FvH4_1g08070
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017962
Physical Location & Seq
Reverse (-)
4260351 .. 4261944
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08070.t1

Sequence Viewer

Length: 1503 bp
ATGATGATGATGAGAGGTAACAACCGTTCTTCTGGCCCTTCAAACTGTGTCAGGAGATCAAGTTCCTCATCTTCAAATTTCAAGGCATCTCGGCAGAAAGTTGCTCCCCCAAGAAAAAGAGATGCTTTCTCCACTCTCATGCAACAAGGTATTCAAAGGATCGACACCAAACAGCTTAGCAAAAAGCTAGAGGATACAGAAATCCCAGTGTCAGCAAAACGCGAGATCAAGCGTGAAATCGAAACAAGACAACATGATGAAGATGATGCTGCCGCCGCCGCTGCCGCTGCAGTGATTCTGGAACTAACACCTCAACGACCACCTAAACCTGCAAGAGCCTCTCCCTGGTTAATTGAAAAGTTGTATGACAAACGAGGACCGGAGCGAGCCAAAGCATTGGCCGGAGTAATTGAGCTACTGAACAAGAAGTTGGATCACGAAGACCTGAAAAAGAGATATGTTGTAGAGCTTCTCTACCGATGCTTATGTAGTGTGAAGAAAGGCTCCACCAAAGAGGTTCAGAATGCGTTGCAAGTGATTGGTTTGCTTTCAATCACCGTTGATTGTCAAGAAAAGATGGCTGAGATTTACAGGGAGTTTCTTGATGCAGCTTCCAGCAGTGCTTGTCTAAAGAAGGCTGGAACAAACACAACGAAGATGCTGGAATGCTTGGGAGTTGTCACCTTTTTTGGTGCAATTGGCGCAGAGGAGACTCAAAAGGGAATGAAGGTTATTTGGGACTTCTTGATGAGTTTCAAGTCTGAATCCGGTAGTGATGATGTGATCAACAGAAAGAAGCAGTCACATGAGATCCTAGTTGCTGCAATATATTCTTGGTGCTTTCTTCTTACTAGCACGGATGGATGGCGACTGAACCAAAATTGGAGAGGTGCAATTTCCTTCTTCATGGACATCTTGGACAATGATGAAGTATTAGTTCAAGGGGCAGCATGTGCGGCACTAGCATTGATTTTCGAGACTGATGCTCTTGACAAATTCTGGGACGGAGCAAATGATACAACCTTGCCATATTCGCAGTTGCGAGAAACACTCAGGGAGATGATTTTGAAGAAAGTGAGCAGTCTTAACATGAACACGAATGTTGTGGAGTACTTCAAGACTCTTCACTGCCCGATATCACGTCCAACTGTTTGTGAAAAAAAGCTGGAATTGACATCATGGTATCAGGTGATTCAGCTGGCATTTCTAAAGAGTTTTCTAGGGAAAGAATTTGAGAACTTCATGACCAAGGAAGAGAAACTGCAGAGCTTTTTTGAGGTCAATCCTAATAGCAATGACAATGTGGGTGAAGAACTCTTTGTGCCTACGATCGAAAAGATCACTGTAAATATGGTCATACCTGAAAGAAGAGATCCACAGACAATGACAGCGGAGCAAAGGAAGAAAGAAAGAGTTTTGAGGACTTCCATTCAGGGCAAGGCGAAGACACAACTAAGGACCAAACATAGGCTAATGTCAGAGGAATTGAACTGCTTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

501

Amino Acids

56.81

Weight (kDa)

8.85

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IFRD PF05004 118 - 337 6.8e-40 Interferon-related developmental regulator (IFRD)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017962)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08070 FvH4_5g33120
rosa_chinensis RchiOBHm_Chr2g0094131
rosa_laevigata RLG00000016458
rosa_multiflora Rmu_ssc0000149.1_g000004
rosa_roxburghii Rroxscaffold_2G00149030
rosa_rugosa Rorug02G0041100
rosa_samantha Rh2AG088800 Rh2BG088900 Rh2CG091300 Rh2DG087900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 337
AccII CGCG 1 cut(s) 222
AciI CCGC 6 cut(s) 273, 276, 279, 285, 956, 1391
AclWI GGATC 4 cut(s) 167, 441, 805, 1367
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 3 cut(s) 76, 995, 1229
AfaI GTAC 1 cut(s) 1112
AfiI CCNNNNNNNGG 2 cut(s) 345, 1467
AjiI CACGTC 1 cut(s) 1142
AjnI CCWGG 1 cut(s) 344
AjuI GAANNNNNNNTTGG 2 cut(s) 413, 445
AloI GAACNNNNNNTCC 2 cut(s) 46, 78
AluBI AGCT 8 cut(s) 175, 187, 415, 469, 611, 1165, 1198, 1269
AluI AGCT 8 cut(s) 175, 187, 415, 469, 611, 1165, 1198, 1269
Alw26I GTCTC 2 cut(s) 704, 971
AlwI GGATC 4 cut(s) 167, 441, 805, 1367
AoxI GGCC 2 cut(s) 34, 399
ApeKI GCWGC 6 cut(s) 269, 281, 287, 608, 821, 947
ApoI RAATTY 3 cut(s) 76, 995, 1229
AspLEI GCGC 1 cut(s) 704
AspS9I GGNCC 3 cut(s) 35, 377, 1458
AsuHPI GGTGA 4 cut(s) 547, 673, 1201, 1319
AvaII GGWCC 2 cut(s) 377, 1458
BbsI GAAGAC 2 cut(s) 447, 1451
BbvI GCAGC 6 cut(s) 256, 268, 274, 620, 808, 959
BccI CCATC 3 cut(s) 571, 854, 858
BcgI CGANNNNNNTGC 2 cut(s) 965, 999
BciT130I CCWGG 1 cut(s) 346
BciVI GTATCC 1 cut(s) 187
BclI TGATCA 1 cut(s) 783
BcoDI GTCTC 2 cut(s) 704, 971
BfaI CTAG 5 cut(s) 188, 815, 852, 962, 1220
BfmI CTRYAG 2 cut(s) 288, 1262
BfuAI ACCTGC 1 cut(s) 337
BfuI GTATCC 1 cut(s) 187
BlpI GCTNAGC 1 cut(s) 176
BmcAI AGTACT 1 cut(s) 1112
Bme1390I CCNGG 1 cut(s) 346
Bme18I GGWCC 2 cut(s) 377, 1458
BmgBI CACGTC 1 cut(s) 1142
BmgT120I GGNCC 3 cut(s) 35, 377, 1458
BmiI GGNNCC 1 cut(s) 505
BmrFI CCNGG 1 cut(s) 346
BmrI ACTGGG 1 cut(s) 200
BmsI GCATC 7 cut(s) 95, 112, 256, 470, 595, 648, 973
BmuI ACTGGG 1 cut(s) 200
BpiI GAAGAC 2 cut(s) 447, 1451
BplI GAGNNNNNCTC 2 cut(s) 1035, 1067
Bpu1102I GCTNAGC 1 cut(s) 176
BsaJI CCNNGG 2 cut(s) 344, 1248
BsaWI WCCGGW 2 cut(s) 379, 767
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 2 cut(s) 345, 1467
Bse1I ACTGG 1 cut(s) 206
Bse3DI GCAATG 1 cut(s) 1300
BseBI CCWGG 1 cut(s) 346
BseDI CCNNGG 2 cut(s) 344, 1248
BseGI GGATG 2 cut(s) 865, 869
BseLI CCNNNNNNNGG 2 cut(s) 345, 1467
BseMI GCAATG 1 cut(s) 1300
BseMII CTCAG 2 cut(s) 573, 1066
BseNI ACTGG 1 cut(s) 206
BseRI GAGGAG 1 cut(s) 722
BseXI GCAGC 6 cut(s) 256, 268, 274, 620, 808, 959
Bsh1236I CGCG 1 cut(s) 222
Bsh1285I CGRYCG 1 cut(s) 1332
BshFI GGCC 2 cut(s) 36, 401
BsiEI CGRYCG 1 cut(s) 1332
BsiSI CCGG 3 cut(s) 380, 402, 768
BslFI GGGAC 2 cut(s) 752, 1016
BslI CCNNNNNNNGG 2 cut(s) 345, 1467
BsmAI GTCTC 2 cut(s) 704, 971
BsmFI GGGAC 2 cut(s) 752, 1016
BsmI GAATGC 2 cut(s) 529, 671
BsnI GGCC 2 cut(s) 36, 401
Bsp143I GATC 9 cut(s) 56, 159, 225, 433, 783, 810, 1329, 1338, 1372
Bsp1720I GCTNAGC 1 cut(s) 176
BspACI CCGC 6 cut(s) 273, 276, 279, 285, 956, 1391
BspANI GGCC 2 cut(s) 36, 401
BspCNI CTCAG 2 cut(s) 574, 1065
BspFNI CGCG 1 cut(s) 222
BspHI TCATGA 1 cut(s) 1242
BspLI GGNNCC 1 cut(s) 505
BspMAI CTGCAG 2 cut(s) 292, 1266
BspMI ACCTGC 1 cut(s) 337
BspPI GGATC 4 cut(s) 167, 441, 805, 1367
BsrDI GCAATG 1 cut(s) 1300
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 344, 1248
BssMI GATC 9 cut(s) 56, 159, 225, 433, 783, 810, 1329, 1338, 1372
BssT1I CCWWGG 1 cut(s) 1248
Bst2UI CCWGG 1 cut(s) 346
Bst4CI ACNGT 5 cut(s) 26, 47, 559, 1150, 1345
Bst6I CTCTTC 3 cut(s) 1128, 1248, 1363
BstAPI GCANNNNNTGC 1 cut(s) 953
BstC8I GCNNGC 2 cut(s) 387, 1200
BstDEI CTNAG 4 cut(s) 176, 582, 1052, 1454
BstF5I GGATG 2 cut(s) 865, 869
BstFNI CGCG 1 cut(s) 222
BstHHI GCGC 1 cut(s) 704
BstKTI GATC 9 cut(s) 59, 162, 228, 436, 786, 813, 1332, 1341, 1375
BstMAI GTCTC 2 cut(s) 704, 971
BstMBI GATC 9 cut(s) 56, 159, 225, 433, 783, 810, 1329, 1338, 1372
BstMCI CGRYCG 1 cut(s) 1332
BstNI CCWGG 1 cut(s) 346
BstNSI RCATGY 1 cut(s) 954
BstSCI CCNGG 1 cut(s) 344
BstSFI CTRYAG 2 cut(s) 288, 1262
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 6 cut(s) 256, 268, 274, 620, 808, 959
BstV2I GAAGAC 2 cut(s) 447, 1451
BstX2I RGATCY 2 cut(s) 810, 1372
BstXI CCANNNNNNTGG 1 cut(s) 397
BstYI RGATCY 2 cut(s) 810, 1372
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 2 cut(s) 36, 401
BtrI CACGTC 1 cut(s) 1142
BtsCI GGATG 2 cut(s) 865, 869
BtsI GCAGTG 3 cut(s) 297, 625, 1126
BtsIMutI CAGTG 5 cut(s) 213, 297, 625, 1126, 1341
BveI ACCTGC 1 cut(s) 337
Cac8I GCNNGC 2 cut(s) 387, 1200
CciI TCATGA 1 cut(s) 1242
CfoI GCGC 1 cut(s) 704
Cfr13I GGNCC 3 cut(s) 35, 377, 1458
Csp6I GTAC 1 cut(s) 1111
CviAII CATG 8 cut(s) 139, 254, 806, 907, 951, 1090, 1179, 1243
CviQI GTAC 1 cut(s) 1111
DdeI CTNAG 4 cut(s) 176, 582, 1052, 1454
DpnI GATC 9 cut(s) 58, 161, 227, 435, 785, 812, 1331, 1340, 1374
DpnII GATC 9 cut(s) 56, 159, 225, 433, 783, 810, 1329, 1338, 1372
EaeI YGGCCR 1 cut(s) 399
Eam1104I CTCTTC 3 cut(s) 1128, 1248, 1363
EarI CTCTTC 3 cut(s) 1128, 1248, 1363
Eco130I CCWWGG 1 cut(s) 1248
Eco32I GATATC 1 cut(s) 1137
Eco47I GGWCC 2 cut(s) 377, 1458
EcoRII CCWGG 1 cut(s) 344
EcoRV GATATC 1 cut(s) 1137
EcoT14I CCWWGG 1 cut(s) 1248
ErhI CCWWGG 1 cut(s) 1248
FaeI CATG 8 cut(s) 142, 257, 809, 910, 954, 1093, 1182, 1246
FalI AAGNNNNNCTT 2 cut(s) 109, 141
FaqI GGGAC 2 cut(s) 752, 1016
FatI CATG 8 cut(s) 138, 253, 805, 906, 950, 1089, 1178, 1242
FbaI TGATCA 1 cut(s) 783
FokI GGATG 2 cut(s) 872, 876
FspBI CTAG 5 cut(s) 188, 815, 852, 962, 1220
GlaI GCGC 1 cut(s) 703
HaeIII GGCC 2 cut(s) 36, 401
HapII CCGG 3 cut(s) 380, 402, 768
HhaI GCGC 1 cut(s) 704
Hin1II CATG 8 cut(s) 142, 257, 809, 910, 954, 1093, 1182, 1246
Hin6I GCGC 1 cut(s) 702
HinP1I GCGC 1 cut(s) 702
HinfI GANTC 5 cut(s) 295, 712, 764, 1120, 1192
HpaII CCGG 3 cut(s) 380, 402, 768
HphI GGTGA 4 cut(s) 547, 673, 1201, 1319
Hpy188I TCNGA 3 cut(s) 522, 763, 1480
HpyAV CCTTC 4 cut(s) 48, 628, 721, 910
HpyCH4III ACNGT 5 cut(s) 26, 47, 559, 1150, 1345
HpyCH4IV ACGT 1 cut(s) 1141
HpyCH4V TGCA 9 cut(s) 142, 290, 332, 532, 608, 695, 824, 893, 1264
HpyF3I CTNAG 4 cut(s) 176, 582, 1052, 1454
HpySE526I ACGT 1 cut(s) 1141
Hsp92II CATG 8 cut(s) 142, 257, 809, 910, 954, 1093, 1182, 1246
HspAI GCGC 1 cut(s) 702
Ksp22I TGATCA 1 cut(s) 783
Kzo9I GATC 9 cut(s) 56, 159, 225, 433, 783, 810, 1329, 1338, 1372
LmnI GCTCC 5 cut(s) 109, 382, 509, 1007, 1393
Lsp1109I GCAGC 6 cut(s) 256, 268, 274, 620, 808, 959
LweI GCATC 7 cut(s) 95, 112, 256, 470, 595, 648, 973
MaeI CTAG 5 cut(s) 188, 815, 852, 962, 1220
MaeII ACGT 1 cut(s) 1141
MaeIII GTNAC 3 cut(s) 17, 679, 801
MalI GATC 9 cut(s) 58, 161, 227, 435, 785, 812, 1331, 1340, 1374
MboI GATC 9 cut(s) 56, 159, 225, 433, 783, 810, 1329, 1338, 1372
MfeI CAATTG 1 cut(s) 696
MflI RGATCY 2 cut(s) 810, 1372
MlyI GAGTC 2 cut(s) 706, 1114
MmeI TCCRAC 2 cut(s) 411, 1169
MseI TTAA 3 cut(s) 350, 1086, 1501
MslI CAYNNNNRTG 1 cut(s) 137
MspA1I CMGCKG 4 cut(s) 281, 287, 1198, 1391
MspI CCGG 3 cut(s) 380, 402, 768
MspR9I CCNGG 1 cut(s) 346
MunI CAATTG 1 cut(s) 696
Mva1269I GAATGC 2 cut(s) 529, 671
MvaI CCWGG 1 cut(s) 346
MvnI CGCG 1 cut(s) 222
NdeII GATC 9 cut(s) 56, 159, 225, 433, 783, 810, 1329, 1338, 1372
NlaIII CATG 8 cut(s) 142, 257, 809, 910, 954, 1093, 1182, 1246
NlaIV GGNNCC 1 cut(s) 505
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 2 cut(s) 679, 801
NspI RCATGY 1 cut(s) 954
PagI TCATGA 1 cut(s) 1242
PctI GAATGC 2 cut(s) 529, 671
PfeI GAWTC 3 cut(s) 295, 764, 1192
Ple19I CGATCG 1 cut(s) 1332
PleI GAGTC 2 cut(s) 706, 1114
PpsI GAGTC 2 cut(s) 706, 1114
Psp6I CCWGG 1 cut(s) 344
PspGI CCWGG 1 cut(s) 344
PspN4I GGNNCC 1 cut(s) 505
PspPI GGNCC 3 cut(s) 35, 377, 1458
PsrI GAACNNNNNNTAC 2 cut(s) 10, 42
PstI CTGCAG 2 cut(s) 292, 1266
PsuI RGATCY 2 cut(s) 810, 1372
PvuI CGATCG 1 cut(s) 1332
PvuII CAGCTG 1 cut(s) 1198
RsaI GTAC 1 cut(s) 1112
RsaNI GTAC 1 cut(s) 1111
RseI CAYNNNNRTG 1 cut(s) 137
SaqAI TTAA 3 cut(s) 350, 1086, 1501
Sau3AI GATC 9 cut(s) 56, 159, 225, 433, 783, 810, 1329, 1338, 1372
Sau96I GGNCC 3 cut(s) 35, 377, 1458
ScaI AGTACT 1 cut(s) 1112
SchI GAGTC 2 cut(s) 706, 1114
ScrFI CCNGG 1 cut(s) 346
SfaNI GCATC 7 cut(s) 95, 112, 256, 470, 595, 648, 973
SfcI CTRYAG 2 cut(s) 288, 1262
SinI GGWCC 2 cut(s) 377, 1458
SmiMI CAYNNNNRTG 1 cut(s) 137
SsiI CCGC 6 cut(s) 273, 276, 279, 285, 956, 1391
SspMI CTAG 5 cut(s) 188, 815, 852, 962, 1220
StyD4I CCNGG 1 cut(s) 344
StyI CCWWGG 1 cut(s) 1248
TaaI ACNGT 5 cut(s) 26, 47, 559, 1150, 1345
TaiI ACGT 1 cut(s) 1144
TaqI TCGA 4 cut(s) 162, 240, 975, 1332
TatI WGTACW 1 cut(s) 1110
TauI GCSGC 5 cut(s) 275, 278, 281, 287, 959
TfiI GAWTC 3 cut(s) 295, 764, 1192
Tru1I TTAA 3 cut(s) 350, 1086, 1501
Tru9I TTAA 3 cut(s) 350, 1086, 1501
TscAI CASTG 5 cut(s) 213, 297, 625, 1133, 1348
TseFI GTSAC 2 cut(s) 679, 801
TseI GCWGC 6 cut(s) 269, 281, 287, 608, 821, 947
Tsp45I GTSAC 2 cut(s) 679, 801
TspDTI ATGAA 6 cut(s) 273, 740, 895, 942, 1106, 1231
TspGWI ACGGA 2 cut(s) 872, 1020
TspRI CASTG 5 cut(s) 213, 297, 625, 1133, 1348
VpaK11BI GGWCC 2 cut(s) 377, 1458
XapI RAATTY 3 cut(s) 76, 995, 1229
XceI RCATGY 1 cut(s) 954
XspI CTAG 5 cut(s) 188, 815, 852, 962, 1220
ZrmI AGTACT 1 cut(s) 1112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.