | 849, 1001, 1051, 1092, 1388, 1424, 1507 |
| TaiI | ACGT | 2 cut(s) | 498, 701 |
| TasI | AATT | 5 cut(s) | 934, 1011, 1062, 1272, 1289 |
| TauI | GCSGC | 1 cut(s) | 1491 |
| TfiI | GAWTC | 6 cut(s) | 206, 503, 620, 764, 805, 868 |
| Tru1I | TTAA | 3 cut(s) | 144, 234, 657 |
| Tru9I | TTAA | 3 cut(s) | 144, 234, 657 |
| TscAI | CASTG | 5 cut(s) | 216, 427, 1054, 1147, 1393 |
| TseFI | GTSAC | 3 cut(s) | 578, 1138, 1372 |
| TseI | GCWGC | 5 cut(s) | 302, 1085, 1188, 1277, 1526 |
| Tsp45I | GTSAC | 3 cut(s) | 578, 1138, 1372 |
| TspGWI | ACGGA | 1 cut(s) | 448 |
| TspRI | CASTG | 5 cut(s) | 216, 427, 1054, 1147, 1393 |
| VpaK11BI | GGWCC | 3 cut(s) | 779, 944, 1340 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 245 |
| XapI | RAATTY | 2 cut(s) | 1011, 1289 |
| XceI | RCATGY | 3 cut(s) | 1139, 1435, 1460 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 548, 806, 1320 |
| XmiI | GTMKAC | 1 cut(s) | 1028 |
| XmnI | GAANNNNTTC | 1 cut(s) | 205 |
| XspI | CTAG | 2 cut(s) | 99, 131 |
| Zsp2I | ATGCAT | 1 cut(s) | 432 |