Rh2BG088900
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017962
Physical Location & Seq
Reverse (-)
6930817 .. 6934740
3924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG088900.1

Sequence Viewer

Length: 1221 bp
ATGGGCAGGATGATGAGAGGTAACTGCAATCGTTCTTCTTCTGGCCCTTCAAACTGCGTCAGGAGAACAAGTTCTGCTTCTTCGAACTTCAAGGCATCTAGACAAAAGGTTGCTCCACCAAGAAAAAGAGACGTTCACTCCGCTCTCATGCAAGACATTCACAGGATCGACACTCAAACACTTGGAGAAAAGCTCCAGGACACAGAAACACCAGGGTCAGTAAAGCACGAGATTAAACGCGAAATAGAAACTAGACAACATGACCAAGATGATGCTGCTGCTGACGCTGCGACTGCTGTGATTGTGGGAAACACACCTCAACTAGCACCTCAACCTGCAAAAGCCTCTCCTTGGTTAATTGACAAGTTGTATGACAAACGTGGACCGGTGCGAGCCAAGGCGTTGGCCGGAGTAATTGCACTGCTAAACCAAGAGTTGGATCATGAAGACTTGAAAAAGAATTATGTTGTAGAGCTTCTCTACCGATGCTTGTGCGGTGTAAAGAAGGGTTCCACCAAAGAGGTTCAGTATTCATTGAAAGTTATCGGCTTGCTCTCAATCATCGTCGATTGTCAAGACAAGATGTCTGAAATTTACAGGGAGTTTCTTGCTGTATCTTCCACCAGTGCTTTTCTAAAGAAGGCTGGAACCAACACAAGAGAGATGTTGGAATGTCTGGGTGTTGTTACCTTTTTCGGTGGAATTAATGCAGAGGAGACTCAAGCTGCAATGAAGGTTATTTGGGACTTCATGATGAATTTCAAATCGGAATCCGGTAGTGATGATGTAAATAACCGAAAGAAGCATTCTTCGGAGATCCTAGTTGCTGCAATATATTCTTGGCTGTTTCTTCTTACTAGCATGGAAAAAGGGGGATTGAACTATTGGACAGGGGCAATTTCCTTCTTCATGAACCTGTTGGACAACTATGATGACATAGTTCATGCGGCAGCATGTGAAGCACTAGCATTGATTTTCGAGATTGATAGCCTTGACAAATTCTGGAATGGAGCAAATGATTCAAGCTTGCCATATTCGCAGTTGAGAAAAACACTCAGGGAGATGATTTTGAAGAAATTGAGCAGTCTAAACATGAACTCACATGTTGTGAAGTATTTCAAGACTCTTCAATTCCCGGGAAAACGTATACCTCTTTGTGAAAAAGAACTGGGACCTGAGCATCCAAGTTTGAAAGGAGGCAGCCAGTGTTATATGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

406

Amino Acids

45.36

Weight (kDa)

8.69

Isoelectric Point (pI)

36.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IFRD PF05004 119 - 368 5.9e-36 Interferon-related developmental regulator (IFRD)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017962)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08070 FvH4_5g33120
rosa_chinensis RchiOBHm_Chr2g0094131
rosa_laevigata RLG00000016458
rosa_multiflora Rmu_ssc0000149.1_g000004
rosa_roxburghii Rroxscaffold_2G00149030
rosa_rugosa Rorug02G0041100
rosa_samantha Rh2AG088800 Rh2BG088900 Rh2CG091300 Rh2DG087900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 343
AccB7I CCANNNNNTGG 1 cut(s) 436
AccBSI CCGCTC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 1147
AccII CGCG 1 cut(s) 240
AciI CCGC 3 cut(s) 141, 495, 947
AclWI GGATC 3 cut(s) 173, 447, 811
AcoI YGGCCR 1 cut(s) 405
AcsI RAATTY 3 cut(s) 591, 757, 998
AfiI CCNNNNNNNGG 2 cut(s) 351, 436
AflIII ACRYGT 1 cut(s) 1102
AgeI ACCGGT 1 cut(s) 385
AhdI GACNNNNNGTC 1 cut(s) 583
AjnI CCWGG 2 cut(s) 195, 211
AloI GAACNNNNNNTCC 2 cut(s) 55, 87
AluBI AGCT 4 cut(s) 193, 475, 725, 1026
AluI AGCT 4 cut(s) 193, 475, 725, 1026
Alw26I GTCTC 2 cut(s) 123, 710
AlwI GGATC 3 cut(s) 173, 447, 811
Ama87I CYCGRG 1 cut(s) 1135
AoxI GGCC 2 cut(s) 43, 405
ApeKI GCWGC 7 cut(s) 275, 278, 287, 725, 827, 950, 1200
ApoI RAATTY 3 cut(s) 591, 757, 998
AseI ATTAAT 1 cut(s) 705
AsiGI ACCGGT 1 cut(s) 385
Asp700I GAANNNNTTC 2 cut(s) 70, 1115
AspS9I GGNCC 3 cut(s) 44, 383, 1172
AsuC2I CCSGG 2 cut(s) 1136, 1137
AsuII TTCGAA 1 cut(s) 83
AvaI CYCGRG 1 cut(s) 1135
AvaII GGWCC 2 cut(s) 383, 1172
BauI CACGAG 1 cut(s) 227
BbsI GAAGAC 1 cut(s) 453
BbvI GCAGC 7 cut(s) 262, 265, 274, 712, 814, 962, 1212
BcgI CGANNNNNNTGC 2 cut(s) 474, 508
BciT130I CCWGG 2 cut(s) 197, 213
BcnI CCSGG 2 cut(s) 1136, 1137
BcoDI GTCTC 2 cut(s) 123, 710
BfaI CTAG 7 cut(s) 99, 252, 323, 821, 858, 965, 1219
BfuAI ACCTGC 1 cut(s) 343
BisI GCNGC 8 cut(s) 276, 279, 288, 726, 828, 948, 951, 1201
BlsI GCNGC 8 cut(s) 277, 280, 289, 727, 829, 949, 952, 1202
Bme1390I CCNGG 4 cut(s) 197, 213, 1136, 1137
Bme18I GGWCC 2 cut(s) 383, 1172
BmeRI GACNNNNNGTC 1 cut(s) 583
BmeT110I CYCGRG 1 cut(s) 1135
BmgT120I GGNCC 3 cut(s) 44, 383, 1172
BmiI GGNNCC 3 cut(s) 511, 649, 1173
BmrFI CCNGG 4 cut(s) 197, 213, 1136, 1137
BmrI ACTGGG 1 cut(s) 1178
BmsI GCATC 4 cut(s) 104, 262, 476, 1189
BmuI ACTGGG 1 cut(s) 1178
BpiI GAAGAC 1 cut(s) 453
BplI GAGNNNNNCTC 2 cut(s) 177, 209
BpmI CTGGAG 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 1176
Bpu14I TTCGAA 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 705
BpuMI CCSGG 2 cut(s) 1136, 1137
BsaJI CCNNGG 4 cut(s) 212, 350, 396, 1135
BsaWI WCCGGW 2 cut(s) 385, 773
BsaXI ACNNNNNCTCC 4 cut(s) 55, 85, 122, 152
Bsc4I CCNNNNNNNGG 2 cut(s) 351, 436
Bse118I RCCGGY 1 cut(s) 385
Bse1I ACTGG 3 cut(s) 624, 1173, 1204
Bse3DI GCAATG 1 cut(s) 735
BseBI CCWGG 2 cut(s) 197, 213
BseDI CCNNGG 4 cut(s) 212, 350, 396, 1135
BseGI GGATG 2 cut(s) 15, 1180
BseLI CCNNNNNNNGG 2 cut(s) 351, 436
BseMI GCAATG 1 cut(s) 735
BseMII CTCAG 2 cut(s) 1069, 1167
BseNI ACTGG 3 cut(s) 624, 1173, 1204
BseRI GAGGAG 1 cut(s) 728
BseXI GCAGC 7 cut(s) 262, 265, 274, 712, 814, 962, 1212
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 2 cut(s) 45, 407
BshTI ACCGGT 1 cut(s) 385
BsiHKCI CYCGRG 1 cut(s) 1135
BsiSI CCGG 4 cut(s) 386, 408, 774, 1136
BslFI GGGAC 2 cut(s) 758, 1185
BslI CCNNNNNNNGG 2 cut(s) 351, 436
BsmAI GTCTC 2 cut(s) 123, 710
BsmBI CGTCTC 1 cut(s) 123
BsmFI GGGAC 2 cut(s) 758, 1185
BsmI GAATGC 1 cut(s) 805
BsnI GGCC 2 cut(s) 45, 407
BsoBI CYCGRG 1 cut(s) 1135
Bsp119I TTCGAA 1 cut(s) 83
Bsp143I GATC 3 cut(s) 165, 439, 816
BspACI CCGC 3 cut(s) 141, 495, 947
BspANI GGCC 2 cut(s) 45, 407
BspCNI CTCAG 2 cut(s) 1068, 1168
BspFNI CGCG 1 cut(s) 240
BspHI TCATGA 3 cut(s) 442, 750, 909
BspLI GGNNCC 3 cut(s) 511, 649, 1173
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 3 cut(s) 173, 447, 811
BspT104I TTCGAA 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 735
BsrFI RCCGGY 1 cut(s) 385
BsrI ACTGG 3 cut(s) 624, 1173, 1204
BssAI RCCGGY 1 cut(s) 385
BssECI CCNNGG 4 cut(s) 212, 350, 396, 1135
BssMI GATC 3 cut(s) 165, 439, 816
BssNAI GTATAC 1 cut(s) 1148
BssSI CACGAG 1 cut(s) 227
BssT1I CCWWGG 2 cut(s) 350, 396
Bst1107I GTATAC 1 cut(s) 1148
Bst2BI CACGAG 1 cut(s) 227
Bst2UI CCWGG 2 cut(s) 197, 213
Bst6I CTCTTC 1 cut(s) 1131
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 393, 551, 1028
BstDEI CTNAG 2 cut(s) 1055, 1176
BstF5I GGATG 2 cut(s) 15, 1180
BstFNI CGCG 1 cut(s) 240
BstKTI GATC 3 cut(s) 168, 442, 819
BstMAI GTCTC 2 cut(s) 123, 710
BstMBI GATC 3 cut(s) 165, 439, 816
BstMWI GCNNNNNNNGC 5 cut(s) 284, 287, 293, 959, 1036
BstNI CCWGG 2 cut(s) 197, 213
BstNSI RCATGY 2 cut(s) 957, 1106
BstSCI CCNGG 4 cut(s) 195, 211, 1134, 1135
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 7 cut(s) 262, 265, 274, 712, 814, 962, 1212
BstV2I GAAGAC 1 cut(s) 453
BstX2I RGATCY 1 cut(s) 816
BstXI CCANNNNNNTGG 1 cut(s) 403
BstYI RGATCY 1 cut(s) 816
BstZ17I GTATAC 1 cut(s) 1148
BsuRI GGCC 2 cut(s) 45, 407
BtsCI GGATG 2 cut(s) 15, 1180
BtsI GCAGTG 1 cut(s) 419
BtsIMutI CAGTG 3 cut(s) 419, 631, 1211
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 3 cut(s) 393, 551, 1028
CciI TCATGA 3 cut(s) 442, 750, 909
Cfr10I RCCGGY 1 cut(s) 385
Cfr13I GGNCC 3 cut(s) 44, 383, 1172
Cfr9I CCCGGG 1 cut(s) 1135
CseI GACGC 2 cut(s) 46, 293
CspAI ACCGGT 1 cut(s) 385
DdeI CTNAG 2 cut(s) 1055, 1176
DpnI GATC 3 cut(s) 167, 441, 818
DpnII GATC 3 cut(s) 165, 439, 816
DriI GACNNNNNGTC 1 cut(s) 583
EaeI YGGCCR 1 cut(s) 405
Eam1104I CTCTTC 1 cut(s) 1131
Eam1105I GACNNNNNGTC 1 cut(s) 583
EarI CTCTTC 1 cut(s) 1131
Eco130I CCWWGG 2 cut(s) 350, 396
Eco47I GGWCC 2 cut(s) 383, 1172
Eco88I CYCGRG 1 cut(s) 1135
EcoO109I RGGNCCY 1 cut(s) 1172
EcoRII CCWGG 2 cut(s) 195, 211
EcoT14I CCWWGG 2 cut(s) 350, 396
ErhI CCWWGG 2 cut(s) 350, 396
Esp3I CGTCTC 1 cut(s) 123
FalI AAGNNNNNCTT 2 cut(s) 61, 93
FaqI GGGAC 2 cut(s) 758, 1185
FblI GTMKAC 1 cut(s) 1147
Fnu4HI GCNGC 8 cut(s) 276, 279, 288, 726, 828, 948, 951, 1201
FokI GGATG 2 cut(s) 22, 1167
Fsp4HI GCNGC 8 cut(s) 276, 279, 288, 726, 828, 948, 951, 1201
FspBI CTAG 7 cut(s) 99, 252, 323, 821, 858, 965, 1219
GluI GCNGC 8 cut(s) 276, 279, 288, 726, 828, 948, 951, 1201
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 2 cut(s) 45, 407
HapII CCGG 4 cut(s) 386, 408, 774, 1136
HgaI GACGC 2 cut(s) 46, 293
HindIII AAGCTT 1 cut(s) 1024
HinfI GANTC 4 cut(s) 718, 770, 1019, 1123
HpaII CCGG 4 cut(s) 386, 408, 774, 1136
Hpy166II GTNNAC 3 cut(s) 136, 383, 1148
Hpy188I TCNGA 3 cut(s) 589, 769, 814
Hpy188III TCNNGA 9 cut(s) 61, 99, 443, 575, 751, 910, 979, 1003, 1120
Hpy8I GTNNAC 3 cut(s) 136, 383, 1148
Hpy99I CGWCG 1 cut(s) 569
HpyAV CCTTC 5 cut(s) 57, 499, 634, 727, 913
HpyCH4IV ACGT 3 cut(s) 132, 379, 1144
HpyCH4V TGCA 7 cut(s) 27, 151, 338, 419, 710, 728, 830
HpyF10VI GCNNNNNNNGC 5 cut(s) 284, 287, 293, 959, 1036
HpyF3I CTNAG 2 cut(s) 1055, 1176
HpySE526I ACGT 3 cut(s) 132, 379, 1144
Kzo9I GATC 3 cut(s) 165, 439, 816
LmnI GCTCC 3 cut(s) 118, 198, 1010
Lsp1109I GCAGC 7 cut(s) 262, 265, 274, 712, 814, 962, 1212
LweI GCATC 4 cut(s) 104, 262, 476, 1189
MaeI CTAG 7 cut(s) 99, 252, 323, 821, 858, 965, 1219
MaeII ACGT 3 cut(s) 132, 379, 1144
MaeIII GTNAC 2 cut(s) 20, 685
MalI GATC 3 cut(s) 167, 441, 818
MbiI CCGCTC 1 cut(s) 143
MboI GATC 3 cut(s) 165, 439, 816
MflI RGATCY 1 cut(s) 816
MlyI GAGTC 2 cut(s) 712, 1117
MmeI TCCRAC 3 cut(s) 417, 648, 900
MnlI CCTC 8 cut(s) 11, 327, 339, 355, 514, 706, 1161, 1190
MroXI GAANNNNTTC 2 cut(s) 70, 1115
MseI TTAA 3 cut(s) 234, 356, 705
MspI CCGG 4 cut(s) 386, 408, 774, 1136
MspR9I CCNGG 4 cut(s) 197, 213, 1136, 1137
Mva1269I GAATGC 1 cut(s) 805
MvaI CCWGG 2 cut(s) 197, 213
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 5 cut(s) 284, 287, 293, 959, 1036
NciI CCSGG 2 cut(s) 1136, 1137
NdeII GATC 3 cut(s) 165, 439, 816
NlaIV GGNNCC 3 cut(s) 511, 649, 1173
NspI RCATGY 2 cut(s) 957, 1106
NspV TTCGAA 1 cut(s) 83
PagI TCATGA 3 cut(s) 442, 750, 909
PciI ACATGT 1 cut(s) 1102
PctI GAATGC 1 cut(s) 805
PdmI GAANNNNTTC 2 cut(s) 70, 1115
PfeI GAWTC 2 cut(s) 770, 1019
PflMI CCANNNNNTGG 1 cut(s) 436
PfoI TCCNGGA 1 cut(s) 195
PinAI ACCGGT 1 cut(s) 385
PkrI GCNGC 8 cut(s) 277, 280, 289, 727, 829, 949, 952, 1202
PleI GAGTC 2 cut(s) 712, 1117
PpsI GAGTC 2 cut(s) 712, 1117
PpuMI RGGWCCY 1 cut(s) 1172
PscI ACATGT 1 cut(s) 1102
PshBI ATTAAT 1 cut(s) 705
Psp5II RGGWCCY 1 cut(s) 1172
Psp6I CCWGG 2 cut(s) 195, 211
PspGI CCWGG 2 cut(s) 195, 211
PspN4I GGNNCC 3 cut(s) 511, 649, 1173
PspPI GGNCC 3 cut(s) 44, 383, 1172
PspPPI RGGWCCY 1 cut(s) 1172
PsuI RGATCY 1 cut(s) 816
SaqAI TTAA 3 cut(s) 234, 356, 705
SatI GCNGC 8 cut(s) 276, 279, 288, 726, 828, 948, 951, 1201
Sau3AI GATC 3 cut(s) 165, 439, 816
Sau96I GGNCC 3 cut(s) 44, 383, 1172
SchI GAGTC 2 cut(s) 712, 1117
ScrFI CCNGG 4 cut(s) 197, 213, 1136, 1137
SfaNI GCATC 4 cut(s) 104, 262, 476, 1189
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 2 cut(s) 383, 1172
SmaI CCCGGG 1 cut(s) 1137
SmlI CTYRAG 1 cut(s) 720
SmoI CTYRAG 1 cut(s) 720
SsiI CCGC 3 cut(s) 141, 495, 947
SspMI CTAG 7 cut(s) 99, 252, 323, 821, 858, 965, 1219
StyD4I CCNGG 4 cut(s) 195, 211, 1134, 1135
StyI CCWWGG 2 cut(s) 350, 396
TaiI ACGT 3 cut(s) 135, 382, 1147
TaqI TCGA 4 cut(s) 83, 168, 567, 978
TauI GCSGC 1 cut(s) 950
TfiI GAWTC 2 cut(s) 770, 1019
Tru1I TTAA 3 cut(s) 234, 356, 705
Tru9I TTAA 3 cut(s) 234, 356, 705
TscAI CASTG 3 cut(s) 426, 631, 1211
TseI GCWGC 7 cut(s) 275, 278, 287, 725, 827, 950, 1200
TspDTI ATGAA 9 cut(s) 459, 522, 739, 746, 770, 898, 926, 932, 1109
TspMI CCCGGG 1 cut(s) 1135
TspRI CASTG 3 cut(s) 426, 631, 1211
Van91I CCANNNNNTGG 1 cut(s) 436
VpaK11BI GGWCC 2 cut(s) 383, 1172
VspI ATTAAT 1 cut(s) 705
XapI RAATTY 3 cut(s) 591, 757, 998
XbaI TCTAGA 1 cut(s) 98
XceI RCATGY 2 cut(s) 957, 1106
XmaI CCCGGG 1 cut(s) 1135
XmiI GTMKAC 1 cut(s) 1147
XmnI GAANNNNTTC 2 cut(s) 70, 1115
XspI CTAG 7 cut(s) 99, 252, 323, 821, 858, 965, 1219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.