Rh2AG088800
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0017962
Physical Location & Seq
Reverse (-)
7435894 .. 7437518
1625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG088800.1

Sequence Viewer

Length: 1512 bp
ATGGGCAGGATGATGAGAGGTAACTGCAATCGTTCTTCTTCTGGCCCTTCAAACTGCGTCAGGAGAACAAGTTCTGCTTCTTCGAACTTCAAGGCATCTAGACAAAAGGTTGCTCCACCAAGAAAAAGAGACGTTCACTCCGCTCTCATGCAAGACATTCACAGGATCGACACTCAAACACTTGGAGAAAAGCTCCAGGACACAGAAACACCAGGGTCAGTAAAGCAGGAGATTAAACGCGAAATAGAAACTAGACAACATGACCAAGATGATGCTGCTGCTGACGCTGCGACTGCTGTGATTGTGGGAAACACACCTCAAGTAGCACCTCAACCTGCAAAAGCCTCTCCTTGGTTAATTGACAAGTTGTATGACAAACGTGGACCGGTGCGAGCCAAGGCGTTGGCCGGAGTAATTGCACTGCTAAACCAAGAGTTGGATCATGAAGACTTGAAAAAGAATTATGTTGTAGAGCTTCTCTACCGATGCTTGTGCGGTGTAAAGAAGGGTTCCACCAAAGAGGTTCAGTATTCATTGAAAGTTATCGGCTTGCTCTCAATCATCGTCGATTGTCAAGACAAGATGTCTGAAATTTACAGGGAGTTTCTTGCTGTATCTTCCACCAGTGCTTTTCTAAAGAAGGCCGGAACCAACACAAGAGAGATGTTGGAATGTCTGGGTGTTGTTACCTTTTTCGGTGGAATTAATGCAGAGGAGACTCAAGCTGCAATGAAGGTTATTTGGGACTTCATGATGAATTTCAAATCGGAATCCAGTAGTGATGATGTAAATAACCGAAAGAAGCATTCTTCGGAGATCCTAGTTGCTGCAATATATTCTTGGCTGTTTCTTCTTACTAGCATGGAAAAAGGGGGATTGAACTATTGGACAGGGGCAATTTCCTTCTTCATGAACCTGTTGGACAACTATGATGACATAGTTCATGCGGCAGCATGTGAAGCACTAGCATTGATTTTCGAGATTGATAGCCTTGACAAATTCTGGAATGGAGCAAATGATTCAAGCTTGCCATATTCGCAGTTGAGAAAAACACTCAGGGAGATGATTTTGAAGAAATTGAGCAGTCTAAACATGAACTCACATGTTGTGAAGTATTTCAAGACTCTTCATTTCCCGGGAAAACGTATACCTCTTTGTGAAAAAGAACTGGTATTACCGTCATGGTATCGGCTGATTCAATTCAATTATTTGAGGAGTCTGCTAGGGAATGAGTTTGAAAACTACATGGCCAAGGAAGACAAACTCCAGAACTTTTTTGAGTTCGAACCTTATAGAAACAACAATGTGGGTGAAGAACCATATGGGTCTACGATCGAAAAGAATCAAAAGAACACAGCAAAAAATTCCATGCCAGAAGGAAGAGATCCACAAACACTGACAGCAAAACAAAGGAAGAAAGAGAAAGTTCGGATAACTTCTTTGCGGGAAAAAGGACAGACAAAACTAAGGAACAAACACAGGAAAACCAAGGAACAAACACAGGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

503

Amino Acids

57.21

Weight (kDa)

9.19

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IFRD PF05004 119 - 368 8.4e-36 Interferon-related developmental regulator (IFRD)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017962)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08070 FvH4_5g33120
rosa_chinensis RchiOBHm_Chr2g0094131
rosa_laevigata RLG00000016458
rosa_multiflora Rmu_ssc0000149.1_g000004
rosa_roxburghii Rroxscaffold_2G00149030
rosa_rugosa Rorug02G0041100
rosa_samantha Rh2AG088800 Rh2BG088900 Rh2CG091300 Rh2DG087900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 343
AccB7I CCANNNNNTGG 1 cut(s) 436
AccBSI CCGCTC 1 cut(s) 143
AccI GTMKAC 2 cut(s) 1147, 1328
AccII CGCG 1 cut(s) 240
AciI CCGC 4 cut(s) 141, 495, 947, 1444
AclWI GGATC 4 cut(s) 173, 447, 811, 1379
AcoI YGGCCR 2 cut(s) 405, 1248
AcsI RAATTY 4 cut(s) 591, 757, 998, 1363
AfiI CCNNNNNNNGG 2 cut(s) 351, 436
AflIII ACRYGT 1 cut(s) 1102
AgeI ACCGGT 1 cut(s) 385
AhdI GACNNNNNGTC 1 cut(s) 583
AjnI CCWGG 2 cut(s) 195, 211
AloI GAACNNNNNNTCC 2 cut(s) 55, 87
AluBI AGCT 4 cut(s) 193, 475, 725, 1026
AluI AGCT 4 cut(s) 193, 475, 725, 1026
Alw26I GTCTC 2 cut(s) 123, 710
AlwI GGATC 4 cut(s) 173, 447, 811, 1379
Ama87I CYCGRG 1 cut(s) 1135
AoxI GGCC 4 cut(s) 43, 405, 642, 1248
ApeKI GCWGC 6 cut(s) 275, 278, 287, 725, 827, 950
ApoI RAATTY 4 cut(s) 591, 757, 998, 1363
AseI ATTAAT 1 cut(s) 705
AsiGI ACCGGT 1 cut(s) 385
Asp700I GAANNNNTTC 2 cut(s) 70, 1115
AspS9I GGNCC 2 cut(s) 44, 383
AsuC2I CCSGG 2 cut(s) 1136, 1137
AsuHPI GGTGA 1 cut(s) 1322
AsuII TTCGAA 2 cut(s) 83, 1284
AvaI CYCGRG 1 cut(s) 1135
AvaII GGWCC 1 cut(s) 383
BalI TGGCCA 1 cut(s) 1250
BbsI GAAGAC 2 cut(s) 453, 1263
BbvI GCAGC 6 cut(s) 262, 265, 274, 712, 814, 962
BcgI CGANNNNNNTGC 2 cut(s) 474, 508
BciT130I CCWGG 2 cut(s) 197, 213
BcnI CCSGG 2 cut(s) 1136, 1137
BcoDI GTCTC 2 cut(s) 123, 710
BfaI CTAG 6 cut(s) 99, 252, 821, 858, 965, 1223
BfuAI ACCTGC 1 cut(s) 343
BisI GCNGC 7 cut(s) 276, 279, 288, 726, 828, 948, 951
BlsI GCNGC 7 cut(s) 277, 280, 289, 727, 829, 949, 952
Bme1390I CCNGG 4 cut(s) 197, 213, 1136, 1137
Bme18I GGWCC 1 cut(s) 383
BmeRI GACNNNNNGTC 1 cut(s) 583
BmeT110I CYCGRG 1 cut(s) 1135
BmgT120I GGNCC 2 cut(s) 44, 383
BmiI GGNNCC 2 cut(s) 511, 649
BmrFI CCNGG 4 cut(s) 197, 213, 1136, 1137
BmsI GCATC 3 cut(s) 104, 262, 476
BpiI GAAGAC 2 cut(s) 453, 1263
BplI GAGNNNNNCTC 2 cut(s) 177, 209
BpmI CTGGAG 2 cut(s) 179, 1250
Bpu14I TTCGAA 2 cut(s) 83, 1284
BpuEI CTTGAG 2 cut(s) 303, 705
BpuMI CCSGG 2 cut(s) 1136, 1137
BsaJI CCNNGG 6 cut(s) 212, 350, 396, 1135, 1251, 1488
BsaWI WCCGGW 1 cut(s) 385
BsaXI ACNNNNNCTCC 4 cut(s) 55, 85, 122, 152
Bsc4I CCNNNNNNNGG 2 cut(s) 351, 436
Bse118I RCCGGY 1 cut(s) 385
Bse1I ACTGG 3 cut(s) 624, 774, 1173
Bse3DI GCAATG 1 cut(s) 735
BseBI CCWGG 2 cut(s) 197, 213
BseDI CCNNGG 6 cut(s) 212, 350, 396, 1135, 1251, 1488
BseGI GGATG 1 cut(s) 15
BseLI CCNNNNNNNGG 2 cut(s) 351, 436
BseMI GCAATG 1 cut(s) 735
BseMII CTCAG 1 cut(s) 1069
BseNI ACTGG 3 cut(s) 624, 774, 1173
BseRI GAGGAG 2 cut(s) 728, 1228
BseXI GCAGC 6 cut(s) 262, 265, 274, 712, 814, 962
Bsh1236I CGCG 1 cut(s) 240
Bsh1285I CGRYCG 1 cut(s) 1335
BshFI GGCC 4 cut(s) 45, 407, 644, 1250
BshTI ACCGGT 1 cut(s) 385
BsiEI CGRYCG 1 cut(s) 1335
BsiHKCI CYCGRG 1 cut(s) 1135
BsiSI CCGG 4 cut(s) 386, 408, 645, 1136
BslFI GGGAC 1 cut(s) 758
BslI CCNNNNNNNGG 2 cut(s) 351, 436
BsmAI GTCTC 2 cut(s) 123, 710
BsmBI CGTCTC 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 758
BsmI GAATGC 1 cut(s) 805
BsnI GGCC 4 cut(s) 45, 407, 644, 1250
BsoBI CYCGRG 1 cut(s) 1135
Bsp119I TTCGAA 2 cut(s) 83, 1284
Bsp143I GATC 5 cut(s) 165, 439, 816, 1332, 1384
BspACI CCGC 4 cut(s) 141, 495, 947, 1444
BspANI GGCC 4 cut(s) 45, 407, 644, 1250
BspCNI CTCAG 1 cut(s) 1068
BspFNI CGCG 1 cut(s) 240
BspHI TCATGA 3 cut(s) 442, 750, 909
BspLI GGNNCC 2 cut(s) 511, 649
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 4 cut(s) 173, 447, 811, 1379
BspT104I TTCGAA 2 cut(s) 83, 1284
BsrBI CCGCTC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 735
BsrFI RCCGGY 1 cut(s) 385
BsrI ACTGG 3 cut(s) 624, 774, 1173
BssAI RCCGGY 1 cut(s) 385
BssECI CCNNGG 6 cut(s) 212, 350, 396, 1135, 1251, 1488
BssMI GATC 5 cut(s) 165, 439, 816, 1332, 1384
BssNAI GTATAC 1 cut(s) 1148
BssT1I CCWWGG 4 cut(s) 350, 396, 1251, 1488
Bst1107I GTATAC 1 cut(s) 1148
Bst2UI CCWGG 2 cut(s) 197, 213
Bst4CI ACNGT 1 cut(s) 1179
Bst6I CTCTTC 2 cut(s) 1131, 1375
BstBI TTCGAA 2 cut(s) 83, 1284
BstC8I GCNNGC 3 cut(s) 393, 551, 1028
BstDEI CTNAG 2 cut(s) 1055, 1466
BstF5I GGATG 1 cut(s) 15
BstFNI CGCG 1 cut(s) 240
BstKTI GATC 5 cut(s) 168, 442, 819, 1335, 1387
BstMAI GTCTC 2 cut(s) 123, 710
BstMBI GATC 5 cut(s) 165, 439, 816, 1332, 1384
BstMCI CGRYCG 1 cut(s) 1335
BstMWI GCNNNNNNNGC 5 cut(s) 284, 287, 293, 959, 1036
BstNI CCWGG 2 cut(s) 197, 213
BstNSI RCATGY 2 cut(s) 957, 1106
BstSCI CCNGG 4 cut(s) 195, 211, 1134, 1135
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 6 cut(s) 262, 265, 274, 712, 814, 962
BstV2I GAAGAC 2 cut(s) 453, 1263
BstX2I RGATCY 2 cut(s) 816, 1384
BstXI CCANNNNNNTGG 1 cut(s) 403
BstYI RGATCY 2 cut(s) 816, 1384
BstZ17I GTATAC 1 cut(s) 1148
BsuRI GGCC 4 cut(s) 45, 407, 644, 1250
BtsCI GGATG 1 cut(s) 15
BtsI GCAGTG 1 cut(s) 419
BtsIMutI CAGTG 3 cut(s) 419, 631, 1394
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 3 cut(s) 393, 551, 1028
CciI TCATGA 3 cut(s) 442, 750, 909
Cfr10I RCCGGY 1 cut(s) 385
Cfr13I GGNCC 2 cut(s) 44, 383
Cfr9I CCCGGG 1 cut(s) 1135
CseI GACGC 2 cut(s) 46, 293
CspAI ACCGGT 1 cut(s) 385
DdeI CTNAG 2 cut(s) 1055, 1466
DpnI GATC 5 cut(s) 167, 441, 818, 1334, 1386
DpnII GATC 5 cut(s) 165, 439, 816, 1332, 1384
DriI GACNNNNNGTC 1 cut(s) 583
EaeI YGGCCR 2 cut(s) 405, 1248
Eam1104I CTCTTC 2 cut(s) 1131, 1375
Eam1105I GACNNNNNGTC 1 cut(s) 583
EarI CTCTTC 2 cut(s) 1131, 1375
Eco130I CCWWGG 4 cut(s) 350, 396, 1251, 1488
Eco47I GGWCC 1 cut(s) 383
Eco88I CYCGRG 1 cut(s) 1135
EcoRII CCWGG 2 cut(s) 195, 211
EcoT14I CCWWGG 4 cut(s) 350, 396, 1251, 1488
ErhI CCWWGG 4 cut(s) 350, 396, 1251, 1488
Esp3I CGTCTC 1 cut(s) 123
FalI AAGNNNNNCTT 2 cut(s) 61, 93
FaqI GGGAC 1 cut(s) 758
FauI CCCGC 1 cut(s) 1437
FauNDI CATATG 1 cut(s) 1321
FblI GTMKAC 2 cut(s) 1147, 1328
Fnu4HI GCNGC 7 cut(s) 276, 279, 288, 726, 828, 948, 951
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 7 cut(s) 276, 279, 288, 726, 828, 948, 951
FspBI CTAG 6 cut(s) 99, 252, 821, 858, 965, 1223
GluI GCNGC 7 cut(s) 276, 279, 288, 726, 828, 948, 951
GsuI CTGGAG 2 cut(s) 179, 1250
HaeIII GGCC 4 cut(s) 45, 407, 644, 1250
HapII CCGG 4 cut(s) 386, 408, 645, 1136
HgaI GACGC 2 cut(s) 46, 293
HindIII AAGCTT 1 cut(s) 1024
HinfI GANTC 7 cut(s) 718, 770, 1019, 1123, 1195, 1216, 1342
HpaII CCGG 4 cut(s) 386, 408, 645, 1136
HphI GGTGA 1 cut(s) 1322
Hpy166II GTNNAC 4 cut(s) 136, 383, 1148, 1329
Hpy188I TCNGA 4 cut(s) 589, 769, 814, 1431
Hpy8I GTNNAC 4 cut(s) 136, 383, 1148, 1329
Hpy99I CGWCG 1 cut(s) 569
HpyAV CCTTC 6 cut(s) 57, 499, 634, 727, 913, 1370
HpyCH4III ACNGT 1 cut(s) 1179
HpyCH4IV ACGT 3 cut(s) 132, 379, 1144
HpyCH4V TGCA 7 cut(s) 27, 151, 338, 419, 710, 728, 830
HpyF10VI GCNNNNNNNGC 5 cut(s) 284, 287, 293, 959, 1036
HpyF3I CTNAG 2 cut(s) 1055, 1466
HpySE526I ACGT 3 cut(s) 132, 379, 1144
Kzo9I GATC 5 cut(s) 165, 439, 816, 1332, 1384
LmnI GCTCC 3 cut(s) 118, 198, 1010
Lsp1109I GCAGC 6 cut(s) 262, 265, 274, 712, 814, 962
LweI GCATC 3 cut(s) 104, 262, 476
MaeI CTAG 6 cut(s) 99, 252, 821, 858, 965, 1223
MaeII ACGT 3 cut(s) 132, 379, 1144
MaeIII GTNAC 2 cut(s) 20, 685
MalI GATC 5 cut(s) 167, 441, 818, 1334, 1386
MbiI CCGCTC 1 cut(s) 143
MboI GATC 5 cut(s) 165, 439, 816, 1332, 1384
MflI RGATCY 2 cut(s) 816, 1384
MlsI TGGCCA 1 cut(s) 1250
MluNI TGGCCA 1 cut(s) 1250
MlyI GAGTC 3 cut(s) 712, 1117, 1225
MmeI TCCRAC 3 cut(s) 417, 648, 900
MnlI CCTC 8 cut(s) 11, 327, 339, 355, 514, 706, 1161, 1206
Mox20I TGGCCA 1 cut(s) 1250
MroXI GAANNNNTTC 2 cut(s) 70, 1115
MscI TGGCCA 1 cut(s) 1250
MseI TTAA 3 cut(s) 234, 356, 705
Msp20I TGGCCA 1 cut(s) 1250
MspI CCGG 4 cut(s) 386, 408, 645, 1136
MspR9I CCNGG 4 cut(s) 197, 213, 1136, 1137
Mva1269I GAATGC 1 cut(s) 805
MvaI CCWGG 2 cut(s) 197, 213
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 5 cut(s) 284, 287, 293, 959, 1036
NciI CCSGG 2 cut(s) 1136, 1137
NdeI CATATG 1 cut(s) 1321
NdeII GATC 5 cut(s) 165, 439, 816, 1332, 1384
NlaIV GGNNCC 2 cut(s) 511, 649
NspI RCATGY 2 cut(s) 957, 1106
NspV TTCGAA 2 cut(s) 83, 1284
PagI TCATGA 3 cut(s) 442, 750, 909
PciI ACATGT 1 cut(s) 1102
PctI GAATGC 1 cut(s) 805
PdmI GAANNNNTTC 2 cut(s) 70, 1115
PfeI GAWTC 4 cut(s) 770, 1019, 1195, 1342
PflMI CCANNNNNTGG 1 cut(s) 436
PfoI TCCNGGA 1 cut(s) 195
PinAI ACCGGT 1 cut(s) 385
PkrI GCNGC 7 cut(s) 277, 280, 289, 727, 829, 949, 952
Ple19I CGATCG 1 cut(s) 1335
PleI GAGTC 3 cut(s) 712, 1117, 1224
PpsI GAGTC 3 cut(s) 712, 1117, 1224
PscI ACATGT 1 cut(s) 1102
PshBI ATTAAT 1 cut(s) 705
Psp6I CCWGG 2 cut(s) 195, 211
PspGI CCWGG 2 cut(s) 195, 211
PspN4I GGNNCC 2 cut(s) 511, 649
PspPI GGNCC 2 cut(s) 44, 383
PsrI GAACNNNNNNTAC 2 cut(s) 1158, 1190
PsuI RGATCY 2 cut(s) 816, 1384
PvuI CGATCG 1 cut(s) 1335
SaqAI TTAA 3 cut(s) 234, 356, 705
SatI GCNGC 7 cut(s) 276, 279, 288, 726, 828, 948, 951
Sau3AI GATC 5 cut(s) 165, 439, 816, 1332, 1384
Sau96I GGNCC 2 cut(s) 44, 383
SchI GAGTC 3 cut(s) 712, 1117, 1225
ScrFI CCNGG 4 cut(s) 197, 213, 1136, 1137
SfaNI GCATC 3 cut(s) 104, 262, 476
SfuI TTCGAA 2 cut(s) 83, 1284
SinI GGWCC 1 cut(s) 383
SmaI CCCGGG 1 cut(s) 1137
SmlI CTYRAG 2 cut(s) 318, 720
SmoI CTYRAG 2 cut(s) 318, 720
SsiI CCGC 4 cut(s) 141, 495, 947, 1444
SspMI CTAG 6 cut(s) 99, 252, 821, 858, 965, 1223
StyD4I CCNGG 4 cut(s) 195, 211, 1134, 1135
StyI CCWWGG 4 cut(s) 350, 396, 1251, 1488
TaaI ACNGT 1 cut(s) 1179
TaiI ACGT 3 cut(s) 135, 382, 1147
TaqI TCGA 6 cut(s) 83, 168, 567, 978, 1284, 1335
TauI GCSGC 1 cut(s) 950
TfiI GAWTC 4 cut(s) 770, 1019, 1195, 1342
Tru1I TTAA 3 cut(s) 234, 356, 705
Tru9I TTAA 3 cut(s) 234, 356, 705
TscAI CASTG 3 cut(s) 426, 631, 1401
TseI GCWGC 6 cut(s) 275, 278, 287, 725, 827, 950
TspMI CCCGGG 1 cut(s) 1135
TspRI CASTG 3 cut(s) 426, 631, 1401
Van91I CCANNNNNTGG 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 383
VspI ATTAAT 1 cut(s) 705
XapI RAATTY 4 cut(s) 591, 757, 998, 1363
XbaI TCTAGA 1 cut(s) 98
XceI RCATGY 2 cut(s) 957, 1106
XmaI CCCGGG 1 cut(s) 1135
XmiI GTMKAC 2 cut(s) 1147, 1328
XmnI GAANNNNTTC 2 cut(s) 70, 1115
XspI CTAG 6 cut(s) 99, 252, 821, 858, 965, 1223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.