Rh2DG087900
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0017962
Physical Location & Seq
Reverse (-)
6811641 .. 6813293
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG087900.1

Sequence Viewer

Length: 1545 bp
ATGGGCAGGATGATGAGAGGTAACTACAACCGTTCTTCTTCTGGCCCTTCAAACTGCGTCAGGAGAACAAGTTCTGCTTCTTCGAACTTCAAGGCATCTAGACAAAAGGTTGCTCCACCAAGAAAAAGAGACGTTCTCTCCGCTCCCATGCAAGATATTCACAGGATCGACACTCAAACACTTAGAAAAAAGCTCCAGGACACAGAAACACCAGGGTCAATAAAGCGCGAGATTAAACGCGAAATAGAAACTAGACAACATGATCAAGATGATGCTGCGACTGCTGTGATTGTGGAAAACACACCTCAAGTAGCAGCTCAACCTGCAAAAGCCTCTCCTTGGTTAATTGACAAGTTGTATGACAAACGTGGACCGGTGCGAGCCAAGGCGTTGGCCGGAGTAATTGCACTGCTAAACCAAGAGTTGGATCATGAAGACTTGAAAAAGAATTATGTTGTAGAGCTTCTCTACCGATGCTTGTGCGGTGTAAAGAAGGGTTCCACCAAAGAGGTTCAGTATTCATTGAAAGTTATCGGCTTGCTCTCAATCATCGTCGATTGTCAAGACAAGATGTCTGAAATTTACAGGGAGTTTCTTGCTGTATCTTCCACCAGTGCTTGTCTAAAGAAGGCTGGAACCAACACAACAAAGATGTTGGAATGTTTGGGAGTTGTTACCTTTTTCGGTGGAATTAATGCAGAGGAGACTCAAGCTGGAATGAAGGTTATTTGGGACTTCATGATGAATTTCAAATCGGAATCCGGTAGTGATGATGTAAATAACCGAAAGAAGCATTCTTCGGAGATCCTAGTTGCTGCAATATATTCTTGGCTGTTTCTTCTTACTAGCATGGAAAAAGGGGGATTGAACTATTGGACAGGGGCAATTTCCTTCTTCATGAACCTGTTGGACAACAATGATGACATAGTTCATGCGGCAGCATGTGAAGCACTAGCATTGATTTTCGAGATTGATAGCCTTGACAAATTCTGGAATGGAGCAAATGATTCAAGCTTGCCATATTCGCAGTTGAGAAAAACACTCAGGGAGATGATTTTGAAGAAATTGAGCAGTCTAAACATGAACTCACATGTTGTGAAGTATTTCAAGACTCTTCATTTCCCGGGAAAACGTATACCTCTTTGTGAAAAAGAACTGGTATTACCGTCATGGTATCGGCTGATTCAATTCAATTATTTGAGGAGTCTGCTAGGGAATGAGTTTGAAAACTACATGGCCAAGGAAAACAAACTCCAGAACTTTTTTGAGTTCGACCCTTATAGAAACAACAATGTGGGTGAAGAACAACTATATGAGTCTACGATCGTAAAGAATCAAAAGAACACGGCAAAAAATTCCATGCCAGAAGGAAGAGATCCACAAACACTGACAGCAAAACAAAGGAAGGAAGAGAAAGTTCGGAGAACTTCTTTGCGGAACAAAGAACAGACAAAACTAAGGAACAAAGACAGGGAAATGTCGGAGGAATTGAAGTGGTTGGATGGAGACAAAATTAATTTTTCTCTTTTGTTCACCGAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

514

Amino Acids

58.8

Weight (kDa)

9.18

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IFRD PF05004 115 - 364 1.5e-36 Interferon-related developmental regulator (IFRD)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017962)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08070 FvH4_5g33120
rosa_chinensis RchiOBHm_Chr2g0094131
rosa_laevigata RLG00000016458
rosa_multiflora Rmu_ssc0000149.1_g000004
rosa_roxburghii Rroxscaffold_2G00149030
rosa_rugosa Rorug02G0041100
rosa_samantha Rh2AG088800 Rh2BG088900 Rh2CG091300 Rh2DG087900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 331
AccB7I CCANNNNNTGG 1 cut(s) 424
AccBSI CCGCTC 1 cut(s) 143
AccI GTMKAC 2 cut(s) 1135, 1319
AccII CGCG 2 cut(s) 228, 240
AciI CCGC 4 cut(s) 141, 483, 935, 1435
AclWI GGATC 4 cut(s) 173, 435, 799, 1370
AcoI YGGCCR 2 cut(s) 393, 1236
AcsI RAATTY 5 cut(s) 579, 745, 986, 1354, 1539
AfiI CCNNNNNNNGG 2 cut(s) 339, 424
AflIII ACRYGT 1 cut(s) 1090
AgeI ACCGGT 1 cut(s) 373
AhdI GACNNNNNGTC 1 cut(s) 571
AjnI CCWGG 2 cut(s) 195, 211
AloI GAACNNNNNNTCC 2 cut(s) 55, 87
AluBI AGCT 5 cut(s) 193, 317, 463, 713, 1014
AluI AGCT 5 cut(s) 193, 317, 463, 713, 1014
Alw26I GTCTC 3 cut(s) 123, 698, 1500
AlwI GGATC 4 cut(s) 173, 435, 799, 1370
Ama87I CYCGRG 1 cut(s) 1123
AoxI GGCC 3 cut(s) 43, 393, 1236
ApeKI GCWGC 4 cut(s) 275, 314, 815, 938
ApoI RAATTY 5 cut(s) 579, 745, 986, 1354, 1539
AseI ATTAAT 2 cut(s) 693, 1515
AsiGI ACCGGT 1 cut(s) 373
Asp700I GAANNNNTTC 2 cut(s) 70, 1103
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 2 cut(s) 44, 371
AsuC2I CCSGG 2 cut(s) 1124, 1125
AsuHPI GGTGA 2 cut(s) 1310, 1525
AsuII TTCGAA 1 cut(s) 83
AvaI CYCGRG 1 cut(s) 1123
AvaII GGWCC 1 cut(s) 371
BalI TGGCCA 1 cut(s) 1238
BbsI GAAGAC 1 cut(s) 441
BbvI GCAGC 4 cut(s) 262, 326, 802, 950
BccI CCATC 1 cut(s) 1496
BceAI ACGGC 1 cut(s) 1362
BcgI CGANNNNNNTGC 2 cut(s) 462, 496
BciT130I CCWGG 2 cut(s) 197, 213
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 2 cut(s) 1124, 1125
BcoDI GTCTC 3 cut(s) 123, 698, 1500
BfaI CTAG 6 cut(s) 99, 252, 809, 846, 953, 1211
BfuAI ACCTGC 1 cut(s) 331
BisI GCNGC 5 cut(s) 276, 315, 816, 936, 939
BlsI GCNGC 5 cut(s) 277, 316, 817, 937, 940
Bme1390I CCNGG 4 cut(s) 197, 213, 1124, 1125
Bme18I GGWCC 1 cut(s) 371
BmeRI GACNNNNNGTC 1 cut(s) 571
BmeT110I CYCGRG 1 cut(s) 1123
BmgT120I GGNCC 2 cut(s) 44, 371
BmiI GGNNCC 2 cut(s) 499, 637
BmrFI CCNGG 4 cut(s) 197, 213, 1124, 1125
BmsI GCATC 3 cut(s) 104, 262, 464
BpiI GAAGAC 1 cut(s) 441
BplI GAGNNNNNCTC 2 cut(s) 120, 152
BpmI CTGGAG 2 cut(s) 179, 1238
Bpu14I TTCGAA 1 cut(s) 83
BpuEI CTTGAG 2 cut(s) 291, 693
BpuMI CCSGG 2 cut(s) 1124, 1125
BsaJI CCNNGG 5 cut(s) 212, 338, 384, 1123, 1239
BsaWI WCCGGW 2 cut(s) 373, 761
BsaXI ACNNNNNCTCC 4 cut(s) 55, 85, 122, 152
Bsc4I CCNNNNNNNGG 2 cut(s) 339, 424
Bse118I RCCGGY 1 cut(s) 373
Bse1I ACTGG 2 cut(s) 612, 1161
BseBI CCWGG 2 cut(s) 197, 213
BseDI CCNNGG 5 cut(s) 212, 338, 384, 1123, 1239
BseGI GGATG 2 cut(s) 15, 1507
BseLI CCNNNNNNNGG 2 cut(s) 339, 424
BseMII CTCAG 1 cut(s) 1057
BseNI ACTGG 2 cut(s) 612, 1161
BseRI GAGGAG 2 cut(s) 716, 1216
BseXI GCAGC 4 cut(s) 262, 326, 802, 950
Bsh1236I CGCG 2 cut(s) 228, 240
Bsh1285I CGRYCG 1 cut(s) 1326
BshFI GGCC 3 cut(s) 45, 395, 1238
BshTI ACCGGT 1 cut(s) 373
BsiEI CGRYCG 1 cut(s) 1326
BsiHKCI CYCGRG 1 cut(s) 1123
BsiSI CCGG 4 cut(s) 374, 396, 762, 1124
BslFI GGGAC 1 cut(s) 746
BslI CCNNNNNNNGG 2 cut(s) 339, 424
BsmAI GTCTC 3 cut(s) 123, 698, 1500
BsmBI CGTCTC 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 746
BsmI GAATGC 1 cut(s) 793
BsnI GGCC 3 cut(s) 45, 395, 1238
BsoBI CYCGRG 1 cut(s) 1123
Bsp119I TTCGAA 1 cut(s) 83
Bsp143I GATC 6 cut(s) 165, 262, 427, 804, 1323, 1375
BspACI CCGC 4 cut(s) 141, 483, 935, 1435
BspANI GGCC 3 cut(s) 45, 395, 1238
BspCNI CTCAG 1 cut(s) 1056
BspFNI CGCG 2 cut(s) 228, 240
BspHI TCATGA 3 cut(s) 430, 738, 897
BspLI GGNNCC 2 cut(s) 499, 637
BspMI ACCTGC 1 cut(s) 331
BspPI GGATC 4 cut(s) 173, 435, 799, 1370
BspT104I TTCGAA 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 373
BsrI ACTGG 2 cut(s) 612, 1161
BssAI RCCGGY 1 cut(s) 373
BssECI CCNNGG 5 cut(s) 212, 338, 384, 1123, 1239
BssMI GATC 6 cut(s) 165, 262, 427, 804, 1323, 1375
BssNAI GTATAC 1 cut(s) 1136
BssT1I CCWWGG 3 cut(s) 338, 384, 1239
Bst1107I GTATAC 1 cut(s) 1136
Bst2UI CCWGG 2 cut(s) 197, 213
Bst4CI ACNGT 2 cut(s) 32, 1167
Bst6I CTCTTC 3 cut(s) 1119, 1366, 1404
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 3 cut(s) 381, 539, 1016
BstDEI CTNAG 3 cut(s) 182, 1043, 1457
BstF5I GGATG 2 cut(s) 15, 1507
BstFNI CGCG 2 cut(s) 228, 240
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 6 cut(s) 168, 265, 430, 807, 1326, 1378
BstMAI GTCTC 3 cut(s) 123, 698, 1500
BstMBI GATC 6 cut(s) 165, 262, 427, 804, 1323, 1375
BstMCI CGRYCG 1 cut(s) 1326
BstMWI GCNNNNNNNGC 4 cut(s) 281, 323, 947, 1024
BstNI CCWGG 2 cut(s) 197, 213
BstNSI RCATGY 2 cut(s) 945, 1094
BstSCI CCNGG 4 cut(s) 195, 211, 1122, 1123
BstUI CGCG 2 cut(s) 228, 240
BstV1I GCAGC 4 cut(s) 262, 326, 802, 950
BstV2I GAAGAC 1 cut(s) 441
BstX2I RGATCY 2 cut(s) 804, 1375
BstXI CCANNNNNNTGG 1 cut(s) 391
BstYI RGATCY 2 cut(s) 804, 1375
BstZ17I GTATAC 1 cut(s) 1136
BsuRI GGCC 3 cut(s) 45, 395, 1238
BtsCI GGATG 2 cut(s) 15, 1507
BtsI GCAGTG 1 cut(s) 407
BtsIMutI CAGTG 3 cut(s) 407, 619, 1385
BveI ACCTGC 1 cut(s) 331
Cac8I GCNNGC 3 cut(s) 381, 539, 1016
CciI TCATGA 3 cut(s) 430, 738, 897
CfoI GCGC 1 cut(s) 228
Cfr10I RCCGGY 1 cut(s) 373
Cfr13I GGNCC 2 cut(s) 44, 371
Cfr9I CCCGGG 1 cut(s) 1123
CseI GACGC 1 cut(s) 46
CspAI ACCGGT 1 cut(s) 373
DdeI CTNAG 3 cut(s) 182, 1043, 1457
DpnI GATC 6 cut(s) 167, 264, 429, 806, 1325, 1377
DpnII GATC 6 cut(s) 165, 262, 427, 804, 1323, 1375
DriI GACNNNNNGTC 1 cut(s) 571
EaeI YGGCCR 2 cut(s) 393, 1236
Eam1104I CTCTTC 3 cut(s) 1119, 1366, 1404
Eam1105I GACNNNNNGTC 1 cut(s) 571
EarI CTCTTC 3 cut(s) 1119, 1366, 1404
Eco130I CCWWGG 3 cut(s) 338, 384, 1239
Eco47I GGWCC 1 cut(s) 371
Eco88I CYCGRG 1 cut(s) 1123
EcoRII CCWGG 2 cut(s) 195, 211
EcoT14I CCWWGG 3 cut(s) 338, 384, 1239
ErhI CCWWGG 3 cut(s) 338, 384, 1239
Esp3I CGTCTC 1 cut(s) 123
FalI AAGNNNNNCTT 2 cut(s) 61, 93
FaqI GGGAC 1 cut(s) 746
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 2 cut(s) 1135, 1319
Fnu4HI GCNGC 5 cut(s) 276, 315, 816, 936, 939
FokI GGATG 2 cut(s) 22, 1514
Fsp4HI GCNGC 5 cut(s) 276, 315, 816, 936, 939
FspBI CTAG 6 cut(s) 99, 252, 809, 846, 953, 1211
GlaI GCGC 1 cut(s) 227
GluI GCNGC 5 cut(s) 276, 315, 816, 936, 939
GsuI CTGGAG 2 cut(s) 179, 1238
HaeIII GGCC 3 cut(s) 45, 395, 1238
HapII CCGG 4 cut(s) 374, 396, 762, 1124
HgaI GACGC 1 cut(s) 46
HhaI GCGC 1 cut(s) 228
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 1012
HinfI GANTC 8 cut(s) 706, 758, 1007, 1111, 1183, 1204, 1316, 1333
HpaII CCGG 4 cut(s) 374, 396, 762, 1124
HphI GGTGA 2 cut(s) 1310, 1525
Hpy166II GTNNAC 4 cut(s) 371, 1136, 1320, 1533
Hpy188I TCNGA 5 cut(s) 577, 757, 802, 1422, 1483
Hpy8I GTNNAC 4 cut(s) 371, 1136, 1320, 1533
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 7 cut(s) 57, 487, 622, 715, 901, 1361, 1399
HpyCH4III ACNGT 2 cut(s) 32, 1167
HpyCH4IV ACGT 3 cut(s) 132, 367, 1132
HpyCH4V TGCA 5 cut(s) 151, 326, 407, 698, 818
HpyF10VI GCNNNNNNNGC 4 cut(s) 281, 323, 947, 1024
HpyF3I CTNAG 3 cut(s) 182, 1043, 1457
HpySE526I ACGT 3 cut(s) 132, 367, 1132
HspAI GCGC 1 cut(s) 226
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 6 cut(s) 165, 262, 427, 804, 1323, 1375
LmnI GCTCC 4 cut(s) 118, 148, 198, 998
Lsp1109I GCAGC 4 cut(s) 262, 326, 802, 950
LweI GCATC 3 cut(s) 104, 262, 464
MaeI CTAG 6 cut(s) 99, 252, 809, 846, 953, 1211
MaeII ACGT 3 cut(s) 132, 367, 1132
MaeIII GTNAC 2 cut(s) 20, 673
MalI GATC 6 cut(s) 167, 264, 429, 806, 1325, 1377
MbiI CCGCTC 1 cut(s) 143
MboI GATC 6 cut(s) 165, 262, 427, 804, 1323, 1375
MflI RGATCY 2 cut(s) 804, 1375
MlsI TGGCCA 1 cut(s) 1238
MluNI TGGCCA 1 cut(s) 1238
MlyI GAGTC 4 cut(s) 700, 1105, 1213, 1325
MmeI TCCRAC 5 cut(s) 405, 636, 888, 1461, 1479
MnlI CCTC 8 cut(s) 11, 315, 343, 502, 694, 1149, 1194, 1477
Mox20I TGGCCA 1 cut(s) 1238
MroXI GAANNNNTTC 2 cut(s) 70, 1103
MscI TGGCCA 1 cut(s) 1238
MseI TTAA 4 cut(s) 234, 344, 693, 1515
Msp20I TGGCCA 1 cut(s) 1238
MspI CCGG 4 cut(s) 374, 396, 762, 1124
MspR9I CCNGG 4 cut(s) 197, 213, 1124, 1125
Mva1269I GAATGC 1 cut(s) 793
MvaI CCWGG 2 cut(s) 197, 213
MvnI CGCG 2 cut(s) 228, 240
MwoI GCNNNNNNNGC 4 cut(s) 281, 323, 947, 1024
NciI CCSGG 2 cut(s) 1124, 1125
NdeII GATC 6 cut(s) 165, 262, 427, 804, 1323, 1375
NlaIV GGNNCC 2 cut(s) 499, 637
NspI RCATGY 2 cut(s) 945, 1094
NspV TTCGAA 1 cut(s) 83
PagI TCATGA 3 cut(s) 430, 738, 897
PciI ACATGT 1 cut(s) 1090
PctI GAATGC 1 cut(s) 793
PdmI GAANNNNTTC 2 cut(s) 70, 1103
PfeI GAWTC 4 cut(s) 758, 1007, 1183, 1333
PflMI CCANNNNNTGG 1 cut(s) 424
PfoI TCCNGGA 1 cut(s) 195
PinAI ACCGGT 1 cut(s) 373
PkrI GCNGC 5 cut(s) 277, 316, 817, 937, 940
Ple19I CGATCG 1 cut(s) 1326
PleI GAGTC 4 cut(s) 700, 1105, 1212, 1324
PpsI GAGTC 4 cut(s) 700, 1105, 1212, 1324
PscI ACATGT 1 cut(s) 1090
PshBI ATTAAT 2 cut(s) 693, 1515
Psp6I CCWGG 2 cut(s) 195, 211
PspGI CCWGG 2 cut(s) 195, 211
PspN4I GGNNCC 2 cut(s) 499, 637
PspPI GGNCC 2 cut(s) 44, 371
PsrI GAACNNNNNNTAC 2 cut(s) 1146, 1178
PsuI RGATCY 2 cut(s) 804, 1375
PvuI CGATCG 1 cut(s) 1326
SaqAI TTAA 4 cut(s) 234, 344, 693, 1515
SatI GCNGC 5 cut(s) 276, 315, 816, 936, 939
Sau3AI GATC 6 cut(s) 165, 262, 427, 804, 1323, 1375
Sau96I GGNCC 2 cut(s) 44, 371
SchI GAGTC 4 cut(s) 700, 1105, 1213, 1325
ScrFI CCNGG 4 cut(s) 197, 213, 1124, 1125
SfaNI GCATC 3 cut(s) 104, 262, 464
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 1 cut(s) 371
SmaI CCCGGG 1 cut(s) 1125
SmlI CTYRAG 2 cut(s) 306, 708
SmoI CTYRAG 2 cut(s) 306, 708
SsiI CCGC 4 cut(s) 141, 483, 935, 1435
SspMI CTAG 6 cut(s) 99, 252, 809, 846, 953, 1211
StyD4I CCNGG 4 cut(s) 195, 211, 1122, 1123
StyI CCWWGG 3 cut(s) 338, 384, 1239
TaaI ACNGT 2 cut(s) 32, 1167
TaiI ACGT 3 cut(s) 135, 370, 1135
TaqI TCGA 5 cut(s) 83, 168, 555, 966, 1272
TauI GCSGC 1 cut(s) 938
TfiI GAWTC 4 cut(s) 758, 1007, 1183, 1333
Tru1I TTAA 4 cut(s) 234, 344, 693, 1515
Tru9I TTAA 4 cut(s) 234, 344, 693, 1515
TscAI CASTG 3 cut(s) 414, 619, 1392
TseI GCWGC 4 cut(s) 275, 314, 815, 938
TspMI CCCGGG 1 cut(s) 1123
TspRI CASTG 3 cut(s) 414, 619, 1392
Van91I CCANNNNNTGG 1 cut(s) 424
VpaK11BI GGWCC 1 cut(s) 371
VspI ATTAAT 2 cut(s) 693, 1515
XapI RAATTY 5 cut(s) 579, 745, 986, 1354, 1539
XbaI TCTAGA 1 cut(s) 98
XceI RCATGY 2 cut(s) 945, 1094
XmaI CCCGGG 1 cut(s) 1123
XmiI GTMKAC 2 cut(s) 1135, 1319
XmnI GAANNNNTTC 2 cut(s) 70, 1103
XspI CTAG 6 cut(s) 99, 252, 809, 846, 953, 1211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.