FvH4_5g33120
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017962
Physical Location & Seq
Forward (+)
23924967 .. 23925896
930 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g33120.t1

Sequence Viewer

Length: 930 bp
ATGGCTGAGATTTACAGGGAGTTTCTTGATGCAGCTTCCAGCAGTGCTTGTCTAAAGAAGGCTGGAACAAACACAACGAAGATGCTGGAATGCTTGGGAGTTGTCACCTTTTTTGGTGCAATTGGCGCAGAGGAGACTCAAAAGGGAATGAAGGTTATTTGGGACTTCTTGATAAGTTTCAAACCTGAATCCGGTAGTGATGATGTGATTAACCGAAAGAAGCAGTCACAGGAGATCCTAGTTGCTGCAATATATTCTTGGTGCTTTCTTCTTACTAGCACGGATGGATGGCGACTGAACCAAAATTGGAGAGGTGCAATTTCCTTCTTCATGGACATCTTGGACAACAATGATGAAGTATTAGTTCAAGGGGCAGCATGTGCAGCACTAGCATTGATTTTCGAGACTGATGCTCTTGACAAATTCTGGGACAGAGCAAATGATACAACCTTGCCATATTCGCAGTTGCGAGAAACATTCAGGGAGATGATTTTGAAGAAAGTGAGCAGTCTTAACATGAACACAAATATTGTGGAGTACTTCAAGACTCTTCACTGCCCGATATCACGTCCAACTGTTTGTGAAAAGAAGCTGGAATTGACATCATGGTATCAGGTGATTCAGCTGGCATTTCTGAAGAGTTTTCTTGGGAAAGAATTTGAGAACTTCATGACCAAGGAAGACAAACTGCAGAGCTTTTTTGAGGTCAATCCTAATAGAAATGACATTGTGGGTGAAGAACTCTTTGTGCCTACGATCGAAAAGATCACTGTAAATATAGTCATACCTGAAAGAAGAGATCCACAGACAATGACAGCAGAGCAAAGGAAGAAGGAAAGAGTTTTGAGGACTTCCATTCAGGGAAAGGCGAAGACACAACTAAGGACCAAACATAGGCTACTGTCAGAGGAATTGAACTGCTTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

310

Amino Acids

35.52

Weight (kDa)

5.94

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IFRD PF05004 3 - 145 2.7e-19 Interferon-related developmental regulator (IFRD)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017962)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08070 FvH4_5g33120
rosa_chinensis RchiOBHm_Chr2g0094131
rosa_laevigata RLG00000016458
rosa_multiflora Rmu_ssc0000149.1_g000004
rosa_roxburghii Rroxscaffold_2G00149030
rosa_rugosa Rorug02G0041100
rosa_samantha Rh2AG088800 Rh2BG088900 Rh2CG091300 Rh2DG087900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 229, 794
AcsI RAATTY 2 cut(s) 422, 656
AcuI CTGAAG 1 cut(s) 656
AfaI GTAC 1 cut(s) 539
AfiI CCNNNNNNNGG 2 cut(s) 191, 894
AgsI TTSAA 5 cut(s) 181, 368, 496, 544, 916
AjiI CACGTC 1 cut(s) 569
AluBI AGCT 4 cut(s) 35, 592, 625, 696
AluI AGCT 4 cut(s) 35, 592, 625, 696
Alw26I GTCTC 2 cut(s) 128, 398
AlwI GGATC 2 cut(s) 229, 794
ApeKI GCWGC 4 cut(s) 32, 245, 374, 383
ApoI RAATTY 2 cut(s) 422, 656
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 885
AsuHPI GGTGA 3 cut(s) 97, 628, 746
AvaII GGWCC 1 cut(s) 885
BbsI GAAGAC 2 cut(s) 687, 878
BbvI GCAGC 4 cut(s) 44, 232, 386, 395
BccI CCATC 2 cut(s) 278, 282
BcgI CGANNNNNNTGC 2 cut(s) 392, 426
BcoDI GTCTC 2 cut(s) 128, 398
BfaI CTAG 3 cut(s) 239, 276, 389
BfmI CTRYAG 1 cut(s) 689
BisI GCNGC 4 cut(s) 33, 246, 375, 384
BlsI GCNGC 4 cut(s) 34, 247, 376, 385
BmcAI AGTACT 1 cut(s) 539
Bme18I GGWCC 1 cut(s) 885
BmgBI CACGTC 1 cut(s) 569
BmgT120I GGNCC 1 cut(s) 885
BmsI GCATC 3 cut(s) 19, 72, 400
BpiI GAAGAC 2 cut(s) 687, 878
BsaJI CCNNGG 1 cut(s) 675
BsaWI WCCGGW 1 cut(s) 191
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 894
BseDI CCNNGG 1 cut(s) 675
BseGI GGATG 2 cut(s) 289, 293
BseLI CCNNNNNNNGG 2 cut(s) 191, 894
BseRI GAGGAG 1 cut(s) 146
BseXI GCAGC 4 cut(s) 44, 232, 386, 395
BsgI GTGCAG 1 cut(s) 402
Bsh1285I CGRYCG 1 cut(s) 759
BsiEI CGRYCG 1 cut(s) 759
BsiSI CCGG 1 cut(s) 192
BslFI GGGAC 2 cut(s) 176, 443
BslI CCNNNNNNNGG 2 cut(s) 191, 894
BsmAI GTCTC 2 cut(s) 128, 398
BsmFI GGGAC 2 cut(s) 176, 443
BsmI GAATGC 1 cut(s) 95
Bsp143I GATC 4 cut(s) 234, 756, 765, 799
BspHI TCATGA 1 cut(s) 669
BspMAI CTGCAG 1 cut(s) 693
BspPI GGATC 2 cut(s) 229, 794
BssECI CCNNGG 1 cut(s) 675
BssMI GATC 4 cut(s) 234, 756, 765, 799
BssT1I CCWWGG 1 cut(s) 675
Bst4CI ACNGT 3 cut(s) 577, 772, 903
Bst6I CTCTTC 3 cut(s) 555, 632, 790
BstAPI GCANNNNNTGC 1 cut(s) 380
BstC8I GCNNGC 1 cut(s) 627
BstDEI CTNAG 2 cut(s) 6, 881
BstF5I GGATG 2 cut(s) 289, 293
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 4 cut(s) 237, 759, 768, 802
BstMAI GTCTC 2 cut(s) 128, 398
BstMBI GATC 4 cut(s) 234, 756, 765, 799
BstMCI CGRYCG 1 cut(s) 759
BstMWI GCNNNNNNNGC 5 cut(s) 125, 380, 383, 389, 460
BstNSI RCATGY 1 cut(s) 381
BstSFI CTRYAG 1 cut(s) 689
BstV1I GCAGC 4 cut(s) 44, 232, 386, 395
BstV2I GAAGAC 2 cut(s) 687, 878
BstX2I RGATCY 2 cut(s) 234, 799
BstYI RGATCY 2 cut(s) 234, 799
BtrI CACGTC 1 cut(s) 569
BtsCI GGATG 2 cut(s) 289, 293
BtsI GCAGTG 2 cut(s) 49, 553
BtsIMutI CAGTG 3 cut(s) 49, 553, 768
Cac8I GCNNGC 1 cut(s) 627
CciI TCATGA 1 cut(s) 669
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 885
Csp6I GTAC 1 cut(s) 538
CspCI CAANNNNNGTGG 2 cut(s) 513, 548
CviAII CATG 5 cut(s) 331, 378, 517, 606, 670
CviJI RGCY 7 cut(s) 5, 35, 62, 592, 625, 696, 898
CviKI_1 RGCY 7 cut(s) 5, 35, 62, 592, 625, 696, 898
CviQI GTAC 1 cut(s) 538
DdeI CTNAG 2 cut(s) 6, 881
DpnI GATC 4 cut(s) 236, 758, 767, 801
DpnII GATC 4 cut(s) 234, 756, 765, 799
Eam1104I CTCTTC 3 cut(s) 555, 632, 790
EarI CTCTTC 3 cut(s) 555, 632, 790
Eco130I CCWWGG 1 cut(s) 675
Eco32I GATATC 1 cut(s) 564
Eco47I GGWCC 1 cut(s) 885
Eco57I CTGAAG 1 cut(s) 656
EcoRV GATATC 1 cut(s) 564
EcoT14I CCWWGG 1 cut(s) 675
ErhI CCWWGG 1 cut(s) 675
FaeI CATG 5 cut(s) 334, 381, 520, 609, 673
FaqI GGGAC 2 cut(s) 176, 443
FatI CATG 5 cut(s) 330, 377, 516, 605, 669
Fnu4HI GCNGC 4 cut(s) 33, 246, 375, 384
FokI GGATG 2 cut(s) 296, 300
Fsp4HI GCNGC 4 cut(s) 33, 246, 375, 384
FspBI CTAG 3 cut(s) 239, 276, 389
GlaI GCGC 1 cut(s) 127
GluI GCNGC 4 cut(s) 33, 246, 375, 384
HapII CCGG 1 cut(s) 192
HhaI GCGC 1 cut(s) 128
Hin1II CATG 5 cut(s) 334, 381, 520, 609, 673
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HinfI GANTC 4 cut(s) 136, 188, 547, 619
HpaII CCGG 1 cut(s) 192
HphI GGTGA 3 cut(s) 97, 628, 746
Hpy188I TCNGA 2 cut(s) 636, 907
Hpy188III TCNNGA 6 cut(s) 26, 169, 403, 416, 544, 670
HpyAV CCTTC 4 cut(s) 52, 145, 334, 826
HpyCH4III ACNGT 3 cut(s) 577, 772, 903
HpyCH4IV ACGT 1 cut(s) 568
HpyCH4V TGCA 6 cut(s) 32, 119, 248, 317, 383, 691
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 380, 383, 389, 460
HpyF3I CTNAG 2 cut(s) 6, 881
HpySE526I ACGT 1 cut(s) 568
Hsp92II CATG 5 cut(s) 334, 381, 520, 609, 673
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 4 cut(s) 234, 756, 765, 799
Lsp1109I GCAGC 4 cut(s) 44, 232, 386, 395
LweI GCATC 3 cut(s) 19, 72, 400
MaeI CTAG 3 cut(s) 239, 276, 389
MaeII ACGT 1 cut(s) 568
MaeIII GTNAC 2 cut(s) 103, 225
MalI GATC 4 cut(s) 236, 758, 767, 801
MboI GATC 4 cut(s) 234, 756, 765, 799
MfeI CAATTG 1 cut(s) 120
MflI RGATCY 2 cut(s) 234, 799
MluCI AATT 7 cut(s) 120, 304, 318, 422, 596, 656, 911
MlyI GAGTC 2 cut(s) 130, 541
MmeI TCCRAC 1 cut(s) 596
MnlI CCTC 5 cut(s) 124, 305, 697, 840, 901
MseI TTAA 3 cut(s) 210, 513, 928
MspA1I CMGCKG 1 cut(s) 625
MspI CCGG 1 cut(s) 192
MunI CAATTG 1 cut(s) 120
Mva1269I GAATGC 1 cut(s) 95
MwoI GCNNNNNNNGC 5 cut(s) 125, 380, 383, 389, 460
NdeII GATC 4 cut(s) 234, 756, 765, 799
NlaIII CATG 5 cut(s) 334, 381, 520, 609, 673
NmuCI GTSAC 2 cut(s) 103, 225
NspI RCATGY 1 cut(s) 381
PagI TCATGA 1 cut(s) 669
PctI GAATGC 1 cut(s) 95
PfeI GAWTC 2 cut(s) 188, 619
PkrI GCNGC 4 cut(s) 34, 247, 376, 385
Ple19I CGATCG 1 cut(s) 759
PleI GAGTC 2 cut(s) 130, 541
PpsI GAGTC 2 cut(s) 130, 541
PspPI GGNCC 1 cut(s) 885
PstI CTGCAG 1 cut(s) 693
PsuI RGATCY 2 cut(s) 234, 799
PvuI CGATCG 1 cut(s) 759
PvuII CAGCTG 1 cut(s) 625
RsaI GTAC 1 cut(s) 539
RsaNI GTAC 1 cut(s) 538
SaqAI TTAA 3 cut(s) 210, 513, 928
SatI GCNGC 4 cut(s) 33, 246, 375, 384
Sau3AI GATC 4 cut(s) 234, 756, 765, 799
Sau96I GGNCC 1 cut(s) 885
ScaI AGTACT 1 cut(s) 539
SchI GAGTC 2 cut(s) 130, 541
SfaNI GCATC 3 cut(s) 19, 72, 400
SfcI CTRYAG 1 cut(s) 689
SinI GGWCC 1 cut(s) 885
Sse9I AATT 7 cut(s) 120, 304, 318, 422, 596, 656, 911
SspI AATATT 1 cut(s) 529
SspMI CTAG 3 cut(s) 239, 276, 389
StyI CCWWGG 1 cut(s) 675
TaaI ACNGT 3 cut(s) 577, 772, 903
TaiI ACGT 1 cut(s) 571
TaqI TCGA 2 cut(s) 402, 759
TasI AATT 7 cut(s) 120, 304, 318, 422, 596, 656, 911
TatI WGTACW 1 cut(s) 537
TfiI GAWTC 2 cut(s) 188, 619
Tru1I TTAA 3 cut(s) 210, 513, 928
Tru9I TTAA 3 cut(s) 210, 513, 928
TscAI CASTG 3 cut(s) 49, 560, 775
TseFI GTSAC 2 cut(s) 103, 225
TseI GCWGC 4 cut(s) 32, 245, 374, 383
Tsp45I GTSAC 2 cut(s) 103, 225
TspDTI ATGAA 5 cut(s) 164, 319, 369, 533, 658
TspGWI ACGGA 1 cut(s) 296
TspRI CASTG 3 cut(s) 49, 560, 775
VpaK11BI GGWCC 1 cut(s) 885
XapI RAATTY 2 cut(s) 422, 656
XceI RCATGY 1 cut(s) 381
XspI CTAG 3 cut(s) 239, 276, 389
ZrmI AGTACT 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.