Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010854

Physical Location & Seq

Genomic Coordinates Reverse (-)

3089240 .. 3090714

Gene Structure 1475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g04760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAACCATCAAAAGAAGCATGAGAGAGAAGCTCATTACTCTGATATGCATGACAAGACAAGAGCATCACACATTTCCGTTACAGAAGATGGCTCAACTGCGGAAAATGAAGACGTGGCAGATTCTGAAGTGGAGGGTTCATCCTCAGTGCCAATTTCTCAACATGTTGAGGGGGCCAAGCGATTTGTTCGATCTGGTGACTCTTCTGATGCTCAGAAGGAAGTTTGCAGGTTTGCTGATTCCAAGGTTGTGGACCTAAATGGACAGAAGGGGTTCAATATCTCATCAGAAAATGAATACAAGCTTGGGAATATGGCGTATGGGAGTCCATTCTCAGTGCAATCAGTAAAGATGATGAACATGCCTTATTCTCTCCCGACAAAGGAATCTAATTCAGTTGGTGCGACCACCACATCAGGACATCCAATGCATGGGATGATGCAGGCGATGCCTACGGTTACTGGTGAGCGAACAGGGACTCAACCTGTGAATCCTAAAAACTTGCCAGTTATGTTTGGCTATTCACCTGTCCAGCTCCCAATGTTGGATAAAGATAATGCCTGGGGTGCGATTCCTCATACTCAACAATTCCATCCTGCCTATGCTGGCAGAAATCCTCCAAACTCAGCTATGATGCTTGTCGCTTCAAATAATTCATCTGATATTGCACAATATGATGGGAGGATGTTAGAACGGGCGAGAGGTGATGGCAAAAAGAATGTCACTGAAGAGGATGCATCTTCTCAGGCAGAAGAAGACACAAAAATAAGCAGCGCGAACCTCAGGATGAAAGAGGTACCTGACCGCCCAACGGCAGAGGACTTATCTCTTAATTTTTCATCTATAAAGCCAGGTATTGCTGCAGACATAAAATTTGAGGGATCTGGTTCCTCCCCGAATCTGCCATGGGTTTCTACCAAAGGTCAAGGCCCAAATGGTAAGACAATTTCTGGTGTAACTTACCGATACAGCGCAAACCAAATCAGAATAGTTTGTGCTTGCCATGGCTTGCACATGTCCCCTGAAGAGTTTGTTCGTCATGCAAGCGAAGAGCCTTCTAATCCAGAAAGCGGCACTGGTTTGGCAACATTTCCAAATGGCAATCCCGCTGCCTCGGCTCAGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EAR Jas

Protein Analysis

376

Amino Acids

40.47

Weight (kDa)

5.73

Isoelectric Point (pI)

46.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28910 AT4G28910 AT4G28910
fragaria_vesca	FvH4_1g05760 FvH4_1g05760 FvH4_1g05760
malus_domestica	MD02G1058800.v1.1 MD15G1193100.v1.1
prunus_persica	Prupe.7G224200_v2.0.a1
pyrus_communis	pycom02g04760 pycom15g17290
rosa_chinensis	RchiOBHm_Chr2g0091401
rosa_laevigata	RLG00000016221
rosa_roxburghii	Rroxscaffold_2G00150110
rosa_rugosa	Rorug02G0017500
rosa_samantha	Rh2AG062500 Rh2BG061500 Rh2CG063600 Rh2DG062100
rosa_wichuraiana	Rw2G005770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	219
Acc65I	GGTACC	1 cut(s)	796
AccB1I	GGYRCC	1 cut(s)	796
AccB7I	CCANNNNNTGG	1 cut(s)	431
AccII	CGCG	1 cut(s)	776
AciI	CCGC	4 cut(s)	101, 805, 1071, 1107
AclWI	GGATC	1 cut(s)	889
AcsI	RAATTY	1 cut(s)	872
AcuI	CTGAAG	3 cut(s)	147, 747, 1044
AfaI	GTAC	1 cut(s)	798
AfiI	CCNNNNNNNGG	5 cut(s)	382, 431, 544, 811, 1070
AflIII	ACRYGT	2 cut(s)	163, 1014
AgsI	TTSAA	2 cut(s)	277, 648
AjiI	CACGTC	1 cut(s)	115
AjnI	CCWGG	2 cut(s)	560, 850
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	4 cut(s)	32, 304, 535, 629
AluI	AGCT	4 cut(s)	32, 304, 535, 629
AlwI	GGATC	1 cut(s)	889
AlwNI	CAGNNNCTG	1 cut(s)	125
AoxI	GGCC	2 cut(s)	174, 928
ApeKI	GCWGC	3 cut(s)	771, 860, 1109
ApoI	RAATTY	1 cut(s)	872
ArsI	GACNNNNNNTTYG	4 cut(s)	705, 737, 857, 889
Asp700I	GAANNNNTTC	1 cut(s)	272
Asp718I	GGTACC	1 cut(s)	796
AspLEI	GCGC	2 cut(s)	776, 974
AspS9I	GGNCC	3 cut(s)	174, 253, 929
AsuHPI	GGTGA	4 cut(s)	209, 476, 516, 716
AvaII	GGWCC	1 cut(s)	253
AxyI	CCTNAGG	1 cut(s)	782
BanI	GGYRCC	1 cut(s)	796
BbsI	GAAGAC	2 cut(s)	117, 762
BbvI	GCAGC	3 cut(s)	783, 847, 1096
BccI	CCATC	5 cut(s)	15, 83, 600, 671, 701
BceAI	ACGGC	1 cut(s)	828
BciT130I	CCWGG	2 cut(s)	562, 852
BfmI	CTRYAG	1 cut(s)	861
BfuAI	ACCTGC	1 cut(s)	219
BisI	GCNGC	4 cut(s)	772, 861, 1072, 1110
BlsI	GCNGC	4 cut(s)	773, 862, 1073, 1111
Bme1390I	CCNGG	2 cut(s)	562, 852
Bme18I	GGWCC	1 cut(s)	253
BmgBI	CACGTC	1 cut(s)	115
BmgT120I	GGNCC	3 cut(s)	174, 253, 929
BmiI	GGNNCC	3 cut(s)	175, 798, 889
BmrFI	CCNGG	2 cut(s)	562, 852
BmsI	GCATC	7 cut(s)	74, 199, 429, 438, 624, 724, 746
BpiI	GAAGAC	2 cut(s)	117, 762
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
BsaJI	CCNNGG	5 cut(s)	243, 561, 905, 1003, 1113
Bsc4I	CCNNNNNNNGG	5 cut(s)	382, 431, 544, 811, 1070
Bse1I	ACTGG	3 cut(s)	466, 506, 1081
Bse21I	CCTNAGG	1 cut(s)	782
BseBI	CCWGG	2 cut(s)	562, 852
BseDI	CCNNGG	5 cut(s)	243, 561, 905, 1003, 1113
BseGI	GGATG	7 cut(s)	140, 421, 441, 592, 690, 739, 792
BseLI	CCNNNNNNNGG	5 cut(s)	382, 431, 544, 811, 1070
BseMII	CTCAG	6 cut(s)	159, 227, 348, 639, 758, 796
BseNI	ACTGG	3 cut(s)	466, 506, 1081
BseXI	GCAGC	3 cut(s)	783, 847, 1096
Bsh1236I	CGCG	1 cut(s)	776
BshFI	GGCC	2 cut(s)	176, 930
BshNI	GGYRCC	1 cut(s)	796
BslFI	GGGAC	2 cut(s)	490, 1003
BslI	CCNNNNNNNGG	5 cut(s)	382, 431, 544, 811, 1070
BsmFI	GGGAC	2 cut(s)	490, 1003
BsnI	GGCC	2 cut(s)	176, 930
Bsp143I	GATC	2 cut(s)	191, 881
Bsp19I	CCATGG	2 cut(s)	905, 1003
BspACI	CCGC	4 cut(s)	101, 805, 1071, 1107
BspANI	GGCC	2 cut(s)	176, 930
BspCNI	CTCAG	6 cut(s)	158, 226, 347, 638, 757, 795
BspFNI	CGCG	1 cut(s)	776
BspLI	GGNNCC	3 cut(s)	175, 798, 889
BspMAI	CTGCAG	1 cut(s)	865
BspMI	ACCTGC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	889
BspQI	GCTCTTC	1 cut(s)	1044
BspT107I	GGYRCC	1 cut(s)	796
BsrI	ACTGG	3 cut(s)	466, 506, 1081
BssECI	CCNNGG	5 cut(s)	243, 561, 905, 1003, 1113
BssMI	GATC	2 cut(s)	191, 881
BssT1I	CCWWGG	3 cut(s)	243, 905, 1003
Bst2UI	CCWGG	2 cut(s)	562, 852
Bst4CI	ACNGT	1 cut(s)	457
Bst6I	CTCTTC	4 cut(s)	208, 723, 1020, 1044
BstAPI	GCANNNNNTGC	1 cut(s)	448
BstC8I	GCNNGC	5 cut(s)	444, 607, 1000, 1010, 1045
BstDEI	CTNAG	7 cut(s)	145, 213, 334, 625, 744, 782, 1119
BstDSI	CCRYGG	2 cut(s)	905, 1003
BstF5I	GGATG	7 cut(s)	140, 421, 441, 592, 690, 739, 792
BstFNI	CGCG	1 cut(s)	776
BstHHI	GCGC	2 cut(s)	776, 974
BstKTI	GATC	2 cut(s)	194, 884
BstMBI	GATC	2 cut(s)	191, 881
BstMWI	GCNNNNNNNGC	3 cut(s)	448, 566, 1115
BstNI	CCWGG	2 cut(s)	562, 852
BstNSI	RCATGY	3 cut(s)	167, 364, 1018
BstSCI	CCNGG	2 cut(s)	560, 850
BstSFI	CTRYAG	1 cut(s)	861
BstUI	CGCG	1 cut(s)	776
BstV1I	GCAGC	3 cut(s)	783, 847, 1096
BstV2I	GAAGAC	2 cut(s)	117, 762
BstX2I	RGATCY	1 cut(s)	881
BstXI	CCANNNNNNTGG	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	881
Bsu36I	CCTNAGG	1 cut(s)	782
BsuRI	GGCC	2 cut(s)	176, 930
BtgI	CCRYGG	2 cut(s)	905, 1003
BtgZI	GCGATG	1 cut(s)	461
BtrI	CACGTC	1 cut(s)	115
BtsCI	GGATG	7 cut(s)	140, 421, 441, 592, 690, 739, 792
BtsIMutI	CAGTG	4 cut(s)	153, 342, 723, 1074
BveI	ACCTGC	1 cut(s)	219
Cac8I	GCNNGC	5 cut(s)	444, 607, 1000, 1010, 1045
CaiI	CAGNNNCTG	1 cut(s)	125
CfoI	GCGC	2 cut(s)	776, 974
Cfr13I	GGNCC	3 cut(s)	174, 253, 929
Csp6I	GTAC	1 cut(s)	797
CviAII	CATG	9 cut(s)	20, 50, 164, 361, 431, 906, 1004, 1015, 1040
CviQI	GTAC	1 cut(s)	797
DdeI	CTNAG	7 cut(s)	145, 213, 334, 625, 744, 782, 1119
DpnI	GATC	2 cut(s)	193, 883
DpnII	GATC	2 cut(s)	191, 881
Eam1104I	CTCTTC	4 cut(s)	208, 723, 1020, 1044
EarI	CTCTTC	4 cut(s)	208, 723, 1020, 1044
Eco130I	CCWWGG	3 cut(s)	243, 905, 1003
Eco47I	GGWCC	1 cut(s)	253
Eco57I	CTGAAG	3 cut(s)	147, 747, 1044
Eco81I	CCTNAGG	1 cut(s)	782
EcoRII	CCWGG	2 cut(s)	560, 850
EcoT14I	CCWWGG	3 cut(s)	243, 905, 1003
EcoT22I	ATGCAT	3 cut(s)	51, 432, 739
ErhI	CCWWGG	3 cut(s)	243, 905, 1003
FaeI	CATG	9 cut(s)	23, 53, 167, 364, 434, 909, 1007, 1018, 1043
FaqI	GGGAC	2 cut(s)	490, 1003
FatI	CATG	9 cut(s)	19, 49, 163, 360, 430, 905, 1003, 1014, 1039
FauI	CCCGC	1 cut(s)	1114
Fnu4HI	GCNGC	4 cut(s)	772, 861, 1072, 1110
FokI	GGATG	7 cut(s)	127, 408, 448, 579, 697, 746, 799
Fsp4HI	GCNGC	4 cut(s)	772, 861, 1072, 1110
GlaI	GCGC	2 cut(s)	775, 973
GluI	GCNGC	4 cut(s)	772, 861, 1072, 1110
HaeIII	GGCC	2 cut(s)	176, 930
HhaI	GCGC	2 cut(s)	776, 974
Hin1II	CATG	9 cut(s)	23, 53, 167, 364, 434, 909, 1007, 1018, 1043
Hin6I	GCGC	2 cut(s)	774, 972
HinP1I	GCGC	2 cut(s)	774, 972
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	9 cut(s)	122, 200, 239, 325, 386, 478, 490, 571, 898
HphI	GGTGA	4 cut(s)	209, 476, 516, 716
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	8 cut(s)	43, 127, 208, 216, 289, 661, 986, 1122
Hpy188III	TCNNGA	4 cut(s)	376, 417, 784, 1064
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	3 cut(s)	211, 262, 1065
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4IV	ACGT	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	3 cut(s)	448, 566, 1115
HpyF3I	CTNAG	7 cut(s)	145, 213, 334, 625, 744, 782, 1119
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	9 cut(s)	23, 53, 167, 364, 434, 909, 1007, 1018, 1043
HspAI	GCGC	2 cut(s)	774, 972
KpnI	GGTACC	1 cut(s)	800
Kzo9I	GATC	2 cut(s)	191, 881
LguI	GCTCTTC	1 cut(s)	1044
LmnI	GCTCC	1 cut(s)	540
Lsp1109I	GCAGC	3 cut(s)	783, 847, 1096
LweI	GCATC	7 cut(s)	74, 199, 429, 438, 624, 724, 746
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	5 cut(s)	79, 197, 457, 721, 955
MalI	GATC	2 cut(s)	193, 883
MboI	GATC	2 cut(s)	191, 881
MboII	GAAGA	9 cut(s)	98, 122, 195, 732, 740, 764, 767, 1037, 1061
MflI	RGATCY	1 cut(s)	881
MluCI	AATT	7 cut(s)	153, 391, 587, 652, 832, 872, 945
MlyI	GAGTC	3 cut(s)	194, 334, 472
MmeI	TCCRAC	1 cut(s)	525
Mph1103I	ATGCAT	3 cut(s)	51, 432, 739
MroXI	GAANNNNTTC	1 cut(s)	272
MseI	TTAA	1 cut(s)	831
MspA1I	CMGCKG	1 cut(s)	1109
MspR9I	CCNGG	2 cut(s)	562, 852
MvaI	CCWGG	2 cut(s)	562, 852
MvnI	CGCG	1 cut(s)	776
MwoI	GCNNNNNNNGC	3 cut(s)	448, 566, 1115
NcoI	CCATGG	2 cut(s)	905, 1003
NdeII	GATC	2 cut(s)	191, 881
NlaIII	CATG	9 cut(s)	23, 53, 167, 364, 434, 909, 1007, 1018, 1043
NlaIV	GGNNCC	3 cut(s)	175, 798, 889
NmeAIII	GCCGAG	1 cut(s)	1094
NmuCI	GTSAC	2 cut(s)	197, 721
NsiI	ATGCAT	3 cut(s)	51, 432, 739
NspI	RCATGY	3 cut(s)	167, 364, 1018
PciI	ACATGT	2 cut(s)	163, 1014
PciSI	GCTCTTC	1 cut(s)	1044
PdmI	GAANNNNTTC	1 cut(s)	272
PfeI	GAWTC	6 cut(s)	122, 239, 386, 490, 571, 898
PflMI	CCANNNNNTGG	1 cut(s)	431
PkrI	GCNGC	4 cut(s)	773, 862, 1073, 1111
PleI	GAGTC	3 cut(s)	194, 333, 472
PpsI	GAGTC	3 cut(s)	194, 333, 472
PscI	ACATGT	2 cut(s)	163, 1014
Psp6I	CCWGG	2 cut(s)	560, 850
PspGI	CCWGG	2 cut(s)	560, 850
PspN4I	GGNNCC	3 cut(s)	175, 798, 889
PspPI	GGNCC	3 cut(s)	174, 253, 929
PstI	CTGCAG	1 cut(s)	865
PstNI	CAGNNNCTG	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	881
RsaI	GTAC	1 cut(s)	798
RsaNI	GTAC	1 cut(s)	797
SapI	GCTCTTC	1 cut(s)	1044
SaqAI	TTAA	1 cut(s)	831
SatI	GCNGC	4 cut(s)	772, 861, 1072, 1110
Sau3AI	GATC	2 cut(s)	191, 881
Sau96I	GGNCC	3 cut(s)	174, 253, 929
SchI	GAGTC	3 cut(s)	194, 334, 472
ScrFI	CCNGG	2 cut(s)	562, 852
SfaNI	GCATC	7 cut(s)	74, 199, 429, 438, 624, 724, 746
SfcI	CTRYAG	1 cut(s)	861
SinI	GGWCC	1 cut(s)	253
Sse9I	AATT	7 cut(s)	153, 391, 587, 652, 832, 872, 945
SsiI	CCGC	4 cut(s)	101, 805, 1071, 1107
StyD4I	CCNGG	2 cut(s)	560, 850
StyI	CCWWGG	3 cut(s)	243, 905, 1003
TaaI	ACNGT	1 cut(s)	457
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	190
TasI	AATT	7 cut(s)	153, 391, 587, 652, 832, 872, 945
TauI	GCSGC	1 cut(s)	1074
TfiI	GAWTC	6 cut(s)	122, 239, 386, 490, 571, 898
Tru1I	TTAA	1 cut(s)	831
Tru9I	TTAA	1 cut(s)	831
TscAI	CASTG	4 cut(s)	153, 342, 730, 1081
TseFI	GTSAC	2 cut(s)	197, 721
TseI	GCWGC	3 cut(s)	771, 860, 1109
Tsp45I	GTSAC	2 cut(s)	197, 721
TspDTI	ATGAA	8 cut(s)	17, 123, 129, 309, 371, 645, 803, 828
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	4 cut(s)	153, 342, 730, 1081
Van91I	CCANNNNNTGG	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	1 cut(s)	872
XceI	RCATGY	3 cut(s)	167, 364, 1018
XmnI	GAANNNNTTC	1 cut(s)	272
Zsp2I	ATGCAT	3 cut(s)	51, 432, 739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.