Rroxscaffold_2G00149030
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017962
Physical Location & Seq
Forward (+)
86660724 .. 86662265
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00149030.1

Sequence Viewer

Length: 1542 bp
ATGGGCAGGATGATGAGAGGTAACTACAATCGTTCTTCTTCTGGCCCTTCAAACTGCGTCAGGAGAACAAGTTCTGCTTCTTCGAACTTCAAGGCATCTAGACAAAAGGTTGCTCCACCAAGAAAAAGTGACGTTCTCTCCGCTCTCAAGCAAGACATTCACAGGATCGACACTCAAACACTTGGAAAAAAGCTCCAGGACACAGAAACACCAGGGTCAATAAAGAGCGAGATTAAACGCGAAATAGAAACTAGACAACATGATCAAGATGATGATGCTGCTGCCGCTGCGACTGCTGTGATTGTGGAAAACACACCTCAAGTAGCACCTCAACCTGCAAAAGCCTCTCCTTGGTTAATTGACAAGTTGTATGACAAACGTGGACCGGAGCGAGCCAAGGCGTTGGCCGGAGTAATTGCACTGCTAAACCAAGAGTTGGATCATGAAGACTTGAAAAAGAATTATGTTGTAGAGCTTCTCTACCGATGCTTGTGCGGTGTAAAGAAGGGTTCCACCAAAGAGGTTCAGTATTCATTGAAAGTTATCGGCTTGCTCTCAATCATCGTCGATTGTCAAGACAAGATGTCTGAAATTTACAGGGAGTTTCTTGCTGTATCTTCCACCACTGCTTGTCTAAAGAAGGCTGGAACCAACACAACAAAGATGTTGGAATGTTTGGGAGTTGTTACCTTTTTCGGTGGAATTAATGCAGAGGAGACTCAAGCTGCAATGAAGGTTATTTGGGACTTCATGATGAATTTCAAATCGGAATCCGGTAGTGATGATGTAAATAACCGAAAGATGCATTCTTCGGAGATCCTAGTTGCTGCAATATATTCTTGGCTGTTTCTTCTTTCTAGTATGGAAGGACCGCGATTGAACCAAACATATTGGACAGGGGCAATTTCCTTCTTCATGAACCTGTTGGACAACTATGATGACATAGTTCATGCGGCAGCATGTGAAGCACTAGCATTGATTTTCGAGACTGGTAGCCTTGACAAATTCTGGAATGGAGCAAATGATTCAAGCTTGTCATATTCGCAGTTGAGAAAAACACTCAGGGAGATGATTTTGAAGAAATTGAGCAGTCTAAACATGAACCCACATGTTGTGAAGTATTTCAAGACTCTTGATTTCCCGGGAGCACGTATACCTCTTTGTGAAAAAGAACTGGTATTATCGTCATGGTATCAGCGGATTCAATTCGATTATTTGAGGAGTCTGCTGGGGAATGAGTTTGAAAACTACATGGCCAAGGAAGACAAACTCCAGAACTTTTTGAGTTCAACCCTTATAGAAACAACAATGTGGGTGAAGAACTATATAAGCCTACGATCGAAAAGAATCAAAAGTTCAAGGAAAAAATTTCATGCCAGAAGGAAGAGATCCACAAACACTGACAGCAAAACAAAGGAAGAAAGAGAAAGTTCTGAGAAATTATTTTCGGGACAAAGAACAGACAACAGAAAGGACCAAACACAGGCAAATGTCAGAGGAATTGAAGTGGGGGGAGAGGATTCAGGACATATCAATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

513

Amino Acids

57.94

Weight (kDa)

9.15

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IFRD PF05004 119 - 365 7.8e-39 Interferon-related developmental regulator (IFRD)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017962)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08070 FvH4_5g33120
rosa_chinensis RchiOBHm_Chr2g0094131
rosa_laevigata RLG00000016458
rosa_multiflora Rmu_ssc0000149.1_g000004
rosa_roxburghii Rroxscaffold_2G00149030
rosa_rugosa Rorug02G0041100
rosa_samantha Rh2AG088800 Rh2BG088900 Rh2CG091300 Rh2DG087900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 343
AccB7I CCANNNNNTGG 1 cut(s) 436
AccBSI CCGCTC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 1153
AccII CGCG 2 cut(s) 240, 874
AciI CCGC 6 cut(s) 141, 285, 495, 872, 953, 1198
AclWI GGATC 4 cut(s) 173, 447, 811, 1383
AcoI YGGCCR 2 cut(s) 405, 1254
AcsI RAATTY 4 cut(s) 591, 757, 1004, 1367
AfiI CCNNNNNNNGG 3 cut(s) 351, 436, 1483
AflIII ACRYGT 1 cut(s) 1108
AhdI GACNNNNNGTC 1 cut(s) 583
AjnI CCWGG 2 cut(s) 195, 211
AloI GAACNNNNNNTCC 2 cut(s) 55, 87
AluBI AGCT 4 cut(s) 193, 475, 725, 1032
AluI AGCT 4 cut(s) 193, 475, 725, 1032
Alw21I GWGCWC 1 cut(s) 1150
Alw26I GTCTC 2 cut(s) 710, 980
AlwI GGATC 4 cut(s) 173, 447, 811, 1383
Ama87I CYCGRG 1 cut(s) 1141
AoxI GGCC 3 cut(s) 43, 405, 1254
ApeKI GCWGC 6 cut(s) 278, 281, 287, 725, 827, 956
ApoI RAATTY 4 cut(s) 591, 757, 1004, 1367
AseI ATTAAT 1 cut(s) 705
Asp700I GAANNNNTTC 2 cut(s) 70, 1121
AspS9I GGNCC 4 cut(s) 44, 383, 869, 1474
AsuC2I CCSGG 2 cut(s) 1142, 1143
AsuHPI GGTGA 1 cut(s) 1327
AsuII TTCGAA 1 cut(s) 83
AvaI CYCGRG 1 cut(s) 1141
AvaII GGWCC 3 cut(s) 383, 869, 1474
BalI TGGCCA 1 cut(s) 1256
BbsI GAAGAC 2 cut(s) 453, 1269
Bbv12I GWGCWC 1 cut(s) 1150
BbvI GCAGC 6 cut(s) 265, 268, 274, 712, 814, 968
BcgI CGANNNNNNTGC 2 cut(s) 474, 508
BciT130I CCWGG 2 cut(s) 197, 213
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 2 cut(s) 1142, 1143
BcoDI GTCTC 2 cut(s) 710, 980
BfaI CTAG 5 cut(s) 99, 252, 821, 858, 971
BfuAI ACCTGC 1 cut(s) 343
BisI GCNGC 8 cut(s) 279, 282, 285, 288, 726, 828, 954, 957
BlsI GCNGC 8 cut(s) 280, 283, 286, 289, 727, 829, 955, 958
Bme1390I CCNGG 4 cut(s) 197, 213, 1142, 1143
Bme18I GGWCC 3 cut(s) 383, 869, 1474
BmeRI GACNNNNNGTC 1 cut(s) 583
BmeT110I CYCGRG 1 cut(s) 1141
BmgT120I GGNCC 4 cut(s) 44, 383, 869, 1474
BmiI GGNNCC 2 cut(s) 511, 649
BmrFI CCNGG 4 cut(s) 197, 213, 1142, 1143
BmsI GCATC 4 cut(s) 104, 265, 476, 792
BpiI GAAGAC 2 cut(s) 453, 1269
BpmI CTGGAG 2 cut(s) 179, 1256
Bpu14I TTCGAA 1 cut(s) 83
BpuEI CTTGAG 3 cut(s) 131, 303, 705
BpuMI CCSGG 2 cut(s) 1142, 1143
BsaAI YACGTR 1 cut(s) 1151
BsaJI CCNNGG 5 cut(s) 212, 350, 396, 1141, 1257
BsaWI WCCGGW 2 cut(s) 385, 773
BsaXI ACNNNNNCTCC 4 cut(s) 55, 85, 122, 152
Bsc4I CCNNNNNNNGG 3 cut(s) 351, 436, 1483
Bse1I ACTGG 2 cut(s) 994, 1179
Bse3DI GCAATG 1 cut(s) 735
BseBI CCWGG 2 cut(s) 197, 213
BseDI CCNNGG 5 cut(s) 212, 350, 396, 1141, 1257
BseGI GGATG 1 cut(s) 15
BseLI CCNNNNNNNGG 3 cut(s) 351, 436, 1483
BseMI GCAATG 1 cut(s) 735
BseMII CTCAG 2 cut(s) 1075, 1425
BseNI ACTGG 2 cut(s) 994, 1179
BseRI GAGGAG 2 cut(s) 728, 1234
BseXI GCAGC 6 cut(s) 265, 268, 274, 712, 814, 968
BseYI CCCAGC 1 cut(s) 1228
Bsh1236I CGCG 2 cut(s) 240, 874
Bsh1285I CGRYCG 1 cut(s) 1340
BshFI GGCC 3 cut(s) 45, 407, 1256
BsiEI CGRYCG 1 cut(s) 1340
BsiHKAI GWGCWC 1 cut(s) 1150
BsiHKCI CYCGRG 1 cut(s) 1141
BsiSI CCGG 4 cut(s) 386, 408, 774, 1142
BslFI GGGAC 2 cut(s) 758, 1464
BslI CCNNNNNNNGG 3 cut(s) 351, 436, 1483
BsmAI GTCTC 2 cut(s) 710, 980
BsmFI GGGAC 2 cut(s) 758, 1464
BsmI GAATGC 1 cut(s) 805
BsnI GGCC 3 cut(s) 45, 407, 1256
BsoBI CYCGRG 1 cut(s) 1141
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 1150
Bsp143I GATC 6 cut(s) 165, 262, 439, 816, 1337, 1388
BspACI CCGC 6 cut(s) 141, 285, 495, 872, 953, 1198
BspANI GGCC 3 cut(s) 45, 407, 1256
BspCNI CTCAG 2 cut(s) 1074, 1426
BspFNI CGCG 2 cut(s) 240, 874
BspHI TCATGA 3 cut(s) 442, 750, 915
BspLI GGNNCC 2 cut(s) 511, 649
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 4 cut(s) 173, 447, 811, 1383
BspT104I TTCGAA 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 735
BsrI ACTGG 2 cut(s) 994, 1179
BssECI CCNNGG 5 cut(s) 212, 350, 396, 1141, 1257
BssMI GATC 6 cut(s) 165, 262, 439, 816, 1337, 1388
BssNAI GTATAC 1 cut(s) 1154
BssT1I CCWWGG 3 cut(s) 350, 396, 1257
Bst1107I GTATAC 1 cut(s) 1154
Bst2UI CCWGG 2 cut(s) 197, 213
Bst6I CTCTTC 1 cut(s) 1379
BstBAI YACGTR 1 cut(s) 1151
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 2 cut(s) 393, 551
BstDEI CTNAG 2 cut(s) 1061, 1434
BstF5I GGATG 1 cut(s) 15
BstFNI CGCG 2 cut(s) 240, 874
BstKTI GATC 6 cut(s) 168, 265, 442, 819, 1340, 1391
BstMAI GTCTC 2 cut(s) 710, 980
BstMBI GATC 6 cut(s) 165, 262, 439, 816, 1337, 1388
BstMCI CGRYCG 1 cut(s) 1340
BstMWI GCNNNNNNNGC 4 cut(s) 284, 287, 293, 965
BstNI CCWGG 2 cut(s) 197, 213
BstNSI RCATGY 2 cut(s) 963, 1112
BstSCI CCNGG 4 cut(s) 195, 211, 1140, 1141
BstUI CGCG 2 cut(s) 240, 874
BstV1I GCAGC 6 cut(s) 265, 268, 274, 712, 814, 968
BstV2I GAAGAC 2 cut(s) 453, 1269
BstX2I RGATCY 2 cut(s) 816, 1388
BstXI CCANNNNNNTGG 1 cut(s) 403
BstYI RGATCY 2 cut(s) 816, 1388
BstZ17I GTATAC 1 cut(s) 1154
BsuRI GGCC 3 cut(s) 45, 407, 1256
BtsCI GGATG 1 cut(s) 15
BtsI GCAGTG 2 cut(s) 419, 624
BtsIMutI CAGTG 3 cut(s) 419, 624, 1398
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 2 cut(s) 393, 551
CciI TCATGA 3 cut(s) 442, 750, 915
Cfr13I GGNCC 4 cut(s) 44, 383, 869, 1474
Cfr9I CCCGGG 1 cut(s) 1141
CseI GACGC 1 cut(s) 46
DdeI CTNAG 2 cut(s) 1061, 1434
DpnI GATC 6 cut(s) 167, 264, 441, 818, 1339, 1390
DpnII GATC 6 cut(s) 165, 262, 439, 816, 1337, 1388
DriI GACNNNNNGTC 1 cut(s) 583
EaeI YGGCCR 2 cut(s) 405, 1254
Eam1104I CTCTTC 1 cut(s) 1379
Eam1105I GACNNNNNGTC 1 cut(s) 583
EarI CTCTTC 1 cut(s) 1379
Eco130I CCWWGG 3 cut(s) 350, 396, 1257
Eco47I GGWCC 3 cut(s) 383, 869, 1474
Eco88I CYCGRG 1 cut(s) 1141
EcoRII CCWGG 2 cut(s) 195, 211
EcoT14I CCWWGG 3 cut(s) 350, 396, 1257
EcoT22I ATGCAT 1 cut(s) 807
ErhI CCWWGG 3 cut(s) 350, 396, 1257
FalI AAGNNNNNCTT 2 cut(s) 61, 93
FaqI GGGAC 2 cut(s) 758, 1464
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 1 cut(s) 1153
Fnu4HI GCNGC 8 cut(s) 279, 282, 285, 288, 726, 828, 954, 957
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 8 cut(s) 279, 282, 285, 288, 726, 828, 954, 957
FspBI CTAG 5 cut(s) 99, 252, 821, 858, 971
GluI GCNGC 8 cut(s) 279, 282, 285, 288, 726, 828, 954, 957
GsaI CCCAGC 1 cut(s) 1232
GsuI CTGGAG 2 cut(s) 179, 1256
HaeIII GGCC 3 cut(s) 45, 407, 1256
HapII CCGG 4 cut(s) 386, 408, 774, 1142
HgaI GACGC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 1030
HinfI GANTC 8 cut(s) 718, 770, 1025, 1129, 1201, 1222, 1347, 1520
HpaII CCGG 4 cut(s) 386, 408, 774, 1142
HphI GGTGA 1 cut(s) 1327
Hpy166II GTNNAC 2 cut(s) 383, 1154
Hpy188I TCNGA 5 cut(s) 589, 769, 814, 1435, 1496
Hpy8I GTNNAC 2 cut(s) 383, 1154
Hpy99I CGWCG 1 cut(s) 569
HpyAV CCTTC 7 cut(s) 57, 499, 634, 727, 860, 919, 1374
HpyCH4IV ACGT 3 cut(s) 132, 379, 1150
HpyCH4V TGCA 6 cut(s) 338, 419, 710, 728, 805, 830
HpyF10VI GCNNNNNNNGC 4 cut(s) 284, 287, 293, 965
HpyF3I CTNAG 2 cut(s) 1061, 1434
HpySE526I ACGT 3 cut(s) 132, 379, 1150
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 6 cut(s) 165, 262, 439, 816, 1337, 1388
LmnI GCTCC 5 cut(s) 118, 198, 388, 1016, 1145
Lsp1109I GCAGC 6 cut(s) 265, 268, 274, 712, 814, 968
LweI GCATC 4 cut(s) 104, 265, 476, 792
MaeI CTAG 5 cut(s) 99, 252, 821, 858, 971
MaeII ACGT 3 cut(s) 132, 379, 1150
MaeIII GTNAC 3 cut(s) 20, 128, 685
MalI GATC 6 cut(s) 167, 264, 441, 818, 1339, 1390
MbiI CCGCTC 1 cut(s) 143
MboI GATC 6 cut(s) 165, 262, 439, 816, 1337, 1388
MflI RGATCY 2 cut(s) 816, 1388
MhlI GDGCHC 1 cut(s) 1150
MlsI TGGCCA 1 cut(s) 1256
MluNI TGGCCA 1 cut(s) 1256
MlyI GAGTC 3 cut(s) 712, 1123, 1231
MmeI TCCRAC 3 cut(s) 417, 648, 906
Mox20I TGGCCA 1 cut(s) 1256
Mph1103I ATGCAT 1 cut(s) 807
MroXI GAANNNNTTC 2 cut(s) 70, 1121
MscI TGGCCA 1 cut(s) 1256
MseI TTAA 3 cut(s) 234, 356, 705
MslI CAYNNNNRTG 1 cut(s) 1533
Msp20I TGGCCA 1 cut(s) 1256
MspA1I CMGCKG 2 cut(s) 287, 1198
MspI CCGG 4 cut(s) 386, 408, 774, 1142
MspR9I CCNGG 4 cut(s) 197, 213, 1142, 1143
Mva1269I GAATGC 1 cut(s) 805
MvaI CCWGG 2 cut(s) 197, 213
MvnI CGCG 2 cut(s) 240, 874
MwoI GCNNNNNNNGC 4 cut(s) 284, 287, 293, 965
NciI CCSGG 2 cut(s) 1142, 1143
NdeII GATC 6 cut(s) 165, 262, 439, 816, 1337, 1388
NlaIV GGNNCC 2 cut(s) 511, 649
NmuCI GTSAC 1 cut(s) 128
NsiI ATGCAT 1 cut(s) 807
NspI RCATGY 2 cut(s) 963, 1112
NspV TTCGAA 1 cut(s) 83
PagI TCATGA 3 cut(s) 442, 750, 915
PciI ACATGT 1 cut(s) 1108
PctI GAATGC 1 cut(s) 805
PdmI GAANNNNTTC 2 cut(s) 70, 1121
PfeI GAWTC 5 cut(s) 770, 1025, 1201, 1347, 1520
PflMI CCANNNNNTGG 1 cut(s) 436
PfoI TCCNGGA 1 cut(s) 195
PkrI GCNGC 8 cut(s) 280, 283, 286, 289, 727, 829, 955, 958
Ple19I CGATCG 1 cut(s) 1340
PleI GAGTC 3 cut(s) 712, 1123, 1230
PpsI GAGTC 3 cut(s) 712, 1123, 1230
Ppu21I YACGTR 1 cut(s) 1151
PscI ACATGT 1 cut(s) 1108
PshBI ATTAAT 1 cut(s) 705
Psp6I CCWGG 2 cut(s) 195, 211
PspFI CCCAGC 1 cut(s) 1228
PspGI CCWGG 2 cut(s) 195, 211
PspN4I GGNNCC 2 cut(s) 511, 649
PspPI GGNCC 4 cut(s) 44, 383, 869, 1474
PsuI RGATCY 2 cut(s) 816, 1388
PvuI CGATCG 1 cut(s) 1340
RseI CAYNNNNRTG 1 cut(s) 1533
SaqAI TTAA 3 cut(s) 234, 356, 705
SatI GCNGC 8 cut(s) 279, 282, 285, 288, 726, 828, 954, 957
Sau3AI GATC 6 cut(s) 165, 262, 439, 816, 1337, 1388
Sau96I GGNCC 4 cut(s) 44, 383, 869, 1474
SchI GAGTC 3 cut(s) 712, 1123, 1231
ScrFI CCNGG 4 cut(s) 197, 213, 1142, 1143
SduI GDGCHC 1 cut(s) 1150
SfaNI GCATC 4 cut(s) 104, 265, 476, 792
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 3 cut(s) 383, 869, 1474
SmaI CCCGGG 1 cut(s) 1143
SmiMI CAYNNNNRTG 1 cut(s) 1533
SmlI CTYRAG 3 cut(s) 146, 318, 720
SmoI CTYRAG 3 cut(s) 146, 318, 720
SsiI CCGC 6 cut(s) 141, 285, 495, 872, 953, 1198
SspMI CTAG 5 cut(s) 99, 252, 821, 858, 971
StyD4I CCNGG 4 cut(s) 195, 211, 1140, 1141
StyI CCWWGG 3 cut(s) 350, 396, 1257
TaiI ACGT 3 cut(s) 135, 382, 1153
TaqI TCGA 6 cut(s) 83, 168, 567, 984, 1209, 1340
TauI GCSGC 2 cut(s) 287, 956
TfiI GAWTC 5 cut(s) 770, 1025, 1201, 1347, 1520
Tru1I TTAA 3 cut(s) 234, 356, 705
Tru9I TTAA 3 cut(s) 234, 356, 705
TscAI CASTG 3 cut(s) 426, 631, 1405
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 6 cut(s) 278, 281, 287, 725, 827, 956
Tsp45I GTSAC 1 cut(s) 128
TspMI CCCGGG 1 cut(s) 1141
TspRI CASTG 3 cut(s) 426, 631, 1405
Van91I CCANNNNNTGG 1 cut(s) 436
VpaK11BI GGWCC 3 cut(s) 383, 869, 1474
VspI ATTAAT 1 cut(s) 705
XapI RAATTY 4 cut(s) 591, 757, 1004, 1367
XbaI TCTAGA 1 cut(s) 98
XceI RCATGY 2 cut(s) 963, 1112
XmaI CCCGGG 1 cut(s) 1141
XmiI GTMKAC 1 cut(s) 1153
XmnI GAANNNNTTC 2 cut(s) 70, 1121
XspI CTAG 5 cut(s) 99, 252, 821, 858, 971
Zsp2I ATGCAT 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.