pycom15g17290

Ninja-family protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
12179843 .. 12181596
1754 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g17290.2

Sequence Viewer

Length: 1509 bp
ATGGAGGATGATAATGGACTTGAACTTAGTTTGGGTCTCTCTTGGGGTGGATCATCTGCCAAAACCAAGGGTAAAAATGGTGCTTCCCCAAATGCTAGAGCAGAAGAAGGAGATAGAGGCAACAAACTAGCGGATGATTTTAAGGACTTTCTTCATGGTGCGGCTCAAAAACAAGAATCTAGTAGTAGCTCTCAAAGAAGTGATTCAGTGAAACCTAAGGAAAACTTCTTCAATGACCTTTCCAAGTCCAGTGTTGATGCAGATGCATCAATGAACTTGAACGGTAGAGGAGTCTGGGTTCCAAACAATAACAAGTCTGATGAAACAGAGGAGGAAAAACGGACTGAGGCTAGTAATAAGCGCAAGAATTTGTTTGATGAGATGAACCATCAAAAGAAGCATGAGAGAGAAACTCATTACTCTGATATGCATGACAAGACGAGAGCATCACACATTTCCGTTACAGAAGATGGCTCAACTGCTGAAAATGAAGACGTGGCAGATTCTGAAGTGGAGGGTTCATCCTCAGTGCCGATTTCTCAACATGCTGAGGGCGTCAAGCGATTTGTTGGATCTGGTGACTCTTCTGATGCTCAGAAGGAAGTTCGAAGGTTTGCTGATTCCAATGTTGTCGACCTAAATGGGCAGAAGAGGTTTAATATCTCATCAGAAAATGAATATAAGCTTGGGAATATGGCGTATGGCAGTCCCTTCTCACTGCAATCAGTAAACATGATGAACATACCTTATTCTCTCCCGACGAAGGAATCTAATTCAGTTGGTGCAACCACCACATCAGGACATCCAATGCATGGGATGATGCAGTCGATGCCTACTGTTACTGGTGAACGAACAGGGACTCAACCTGTGAATCCTGGAAACTTGCCAGTTATGTTTGGCTATTCACCTGTCCAGCTCCCAATGTTGGATAAAGATAATTCCTGGGGTGCAATTCCTCATGCTCAACAATTCCATCCTGCCTATGCAGGCAGAAATCCACCAAACTCAGCTATAATGCAAGTCGTTTCACATAATTCACCTGATGTGGCACAATATGATGGGAGGATGTTAGAACGGGCGAGAGGTGATGGCAAACAGAATGTCACTGAAGAGGGCGCATCTTCTCAGGTAGAAGAAGACACAAAAGTAAGTAGCGCGAACCTCGGGATGAAAGATGCACCTGGCCGCCCAACGGCAGAGGACTTATCTCTTGATTTTTCAGCTATAAAGCCAGGTATTGCTGCAGACATAAAATTTGGGGGATCTGGTTCATGCCCGAACCTACCATGGGTTTCTACCAAAGGCCAAGGGCCAAATGGTAAGACAATTTCGGGTGTAACTTACCGATACAGCACAAACCAAATAAAGATAGTTTGTGCTTGCCACGGCTTGCACATGTCCCCTGAAGAGTTTGTTCGTCATGCAAGCGACGAGCCATCTAATCCCGAAAGTGGCACTGGTTTGGCAGCATTTCCTAATGGCAATCCTTCTGCCCCAGCTCATACCTAA

Protein Analysis

503

Amino Acids

54.0

Weight (kDa)

5.43

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010854)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 812
AccI GTMKAC 1 cut(s) 633
AccII CGCG 1 cut(s) 1157
AciI CCGC 3 cut(s) 131, 161, 1186
AclWI GGATC 3 cut(s) 58, 580, 1270
AcoI YGGCCR 1 cut(s) 1183
AcsI RAATTY 2 cut(s) 367, 1253
AcuI CTGAAG 3 cut(s) 528, 1128, 1425
AcyI GRCGYC 1 cut(s) 555
AfiI CCNNNNNNNGG 6 cut(s) 763, 812, 925, 1192, 1288, 1451
AflIII ACRYGT 1 cut(s) 1395
AgsI TTSAA 3 cut(s) 23, 232, 280
AjiI CACGTC 1 cut(s) 496
AjnI CCWGG 4 cut(s) 874, 941, 1180, 1231
AjuI GAANNNNNNNTTGG 2 cut(s) 669, 701
AloI GAACNNNNNNTCC 2 cut(s) 282, 314
AluBI AGCT 6 cut(s) 189, 685, 916, 1010, 1223, 1499
AluI AGCT 6 cut(s) 189, 685, 916, 1010, 1223, 1499
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 3 cut(s) 58, 580, 1270
AlwNI CAGNNNCTG 1 cut(s) 506
Ama87I CYCGRG 1 cut(s) 1163
AoxI GGCC 3 cut(s) 1183, 1303, 1310
ApeKI GCWGC 2 cut(s) 1241, 1466
ApoI RAATTY 2 cut(s) 367, 1253
ArsI GACNNNNNNTTYG 4 cut(s) 1086, 1118, 1238, 1270
Asp700I GAANNNNTTC 1 cut(s) 202
AspLEI GCGC 3 cut(s) 363, 1118, 1157
AspS9I GGNCC 1 cut(s) 1310
AsuHPI GGTGA 5 cut(s) 590, 857, 897, 1029, 1097
AsuII TTCGAA 1 cut(s) 607
AvaI CYCGRG 1 cut(s) 1163
AxyI CCTNAGG 1 cut(s) 216
BbsI GAAGAC 2 cut(s) 498, 1143
BbvCI CCTCAGC 1 cut(s) 549
BbvI GCAGC 2 cut(s) 1228, 1478
BccI CCATC 6 cut(s) 396, 464, 981, 1052, 1082, 1444
BceAI ACGGC 2 cut(s) 1209, 1402
BciT130I CCWGG 4 cut(s) 876, 943, 1182, 1233
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 4 cut(s) 96, 128, 180, 351
BfmI CTRYAG 1 cut(s) 1242
BisI GCNGC 4 cut(s) 162, 1186, 1242, 1467
BlsI GCNGC 4 cut(s) 163, 1187, 1243, 1468
Bme1390I CCNGG 4 cut(s) 876, 943, 1182, 1233
BmeT110I CYCGRG 1 cut(s) 1163
BmgBI CACGTC 1 cut(s) 496
BmgT120I GGNCC 1 cut(s) 1310
BmiI GGNNCC 1 cut(s) 300
BmrFI CCNGG 4 cut(s) 876, 943, 1182, 1233
BmsI GCATC 9 cut(s) 247, 253, 275, 455, 580, 810, 819, 1127, 1165
BpiI GAAGAC 2 cut(s) 498, 1143
BplI GAGNNNNNCTC 2 cut(s) 397, 429
Bpu10I CCTNAGC 1 cut(s) 549
Bpu14I TTCGAA 1 cut(s) 607
BsaHI GRCGYC 1 cut(s) 555
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 6 cut(s) 66, 942, 1162, 1286, 1306, 1384
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 6 cut(s) 763, 812, 925, 1192, 1288, 1451
Bse1I ACTGG 4 cut(s) 249, 847, 887, 1462
Bse21I CCTNAGG 1 cut(s) 216
BseBI CCWGG 4 cut(s) 876, 943, 1182, 1233
BseDI CCNNGG 6 cut(s) 66, 942, 1162, 1286, 1306, 1384
BseGI GGATG 8 cut(s) 13, 139, 521, 802, 822, 973, 1071, 1173
BseLI CCNNNNNNNGG 6 cut(s) 763, 812, 925, 1192, 1288, 1451
BseMII CTCAG 6 cut(s) 336, 540, 540, 608, 1020, 1139
BseNI ACTGG 4 cut(s) 249, 847, 887, 1462
BseRI GAGGAG 2 cut(s) 303, 344
BseXI GCAGC 2 cut(s) 1228, 1478
BseYI CCCAGC 1 cut(s) 1495
Bsh1236I CGCG 1 cut(s) 1157
BshFI GGCC 3 cut(s) 1185, 1305, 1312
BsiHKCI CYCGRG 1 cut(s) 1163
BslFI GGGAC 3 cut(s) 693, 871, 1384
BslI CCNNNNNNNGG 6 cut(s) 763, 812, 925, 1192, 1288, 1451
BsmAI GTCTC 1 cut(s) 41
BsmFI GGGAC 3 cut(s) 693, 871, 1384
BsnI GGCC 3 cut(s) 1185, 1305, 1312
Bso31I GGTCTC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 1163
Bsp119I TTCGAA 1 cut(s) 607
Bsp143I GATC 3 cut(s) 50, 572, 1262
Bsp19I CCATGG 1 cut(s) 1286
BspACI CCGC 3 cut(s) 131, 161, 1186
BspANI GGCC 3 cut(s) 1185, 1305, 1312
BspCNI CTCAG 6 cut(s) 337, 539, 541, 607, 1019, 1138
BspFNI CGCG 1 cut(s) 1157
BspLI GGNNCC 1 cut(s) 300
BspMAI CTGCAG 1 cut(s) 1246
BspPI GGATC 3 cut(s) 58, 580, 1270
BspT104I TTCGAA 1 cut(s) 607
BspTNI GGTCTC 1 cut(s) 41
BsrI ACTGG 4 cut(s) 249, 847, 887, 1462
BssECI CCNNGG 6 cut(s) 66, 942, 1162, 1286, 1306, 1384
BssMI GATC 3 cut(s) 50, 572, 1262
BssNI GRCGYC 1 cut(s) 555
BssT1I CCWWGG 3 cut(s) 66, 1286, 1306
Bst2UI CCWGG 4 cut(s) 876, 943, 1182, 1233
Bst4CI ACNGT 2 cut(s) 284, 838
Bst6I CTCTTC 4 cut(s) 589, 644, 1104, 1401
BstACI GRCGYC 1 cut(s) 555
BstAPI GCANNNNNTGC 1 cut(s) 829
BstBI TTCGAA 1 cut(s) 607
BstC8I GCNNGC 4 cut(s) 988, 1381, 1391, 1426
BstDEI CTNAG 8 cut(s) 26, 216, 345, 526, 549, 594, 1006, 1125
BstDSI CCRYGG 2 cut(s) 1286, 1384
BstF5I GGATG 8 cut(s) 13, 139, 521, 802, 822, 973, 1071, 1173
BstFNI CGCG 1 cut(s) 1157
BstHHI GCGC 3 cut(s) 363, 1118, 1157
BstKTI GATC 3 cut(s) 53, 575, 1265
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 3 cut(s) 50, 572, 1262
BstMWI GCNNNNNNNGC 1 cut(s) 829
BstNI CCWGG 4 cut(s) 876, 943, 1182, 1233
BstNSI RCATGY 2 cut(s) 548, 1399
BstSCI CCNGG 4 cut(s) 874, 941, 1180, 1231
BstSFI CTRYAG 1 cut(s) 1242
BstUI CGCG 1 cut(s) 1157
BstV1I GCAGC 2 cut(s) 1228, 1478
BstV2I GAAGAC 2 cut(s) 498, 1143
BstX2I RGATCY 2 cut(s) 572, 1262
BstYI RGATCY 2 cut(s) 572, 1262
Bsu36I CCTNAGG 1 cut(s) 216
BsuRI GGCC 3 cut(s) 1185, 1305, 1312
BtgI CCRYGG 2 cut(s) 1286, 1384
BtrI CACGTC 1 cut(s) 496
BtsCI GGATG 8 cut(s) 13, 139, 521, 802, 822, 973, 1071, 1173
BtsI GCAGTG 1 cut(s) 716
BtsIMutI CAGTG 6 cut(s) 213, 256, 534, 716, 1104, 1455
Cac8I GCNNGC 4 cut(s) 988, 1381, 1391, 1426
CaiI CAGNNNCTG 1 cut(s) 506
CfoI GCGC 3 cut(s) 363, 1118, 1157
Cfr13I GGNCC 1 cut(s) 1310
CseI GACGC 1 cut(s) 544
DdeI CTNAG 8 cut(s) 26, 216, 345, 526, 549, 594, 1006, 1125
DpnI GATC 3 cut(s) 52, 574, 1264
DpnII GATC 3 cut(s) 50, 572, 1262
EaeI YGGCCR 1 cut(s) 1183
Eam1104I CTCTTC 4 cut(s) 589, 644, 1104, 1401
EarI CTCTTC 4 cut(s) 589, 644, 1104, 1401
Eco130I CCWWGG 3 cut(s) 66, 1286, 1306
Eco31I GGTCTC 1 cut(s) 41
Eco57I CTGAAG 3 cut(s) 528, 1128, 1425
Eco81I CCTNAGG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 1163
EcoRII CCWGG 4 cut(s) 874, 941, 1180, 1231
EcoT14I CCWWGG 3 cut(s) 66, 1286, 1306
EcoT22I ATGCAT 3 cut(s) 268, 432, 813
ErhI CCWWGG 3 cut(s) 66, 1286, 1306
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FaqI GGGAC 3 cut(s) 693, 871, 1384
FblI GTMKAC 1 cut(s) 633
Fnu4HI GCNGC 4 cut(s) 162, 1186, 1242, 1467
FokI GGATG 8 cut(s) 20, 146, 508, 789, 829, 960, 1078, 1180
Fsp4HI GCNGC 4 cut(s) 162, 1186, 1242, 1467
FspBI CTAG 4 cut(s) 96, 128, 180, 351
GlaI GCGC 3 cut(s) 362, 1117, 1156
GluI GCNGC 4 cut(s) 162, 1186, 1242, 1467
GsaI CCCAGC 1 cut(s) 1499
HaeIII GGCC 3 cut(s) 1185, 1305, 1312
HgaI GACGC 1 cut(s) 544
HhaI GCGC 3 cut(s) 363, 1118, 1157
Hin1I GRCGYC 1 cut(s) 555
Hin6I GCGC 3 cut(s) 361, 1116, 1155
HinP1I GCGC 3 cut(s) 361, 1116, 1155
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HindIII AAGCTT 1 cut(s) 683
HinfI GANTC 9 cut(s) 176, 203, 291, 503, 581, 620, 767, 859, 871
HphI GGTGA 5 cut(s) 590, 857, 897, 1029, 1097
Hpy166II GTNNAC 3 cut(s) 634, 730, 848
Hpy188I TCNGA 6 cut(s) 319, 424, 508, 589, 597, 670
Hpy188III TCNNGA 5 cut(s) 757, 798, 1165, 1211, 1445
Hpy8I GTNNAC 3 cut(s) 634, 730, 848
Hpy99I CGWCG 2 cut(s) 763, 1433
HpyAV CCTTC 6 cut(s) 101, 592, 603, 721, 757, 1497
HpyCH4III ACNGT 2 cut(s) 284, 838
HpyCH4IV ACGT 1 cut(s) 495
HpyF10VI GCNNNNNNNGC 1 cut(s) 829
HpyF3I CTNAG 8 cut(s) 26, 216, 345, 526, 549, 594, 1006, 1125
HpySE526I ACGT 1 cut(s) 495
Hsp92I GRCGYC 1 cut(s) 555
HspAI GCGC 3 cut(s) 361, 1116, 1155
Kzo9I GATC 3 cut(s) 50, 572, 1262
LmnI GCTCC 1 cut(s) 921
Lsp1109I GCAGC 2 cut(s) 1228, 1478
LweI GCATC 9 cut(s) 247, 253, 275, 455, 580, 810, 819, 1127, 1165
MaeI CTAG 4 cut(s) 96, 128, 180, 351
MaeII ACGT 1 cut(s) 495
MaeIII GTNAC 5 cut(s) 460, 578, 838, 1102, 1336
MalI GATC 3 cut(s) 52, 574, 1264
MboI GATC 3 cut(s) 50, 572, 1262
MflI RGATCY 2 cut(s) 572, 1262
MluCI AATT 8 cut(s) 367, 772, 937, 951, 968, 1033, 1253, 1326
MlyI GAGTC 3 cut(s) 300, 575, 853
MmeI TCCRAC 2 cut(s) 550, 906
Mph1103I ATGCAT 3 cut(s) 268, 432, 813
MroXI GAANNNNTTC 1 cut(s) 202
MseI TTAA 2 cut(s) 141, 657
MspR9I CCNGG 4 cut(s) 876, 943, 1182, 1233
MvaI CCWGG 4 cut(s) 876, 943, 1182, 1233
MvnI CGCG 1 cut(s) 1157
MwoI GCNNNNNNNGC 1 cut(s) 829
NcoI CCATGG 1 cut(s) 1286
NdeII GATC 3 cut(s) 50, 572, 1262
NlaIV GGNNCC 1 cut(s) 300
NmuCI GTSAC 2 cut(s) 578, 1102
NsiI ATGCAT 3 cut(s) 268, 432, 813
NspI RCATGY 2 cut(s) 548, 1399
NspV TTCGAA 1 cut(s) 607
PciI ACATGT 1 cut(s) 1395
PdmI GAANNNNTTC 1 cut(s) 202
PfeI GAWTC 6 cut(s) 176, 203, 503, 620, 767, 871
PflMI CCANNNNNTGG 1 cut(s) 812
PfoI TCCNGGA 1 cut(s) 874
PkrI GCNGC 4 cut(s) 163, 1187, 1243, 1468
PleI GAGTC 3 cut(s) 299, 575, 853
PpsI GAGTC 3 cut(s) 299, 575, 853
PscI ACATGT 1 cut(s) 1395
Psp6I CCWGG 4 cut(s) 874, 941, 1180, 1231
PspFI CCCAGC 1 cut(s) 1495
PspGI CCWGG 4 cut(s) 874, 941, 1180, 1231
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 1 cut(s) 1310
PstI CTGCAG 1 cut(s) 1246
PstNI CAGNNNCTG 1 cut(s) 506
PsuI RGATCY 2 cut(s) 572, 1262
SalI GTCGAC 1 cut(s) 632
SaqAI TTAA 2 cut(s) 141, 657
SatI GCNGC 4 cut(s) 162, 1186, 1242, 1467
Sau3AI GATC 3 cut(s) 50, 572, 1262
Sau96I GGNCC 1 cut(s) 1310
SchI GAGTC 3 cut(s) 300, 575, 853
ScrFI CCNGG 4 cut(s) 876, 943, 1182, 1233
SfaNI GCATC 9 cut(s) 247, 253, 275, 455, 580, 810, 819, 1127, 1165
SfcI CTRYAG 1 cut(s) 1242
SfuI TTCGAA 1 cut(s) 607
Sse9I AATT 8 cut(s) 367, 772, 937, 951, 968, 1033, 1253, 1326
SsiI CCGC 3 cut(s) 131, 161, 1186
SspMI CTAG 4 cut(s) 96, 128, 180, 351
StyD4I CCNGG 4 cut(s) 874, 941, 1180, 1231
StyI CCWWGG 3 cut(s) 66, 1286, 1306
TaaI ACNGT 2 cut(s) 284, 838
TaiI ACGT 1 cut(s) 498
TaqI TCGA 3 cut(s) 607, 633, 827
TasI AATT 8 cut(s) 367, 772, 937, 951, 968, 1033, 1253, 1326
TauI GCSGC 2 cut(s) 164, 1188
TfiI GAWTC 6 cut(s) 176, 203, 503, 620, 767, 871
Tru1I TTAA 2 cut(s) 141, 657
Tru9I TTAA 2 cut(s) 141, 657
TscAI CASTG 6 cut(s) 213, 256, 534, 723, 1111, 1462
TseFI GTSAC 2 cut(s) 578, 1102
TseI GCWGC 2 cut(s) 1241, 1466
Tsp45I GTSAC 2 cut(s) 578, 1102
TspGWI ACGGA 2 cut(s) 355, 448
TspRI CASTG 6 cut(s) 213, 256, 534, 723, 1111, 1462
Van91I CCANNNNNTGG 1 cut(s) 812
XapI RAATTY 2 cut(s) 367, 1253
XceI RCATGY 2 cut(s) 548, 1399
XcmI CCANNNNNNNNNTGG 1 cut(s) 1313
XmiI GTMKAC 1 cut(s) 633
XmnI GAANNNNTTC 1 cut(s) 202
XspI CTAG 4 cut(s) 96, 128, 180, 351
Zsp2I ATGCAT 3 cut(s) 268, 432, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.