RLG00000016458
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017962
Physical Location & Seq
Reverse (-)
6763057 .. 6764562
1506 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016458

Sequence Viewer

Length: 1506 bp
ATGAGAGGTAACTACAATCGTTCTTCTTCTGGCCCTTCAAACTGCGTCAGGAGAACAAGCTCTGCTTCTTCGAACTTCAAGGCATCTAGACAAAAGGTTGCTCCACCAAGAAAAAGAGATGTTCTCTCAGCTTTCATGCAAGACATTCACAGGATCGACACTCAAACACTTGGAGAAAAGCTCCAGGACACAGAAACACCAGGGTCAGTAAAGCGCGAGATTAAACGCGAAATAGAAACTAGACAAGATGATGCTGCTGCTGACGCTGCGACTGCTGTGATTGTGGAAAACACACCTCAAGTAGCACCTCAACCTGCAAAAGCCTCTCCTTGGTTAATTGACAAGTTGTATGACAAACGTGGACCGGAGCGAGCCAAGGCGTTGGCCGGAGTAATTGCACTGCTAAACCAAGAGTTGGATCATGAAGACTTGAAAAAGAATTATGTTGTAGAGCTTCTCTACCGATGCTTGTGCGGTGTAAAGAAGGGTTCCACCAAAGAGGTTCAGTATTCATTGAAAGTTATCGGCTTGCTCTCAATCATCGTCGATTGTAAAGACAAGATGTCTGAAATTTACAGGGAGTTTCTTGCTGTATCTTCCACCAGTGCTTGTCTAAAGAAGGCTGGAACCAACACAACAAAGATGTTGGAATGTCTGGCTGTTGTTACCTTTTTCGGTGGAAATGATGCAGAGGAGACTCAAGCTGCAATGAAGGTTATTTGGGACTTTATGATGAATCTTCAATCGGAATCCGGTAGTGATGATGTAAATAACCGAAAGAAGCATTCTTCGGAGATCCTAGTTGCTGCAATATATTCTTGGCTGTTTCTTCTTACTAGCATGATAGGACCGCGATTGAACCAGACATATTGGAGAGGGGCAATTTCCTTCTTCATGAACCTGTTGGACAACTATGATGACATAGTTCACGCGGCAGCATGTGAAGCACTAGCATTGATTTTCGAGACTGGTAGCCTTGACAAATTCTGGAATGGAGCAAATGATTCAAGCTTGTCATATTCGCAGTTGAGAAAAACACTCAGGGAGATGATTTTGAAGAAATTGAGCAGTCTAAACATGAACCCACATGTTTTGAAGTATTTCAAGACTCTTGATTTCCCGGGAGCACGTATACCTCTTTGTGAAAAAGAACTGGTATTACCGTCATGGTATCAGCGGATTCAATTCGATTATTTGAGGAGTCTGCTAGGGAATGAGTTTGAAAACTACATGGCCAAGGAAGACAAACTCCAGAACTTTTTTGAGTTCAACCCTTGTAGAAACAGCAATGTGGGTGAAGAACTATATGAGCCTACGGTCGAAGAGATCACGGTAAAATTTTTCATGCCAGAAGGAAGAGATCCACAAACACTGACAGCAAAACAAAGGAAGAAAGAGAAAGTTTGGAGAACTTCTTCTCTGGAGAAAAGCCAGACAAAACTAAGGGCCAAACACAGGAAAATGTCAGAGGAATTGAAGTACTTTGATGGAAACAAAATTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

502

Amino Acids

57.03

Weight (kDa)

8.87

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IFRD PF05004 112 - 358 1.7e-39 Interferon-related developmental regulator (IFRD)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017962)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08070 FvH4_5g33120
rosa_chinensis RchiOBHm_Chr2g0094131
rosa_laevigata RLG00000016458
rosa_multiflora Rmu_ssc0000149.1_g000004
rosa_roxburghii Rroxscaffold_2G00149030
rosa_rugosa Rorug02G0041100
rosa_samantha Rh2AG088800 Rh2BG088900 Rh2CG091300 Rh2DG087900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 322
AccB7I CCANNNNNTGG 1 cut(s) 415
AccI GTMKAC 1 cut(s) 1132
AccII CGCG 4 cut(s) 216, 228, 853, 932
AciI CCGC 4 cut(s) 474, 851, 932, 1177
AclWI GGATC 4 cut(s) 161, 426, 790, 1355
AcoI YGGCCR 2 cut(s) 384, 1233
AcsI RAATTY 3 cut(s) 570, 983, 1337
AfaI GTAC 1 cut(s) 1481
AfiI CCNNNNNNNGG 3 cut(s) 330, 415, 1455
AflIII ACRYGT 1 cut(s) 1087
AhdI GACNNNNNGTC 1 cut(s) 562
AjnI CCWGG 2 cut(s) 183, 199
AluBI AGCT 6 cut(s) 60, 131, 181, 454, 704, 1011
AluI AGCT 6 cut(s) 60, 131, 181, 454, 704, 1011
Alw21I GWGCWC 1 cut(s) 1129
Alw26I GTCTC 2 cut(s) 689, 959
AlwI GGATC 4 cut(s) 161, 426, 790, 1355
Ama87I CYCGRG 1 cut(s) 1120
AoxI GGCC 4 cut(s) 31, 384, 1233, 1446
ApeKI GCWGC 6 cut(s) 254, 257, 266, 704, 806, 935
ApoI RAATTY 3 cut(s) 570, 983, 1337
Asp700I GAANNNNTTC 2 cut(s) 1100, 1414
AspLEI GCGC 1 cut(s) 216
AspS9I GGNCC 4 cut(s) 32, 362, 848, 1446
AsuC2I CCSGG 2 cut(s) 1121, 1122
AsuHPI GGTGA 1 cut(s) 1307
AsuII TTCGAA 1 cut(s) 71
AvaI CYCGRG 1 cut(s) 1120
AvaII GGWCC 2 cut(s) 362, 848
BalI TGGCCA 1 cut(s) 1235
BbsI GAAGAC 2 cut(s) 432, 1248
Bbv12I GWGCWC 1 cut(s) 1129
BbvI GCAGC 6 cut(s) 241, 244, 253, 691, 793, 947
BccI CCATC 1 cut(s) 1481
BcgI CGANNNNNNTGC 2 cut(s) 453, 487
BciT130I CCWGG 2 cut(s) 185, 201
BcnI CCSGG 2 cut(s) 1121, 1122
BcoDI GTCTC 2 cut(s) 689, 959
BfaI CTAG 6 cut(s) 87, 240, 800, 837, 950, 1208
BfuAI ACCTGC 1 cut(s) 322
BisI GCNGC 7 cut(s) 255, 258, 267, 705, 807, 933, 936
BlsI GCNGC 7 cut(s) 256, 259, 268, 706, 808, 934, 937
BmcAI AGTACT 1 cut(s) 1481
Bme1390I CCNGG 4 cut(s) 185, 201, 1121, 1122
Bme18I GGWCC 2 cut(s) 362, 848
BmeRI GACNNNNNGTC 1 cut(s) 562
BmeT110I CYCGRG 1 cut(s) 1120
BmgT120I GGNCC 4 cut(s) 32, 362, 848, 1446
BmiI GGNNCC 2 cut(s) 490, 628
BmrFI CCNGG 4 cut(s) 185, 201, 1121, 1122
BmsI GCATC 4 cut(s) 92, 241, 455, 676
BpiI GAAGAC 2 cut(s) 432, 1248
BplI GAGNNNNNCTC 4 cut(s) 108, 140, 165, 197
BpmI CTGGAG 3 cut(s) 167, 1235, 1442
Bpu14I TTCGAA 1 cut(s) 71
BpuEI CTTGAG 2 cut(s) 282, 684
BpuMI CCSGG 2 cut(s) 1121, 1122
BsaAI YACGTR 1 cut(s) 1130
BsaJI CCNNGG 5 cut(s) 200, 329, 375, 1120, 1236
BsaWI WCCGGW 2 cut(s) 364, 752
Bsc4I CCNNNNNNNGG 3 cut(s) 330, 415, 1455
Bse1I ACTGG 3 cut(s) 603, 973, 1158
Bse3DI GCAATG 2 cut(s) 714, 1294
BseBI CCWGG 2 cut(s) 185, 201
BseDI CCNNGG 5 cut(s) 200, 329, 375, 1120, 1236
BseLI CCNNNNNNNGG 3 cut(s) 330, 415, 1455
BseMI GCAATG 2 cut(s) 714, 1294
BseMII CTCAG 2 cut(s) 141, 1054
BseNI ACTGG 3 cut(s) 603, 973, 1158
BseRI GAGGAG 2 cut(s) 707, 1213
BseXI GCAGC 6 cut(s) 241, 244, 253, 691, 793, 947
Bsh1236I CGCG 4 cut(s) 216, 228, 853, 932
Bsh1285I CGRYCG 1 cut(s) 1320
BshFI GGCC 4 cut(s) 33, 386, 1235, 1448
BsiEI CGRYCG 1 cut(s) 1320
BsiHKAI GWGCWC 1 cut(s) 1129
BsiHKCI CYCGRG 1 cut(s) 1120
BsiSI CCGG 4 cut(s) 365, 387, 753, 1121
BslFI GGGAC 1 cut(s) 737
BslI CCNNNNNNNGG 3 cut(s) 330, 415, 1455
BsmAI GTCTC 2 cut(s) 689, 959
BsmFI GGGAC 1 cut(s) 737
BsmI GAATGC 1 cut(s) 784
BsnI GGCC 4 cut(s) 33, 386, 1235, 1448
BsoBI CYCGRG 1 cut(s) 1120
Bsp119I TTCGAA 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 1129
Bsp143I GATC 5 cut(s) 153, 418, 795, 1326, 1360
BspACI CCGC 4 cut(s) 474, 851, 932, 1177
BspANI GGCC 4 cut(s) 33, 386, 1235, 1448
BspCNI CTCAG 2 cut(s) 140, 1053
BspFNI CGCG 4 cut(s) 216, 228, 853, 932
BspHI TCATGA 2 cut(s) 421, 894
BspLI GGNNCC 2 cut(s) 490, 628
BspMI ACCTGC 1 cut(s) 322
BspPI GGATC 4 cut(s) 161, 426, 790, 1355
BspT104I TTCGAA 1 cut(s) 71
BsrDI GCAATG 2 cut(s) 714, 1294
BsrI ACTGG 3 cut(s) 603, 973, 1158
BssECI CCNNGG 5 cut(s) 200, 329, 375, 1120, 1236
BssMI GATC 5 cut(s) 153, 418, 795, 1326, 1360
BssNAI GTATAC 1 cut(s) 1133
BssT1I CCWWGG 3 cut(s) 329, 375, 1236
Bst1107I GTATAC 1 cut(s) 1133
Bst2UI CCWGG 2 cut(s) 185, 201
Bst4CI ACNGT 3 cut(s) 1164, 1318, 1333
Bst6I CTCTTC 2 cut(s) 1317, 1351
BstBAI YACGTR 1 cut(s) 1130
BstBI TTCGAA 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 372, 530
BstDEI CTNAG 3 cut(s) 127, 1040, 1442
BstFNI CGCG 4 cut(s) 216, 228, 853, 932
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 5 cut(s) 156, 421, 798, 1329, 1363
BstMAI GTCTC 2 cut(s) 689, 959
BstMBI GATC 5 cut(s) 153, 418, 795, 1326, 1360
BstMCI CGRYCG 1 cut(s) 1320
BstMWI GCNNNNNNNGC 4 cut(s) 263, 266, 272, 944
BstNI CCWGG 2 cut(s) 185, 201
BstNSI RCATGY 2 cut(s) 942, 1091
BstSCI CCNGG 4 cut(s) 183, 199, 1119, 1120
BstUI CGCG 4 cut(s) 216, 228, 853, 932
BstV1I GCAGC 6 cut(s) 241, 244, 253, 691, 793, 947
BstV2I GAAGAC 2 cut(s) 432, 1248
BstX2I RGATCY 2 cut(s) 795, 1360
BstXI CCANNNNNNTGG 1 cut(s) 382
BstYI RGATCY 2 cut(s) 795, 1360
BstZ17I GTATAC 1 cut(s) 1133
BsuRI GGCC 4 cut(s) 33, 386, 1235, 1448
BtsI GCAGTG 1 cut(s) 398
BtsIMutI CAGTG 3 cut(s) 398, 610, 1370
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 2 cut(s) 372, 530
CciI TCATGA 2 cut(s) 421, 894
CfoI GCGC 1 cut(s) 216
Cfr13I GGNCC 4 cut(s) 32, 362, 848, 1446
Cfr9I CCCGGG 1 cut(s) 1120
CseI GACGC 2 cut(s) 34, 272
Csp6I GTAC 1 cut(s) 1480
CspCI CAANNNNNGTGG 2 cut(s) 1074, 1109
CviQI GTAC 1 cut(s) 1480
DdeI CTNAG 3 cut(s) 127, 1040, 1442
DpnI GATC 5 cut(s) 155, 420, 797, 1328, 1362
DpnII GATC 5 cut(s) 153, 418, 795, 1326, 1360
DriI GACNNNNNGTC 1 cut(s) 562
EaeI YGGCCR 2 cut(s) 384, 1233
Eam1104I CTCTTC 2 cut(s) 1317, 1351
Eam1105I GACNNNNNGTC 1 cut(s) 562
EarI CTCTTC 2 cut(s) 1317, 1351
Eco130I CCWWGG 3 cut(s) 329, 375, 1236
Eco47I GGWCC 2 cut(s) 362, 848
Eco88I CYCGRG 1 cut(s) 1120
EcoRII CCWGG 2 cut(s) 183, 199
EcoT14I CCWWGG 3 cut(s) 329, 375, 1236
ErhI CCWWGG 3 cut(s) 329, 375, 1236
FalI AAGNNNNNCTT 2 cut(s) 49, 81
FaqI GGGAC 1 cut(s) 737
FblI GTMKAC 1 cut(s) 1132
Fnu4HI GCNGC 7 cut(s) 255, 258, 267, 705, 807, 933, 936
Fsp4HI GCNGC 7 cut(s) 255, 258, 267, 705, 807, 933, 936
FspBI CTAG 6 cut(s) 87, 240, 800, 837, 950, 1208
GlaI GCGC 1 cut(s) 215
GluI GCNGC 7 cut(s) 255, 258, 267, 705, 807, 933, 936
GsuI CTGGAG 3 cut(s) 167, 1235, 1442
HaeIII GGCC 4 cut(s) 33, 386, 1235, 1448
HapII CCGG 4 cut(s) 365, 387, 753, 1121
HgaI GACGC 2 cut(s) 34, 272
HhaI GCGC 1 cut(s) 216
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 1009
HinfI GANTC 7 cut(s) 697, 736, 749, 1004, 1108, 1180, 1201
HpaII CCGG 4 cut(s) 365, 387, 753, 1121
HphI GGTGA 1 cut(s) 1307
Hpy166II GTNNAC 3 cut(s) 362, 928, 1133
Hpy188I TCNGA 4 cut(s) 568, 748, 793, 1468
Hpy8I GTNNAC 3 cut(s) 362, 928, 1133
Hpy99I CGWCG 1 cut(s) 548
HpyAV CCTTC 6 cut(s) 45, 478, 613, 706, 898, 1346
HpyCH4III ACNGT 3 cut(s) 1164, 1318, 1333
HpyCH4IV ACGT 2 cut(s) 358, 1129
HpyCH4V TGCA 6 cut(s) 139, 317, 398, 689, 707, 809
HpyF10VI GCNNNNNNNGC 4 cut(s) 263, 266, 272, 944
HpyF3I CTNAG 3 cut(s) 127, 1040, 1442
HpySE526I ACGT 2 cut(s) 358, 1129
HspAI GCGC 1 cut(s) 214
Kzo9I GATC 5 cut(s) 153, 418, 795, 1326, 1360
LmnI GCTCC 5 cut(s) 106, 186, 367, 995, 1124
Lsp1109I GCAGC 6 cut(s) 241, 244, 253, 691, 793, 947
LweI GCATC 4 cut(s) 92, 241, 455, 676
MaeI CTAG 6 cut(s) 87, 240, 800, 837, 950, 1208
MaeII ACGT 2 cut(s) 358, 1129
MaeIII GTNAC 2 cut(s) 8, 664
MalI GATC 5 cut(s) 155, 420, 797, 1328, 1362
MboI GATC 5 cut(s) 153, 418, 795, 1326, 1360
MflI RGATCY 2 cut(s) 795, 1360
MhlI GDGCHC 1 cut(s) 1129
MlsI TGGCCA 1 cut(s) 1235
MluNI TGGCCA 1 cut(s) 1235
MlyI GAGTC 3 cut(s) 691, 1102, 1210
MmeI TCCRAC 3 cut(s) 396, 627, 885
MnlI CCTC 9 cut(s) 306, 318, 334, 493, 685, 869, 1146, 1191, 1462
Mox20I TGGCCA 1 cut(s) 1235
MroXI GAANNNNTTC 2 cut(s) 1100, 1414
MscI TGGCCA 1 cut(s) 1235
MseI TTAA 2 cut(s) 222, 335
Msp20I TGGCCA 1 cut(s) 1235
MspA1I CMGCKG 1 cut(s) 1177
MspI CCGG 4 cut(s) 365, 387, 753, 1121
MspR9I CCNGG 4 cut(s) 185, 201, 1121, 1122
Mva1269I GAATGC 1 cut(s) 784
MvaI CCWGG 2 cut(s) 185, 201
MvnI CGCG 4 cut(s) 216, 228, 853, 932
MwoI GCNNNNNNNGC 4 cut(s) 263, 266, 272, 944
NciI CCSGG 2 cut(s) 1121, 1122
NdeII GATC 5 cut(s) 153, 418, 795, 1326, 1360
NlaIV GGNNCC 2 cut(s) 490, 628
NspI RCATGY 2 cut(s) 942, 1091
NspV TTCGAA 1 cut(s) 71
PagI TCATGA 2 cut(s) 421, 894
PciI ACATGT 1 cut(s) 1087
PctI GAATGC 1 cut(s) 784
PdmI GAANNNNTTC 2 cut(s) 1100, 1414
PfeI GAWTC 4 cut(s) 736, 749, 1004, 1180
PflMI CCANNNNNTGG 1 cut(s) 415
PfoI TCCNGGA 1 cut(s) 183
PkrI GCNGC 7 cut(s) 256, 259, 268, 706, 808, 934, 937
PleI GAGTC 3 cut(s) 691, 1102, 1209
PpsI GAGTC 3 cut(s) 691, 1102, 1209
Ppu21I YACGTR 1 cut(s) 1130
PscI ACATGT 1 cut(s) 1087
Psp6I CCWGG 2 cut(s) 183, 199
PspGI CCWGG 2 cut(s) 183, 199
PspN4I GGNNCC 2 cut(s) 490, 628
PspPI GGNCC 4 cut(s) 32, 362, 848, 1446
PsrI GAACNNNNNNTAC 2 cut(s) 1143, 1175
PsuI RGATCY 2 cut(s) 795, 1360
RsaI GTAC 1 cut(s) 1481
RsaNI GTAC 1 cut(s) 1480
SaqAI TTAA 2 cut(s) 222, 335
SatI GCNGC 7 cut(s) 255, 258, 267, 705, 807, 933, 936
Sau3AI GATC 5 cut(s) 153, 418, 795, 1326, 1360
Sau96I GGNCC 4 cut(s) 32, 362, 848, 1446
ScaI AGTACT 1 cut(s) 1481
SchI GAGTC 3 cut(s) 691, 1102, 1210
ScrFI CCNGG 4 cut(s) 185, 201, 1121, 1122
SduI GDGCHC 1 cut(s) 1129
SfaNI GCATC 4 cut(s) 92, 241, 455, 676
SfuI TTCGAA 1 cut(s) 71
SinI GGWCC 2 cut(s) 362, 848
SmaI CCCGGG 1 cut(s) 1122
SmlI CTYRAG 2 cut(s) 297, 699
SmoI CTYRAG 2 cut(s) 297, 699
SsiI CCGC 4 cut(s) 474, 851, 932, 1177
SspMI CTAG 6 cut(s) 87, 240, 800, 837, 950, 1208
StyD4I CCNGG 4 cut(s) 183, 199, 1119, 1120
StyI CCWWGG 3 cut(s) 329, 375, 1236
TaaI ACNGT 3 cut(s) 1164, 1318, 1333
TaiI ACGT 2 cut(s) 361, 1132
TaqI TCGA 6 cut(s) 71, 156, 546, 963, 1188, 1320
TatI WGTACW 1 cut(s) 1479
TauI GCSGC 1 cut(s) 935
TfiI GAWTC 4 cut(s) 736, 749, 1004, 1180
Tru1I TTAA 2 cut(s) 222, 335
Tru9I TTAA 2 cut(s) 222, 335
TscAI CASTG 3 cut(s) 405, 610, 1377
TseI GCWGC 6 cut(s) 254, 257, 266, 704, 806, 935
TspDTI ATGAA 9 cut(s) 124, 438, 501, 725, 749, 883, 911, 1094, 1333
TspMI CCCGGG 1 cut(s) 1120
TspRI CASTG 3 cut(s) 405, 610, 1377
Van91I CCANNNNNTGG 1 cut(s) 415
VpaK11BI GGWCC 2 cut(s) 362, 848
XapI RAATTY 3 cut(s) 570, 983, 1337
XbaI TCTAGA 1 cut(s) 86
XceI RCATGY 2 cut(s) 942, 1091
XmaI CCCGGG 1 cut(s) 1120
XmiI GTMKAC 1 cut(s) 1132
XmnI GAANNNNTTC 2 cut(s) 1100, 1414
XspI CTAG 6 cut(s) 87, 240, 800, 837, 950, 1208
ZrmI AGTACT 1 cut(s) 1481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.